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Cmc07g0192151 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc07g0192151
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr07:12602168..12602629
RNA-Seq ExpressionCmc07g0192151
SyntenyCmc07g0192151
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032437.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.5e-74100Show/hide
Query:  MRQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVET
        MRQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVET
Subjt:  MRQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVET

Query:  GQGEDFSISSDDGLTFEGCLCVPEDSAVKTELLTEAHSSSFTMHPG
        GQGEDFSISSDDGLTFEGCLCVPEDSAVKTELLTEAHSSSFTMHPG
Subjt:  GQGEDFSISSDDGLTFEGCLCVPEDSAVKTELLTEAHSSSFTMHPG

KAA0041490.1 hypothetical protein E6C27_scaffold6G00780 [Cucumis melo var. makuwa]2.1e-6890.2Show/hide
Query:  MRQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVET
        MR +RWLEL+KDYDCEILYHPGKANVVADALSRKVAHSAALITK+APLL DFERAEIAV VGE++SQLAQLSVQPTLRQRIIVAQLND YLVEK RLVET
Subjt:  MRQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVET

Query:  GQGEDFSISSDDGLTFEGCLCVPEDSAVKTELLTEAHSSSFTMHPGSMKMYQD
        GQGEDFSIS DDGL FEG LCVPEDSAVKTELLTEAHSS FTMHPGS KMYQD
Subjt:  GQGEDFSISSDDGLTFEGCLCVPEDSAVKTELLTEAHSSSFTMHPGSMKMYQD

KAA0048134.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.8e-6888.89Show/hide
Query:  MRQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVET
        MRQ+RWLEL+KDYDCEILYHPGKANVVADALSRKVAHSAALITK+ PLL DFERAEIAV VGE++SQLAQ SVQPTLRQ+IIVAQLND YLVEK  LVET
Subjt:  MRQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVET

Query:  GQGEDFSISSDDGLTFEGCLCVPEDSAVKTELLTEAHSSSFTMHPGSMKMYQD
        GQGEDFSISS+DGL FEGCLCVPEDSAVKTELLTEAHSS FTMHPGS KMYQD
Subjt:  GQGEDFSISSDDGLTFEGCLCVPEDSAVKTELLTEAHSSSFTMHPGSMKMYQD

KAA0050011.1 pol protein [Cucumis melo var. makuwa]7.3e-6989.54Show/hide
Query:  MRQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVET
        MRQ+RWLEL+KDYDCE+LYHPGKANVVADALSRKVAHSAALITK+APLL DFERAEIAV VGE++SQLAQLSVQPTLRQRIIVAQLND YLVEK RLVET
Subjt:  MRQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVET

Query:  GQGEDFSISSDDGLTFEGCLCVPEDSAVKTELLTEAHSSSFTMHPGSMKMYQD
        GQGEDFSISSDDGLTFEG LCVP+DSA+KTELLTE HSS FTMHPGS KMYQD
Subjt:  GQGEDFSISSDDGLTFEGCLCVPEDSAVKTELLTEAHSSSFTMHPGSMKMYQD

TYK24364.1 putative polyprotein [Cucumis melo var. makuwa]2.1e-6890.2Show/hide
Query:  MRQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVET
        MR +RWLEL+KDYDCEILYHPGKANVVADALSRKVAHSAALITK+APLL DFERAEIAV VGE++SQLAQLSVQPTLRQRIIVAQLND YLVEK RLVET
Subjt:  MRQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVET

Query:  GQGEDFSISSDDGLTFEGCLCVPEDSAVKTELLTEAHSSSFTMHPGSMKMYQD
        GQGEDFSIS DDGL FEG LCVPEDSAVKTELLTEAHSS FTMHPGS KMYQD
Subjt:  GQGEDFSISSDDGLTFEGCLCVPEDSAVKTELLTEAHSSSFTMHPGSMKMYQD

TrEMBL top hitse value%identityAlignment
A0A5A7SSP9 DNA/RNA polymerases superfamily protein3.6e-74100Show/hide
Query:  MRQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVET
        MRQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVET
Subjt:  MRQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVET

Query:  GQGEDFSISSDDGLTFEGCLCVPEDSAVKTELLTEAHSSSFTMHPG
        GQGEDFSISSDDGLTFEGCLCVPEDSAVKTELLTEAHSSSFTMHPG
Subjt:  GQGEDFSISSDDGLTFEGCLCVPEDSAVKTELLTEAHSSSFTMHPG

A0A5A7TDX1 Reverse transcriptase1.0e-6890.2Show/hide
Query:  MRQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVET
        MR +RWLEL+KDYDCEILYHPGKANVVADALSRKVAHSAALITK+APLL DFERAEIAV VGE++SQLAQLSVQPTLRQRIIVAQLND YLVEK RLVET
Subjt:  MRQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVET

Query:  GQGEDFSISSDDGLTFEGCLCVPEDSAVKTELLTEAHSSSFTMHPGSMKMYQD
        GQGEDFSIS DDGL FEG LCVPEDSAVKTELLTEAHSS FTMHPGS KMYQD
Subjt:  GQGEDFSISSDDGLTFEGCLCVPEDSAVKTELLTEAHSSSFTMHPGSMKMYQD

A0A5A7TYM4 Ty3-gypsy retrotransposon protein1.3e-6888.89Show/hide
Query:  MRQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVET
        MRQ+RWLEL+KDYDCEILYHPGKANVVADALSRKVAHSAALITK+ PLL DFERAEIAV VGE++SQLAQ SVQPTLRQ+IIVAQLND YLVEK  LVET
Subjt:  MRQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVET

Query:  GQGEDFSISSDDGLTFEGCLCVPEDSAVKTELLTEAHSSSFTMHPGSMKMYQD
        GQGEDFSISS+DGL FEGCLCVPEDSAVKTELLTEAHSS FTMHPGS KMYQD
Subjt:  GQGEDFSISSDDGLTFEGCLCVPEDSAVKTELLTEAHSSSFTMHPGSMKMYQD

A0A5A7U8T4 Pol protein3.5e-6989.54Show/hide
Query:  MRQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVET
        MRQ+RWLEL+KDYDCE+LYHPGKANVVADALSRKVAHSAALITK+APLL DFERAEIAV VGE++SQLAQLSVQPTLRQRIIVAQLND YLVEK RLVET
Subjt:  MRQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVET

Query:  GQGEDFSISSDDGLTFEGCLCVPEDSAVKTELLTEAHSSSFTMHPGSMKMYQD
        GQGEDFSISSDDGLTFEG LCVP+DSA+KTELLTE HSS FTMHPGS KMYQD
Subjt:  GQGEDFSISSDDGLTFEGCLCVPEDSAVKTELLTEAHSSSFTMHPGSMKMYQD

A0A5D3DL91 Reverse transcriptase1.0e-6890.2Show/hide
Query:  MRQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVET
        MR +RWLEL+KDYDCEILYHPGKANVVADALSRKVAHSAALITK+APLL DFERAEIAV VGE++SQLAQLSVQPTLRQRIIVAQLND YLVEK RLVET
Subjt:  MRQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVET

Query:  GQGEDFSISSDDGLTFEGCLCVPEDSAVKTELLTEAHSSSFTMHPGSMKMYQD
        GQGEDFSIS DDGL FEG LCVPEDSAVKTELLTEAHSS FTMHPGS KMYQD
Subjt:  GQGEDFSISSDDGLTFEGCLCVPEDSAVKTELLTEAHSSSFTMHPGSMKMYQD

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein3.5e-0525.17Show/hide
Query:  RQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVETG
        R  RW   ++D++ EI Y PG AN +ADALSR       ++ +  P+  D E   I        + + Q+S+    + +++    ND+ L+  + L    
Subjt:  RQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVETG

Query:  QGEDFSISSDDGLTF--EGCLCVPEDSAVKTELLTEAHSSSFTMHPG
        +  + +I   DGL    +  + +P D+ +   ++ + H     +HPG
Subjt:  QGEDFSISSDDGLTF--EGCLCVPEDSAVKTELLTEAHSSSFTMHPG

P0CT35 Transposon Tf2-2 polyprotein3.5e-0525.17Show/hide
Query:  RQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVETG
        R  RW   ++D++ EI Y PG AN +ADALSR       ++ +  P+  D E   I        + + Q+S+    + +++    ND+ L+  + L    
Subjt:  RQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVETG

Query:  QGEDFSISSDDGLTF--EGCLCVPEDSAVKTELLTEAHSSSFTMHPG
        +  + +I   DGL    +  + +P D+ +   ++ + H     +HPG
Subjt:  QGEDFSISSDDGLTF--EGCLCVPEDSAVKTELLTEAHSSSFTMHPG

P0CT36 Transposon Tf2-3 polyprotein3.5e-0525.17Show/hide
Query:  RQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVETG
        R  RW   ++D++ EI Y PG AN +ADALSR       ++ +  P+  D E   I        + + Q+S+    + +++    ND+ L+  + L    
Subjt:  RQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVETG

Query:  QGEDFSISSDDGLTF--EGCLCVPEDSAVKTELLTEAHSSSFTMHPG
        +  + +I   DGL    +  + +P D+ +   ++ + H     +HPG
Subjt:  QGEDFSISSDDGLTF--EGCLCVPEDSAVKTELLTEAHSSSFTMHPG

P0CT41 Transposon Tf2-12 polyprotein3.5e-0525.17Show/hide
Query:  RQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVETG
        R  RW   ++D++ EI Y PG AN +ADALSR       ++ +  P+  D E   I        + + Q+S+    + +++    ND+ L+  + L    
Subjt:  RQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVETG

Query:  QGEDFSISSDDGLTF--EGCLCVPEDSAVKTELLTEAHSSSFTMHPG
        +  + +I   DGL    +  + +P D+ +   ++ + H     +HPG
Subjt:  QGEDFSISSDDGLTF--EGCLCVPEDSAVKTELLTEAHSSSFTMHPG

Q9UR07 Transposon Tf2-11 polyprotein3.5e-0525.17Show/hide
Query:  RQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVETG
        R  RW   ++D++ EI Y PG AN +ADALSR       ++ +  P+  D E   I        + + Q+S+    + +++    ND+ L+  + L    
Subjt:  RQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVETG

Query:  QGEDFSISSDDGLTF--EGCLCVPEDSAVKTELLTEAHSSSFTMHPG
        +  + +I   DGL    +  + +P D+ +   ++ + H     +HPG
Subjt:  QGEDFSISSDDGLTF--EGCLCVPEDSAVKTELLTEAHSSSFTMHPG

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCAGAAGAGGTGGCTTGAGTTAATGAAAGACTATGACTGCGAGATTCTGTATCACCCAGGTAAGGCAAATGTAGTAGCTGATGCGCTAAGTAGGAAGGTTGCACA
TTCAGCAGCGCTTATCACCAAGAAAGCTCCCTTACTCATAGATTTTGAGAGAGCTGAGATTGCAGTCTTAGTAGGGGAGCTTTCCTCACAGTTGGCTCAGTTGTCAGTGC
AGCCGACCTTGAGACAGAGGATTATTGTTGCTCAGCTAAATGATTCTTATTTGGTCGAGAAGCATCGTTTGGTAGAGACAGGGCAAGGTGAGGATTTCTCCATATCCTCT
GATGATGGCCTTACGTTTGAGGGATGTTTGTGTGTGCCGGAAGACAGTGCAGTCAAGACAGAGCTTTTGACTGAGGCTCACAGTTCTTCATTTACTATGCACCCTGGAAG
TATGAAGATGTACCAAGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGCAGAAGAGGTGGCTTGAGTTAATGAAAGACTATGACTGCGAGATTCTGTATCACCCAGGTAAGGCAAATGTAGTAGCTGATGCGCTAAGTAGGAAGGTTGCACA
TTCAGCAGCGCTTATCACCAAGAAAGCTCCCTTACTCATAGATTTTGAGAGAGCTGAGATTGCAGTCTTAGTAGGGGAGCTTTCCTCACAGTTGGCTCAGTTGTCAGTGC
AGCCGACCTTGAGACAGAGGATTATTGTTGCTCAGCTAAATGATTCTTATTTGGTCGAGAAGCATCGTTTGGTAGAGACAGGGCAAGGTGAGGATTTCTCCATATCCTCT
GATGATGGCCTTACGTTTGAGGGATGTTTGTGTGTGCCGGAAGACAGTGCAGTCAAGACAGAGCTTTTGACTGAGGCTCACAGTTCTTCATTTACTATGCACCCTGGAAG
TATGAAGATGTACCAAGACTAG
Protein sequenceShow/hide protein sequence
MRQKRWLELMKDYDCEILYHPGKANVVADALSRKVAHSAALITKKAPLLIDFERAEIAVLVGELSSQLAQLSVQPTLRQRIIVAQLNDSYLVEKHRLVETGQGEDFSISS
DDGLTFEGCLCVPEDSAVKTELLTEAHSSSFTMHPGSMKMYQD