CuGenDBv2

Gene ID	Cmc07g0192171
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr07:12624076..12625038
RNA-Seq Expression	Cmc07g0192171
Synteny	Cmc07g0192171
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0037291.1 pol protein [Cucumis melo var. makuwa]

4.9e-160

90.34

Show/hide

Query:  MRANKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVS
        +RA+KLLSQGTW ILASVVDTRE DVSLSSEPVVRDYPDVFPEELPGLPPHRE+EFAIELEPGTVPISRAPYR+APAELKE KVQLQELLDKGFIRPSVS
Subjt:  MRANKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVK +YPL RIDDLFDQLQGATVFSKIDL SGY QLRIKD    +  F    GHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFM

Query:  DLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFL
        DLMN+VF EFLDTFVIVFIDDILIYSKTE EHEEHLRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAG SVDPAKIKAVT W RPSTVSEVRSFL
Subjt:  DLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLT
        GLAGYYRRFVENFSRIATPLT
Subjt:  GLAGYYRRFVENFSRIATPLT

KAA0046085.1 pol protein [Cucumis melo var. makuwa]

2.5e-159

90.03

Show/hide

Query:  MRANKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVS
        +RA+KLLSQGTW ILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHRE+EFAIELEPGTVPISRAPYR+APAELKE KVQLQELLDKGFIRPSVS
Subjt:  MRANKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVK +YPL RIDDLFDQLQGATVFSKIDL SGY QLRIKD    +  F    GHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFM

Query:  DLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFL
        DLMN+VF EFLDTFVIVFIDDILIYSKTE EHEEHLRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAG SVDPAKI+AVT W RPSTVSEVRSFL
Subjt:  DLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLT
         LAGYYRRFVENFSRIATPLT
Subjt:  GLAGYYRRFVENFSRIATPLT

KAA0048687.1 pol protein [Cucumis melo var. makuwa]

1.4e-159

90.03

Show/hide

Query:  MRANKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVS
        +RA+KLLSQGTW ILASVVDTRE DVSLSSEPVVRDYPDVFPEELPGLPPHRE+EFAIELEPGTVPISRAPYR+APAELKE KVQLQELLDKGFIRPSVS
Subjt:  MRANKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVK +YPL RIDDLFDQLQGATVFSKIDL SGY QLRIKD    +  F    GHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFM

Query:  DLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFL
        DLMN+VF EFLDTFVIVFIDDILIYSKTE EHEEHLRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAG SVDPAKI+AVT W RPSTVSEVRSFL
Subjt:  DLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLT
        GLAGYYRRFVENFSRIATPLT
Subjt:  GLAGYYRRFVENFSRIATPLT

KAA0066266.1 pol protein [Cucumis melo var. makuwa]

1.4e-159

90.03

Show/hide

Query:  MRANKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVS
        +RA+KLLSQGTW ILASVVDTRE DVSLSSEPVVRDYPDVFPEELPGLPPHRE+EFAIELEPGTVPISRAPYR+APAELKE KVQLQELLDKGFIRPSVS
Subjt:  MRANKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVK +YPL RIDDLFDQLQGATVFSKIDL SGY QLRIKD    +  F    GHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFM

Query:  DLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFL
        DLMN+VF EFLDTFVIVFIDDILIYSKTE EHEEHLRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAG SVDPAKI+AVT W RPSTVSEVRSFL
Subjt:  DLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLT
        GLAGYYRRFVENFSRIATPLT
Subjt:  GLAGYYRRFVENFSRIATPLT

TYK01613.1 pol protein [Cucumis melo var. makuwa]

1.4e-159

90.03

Show/hide

Query:  MRANKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVS
        +RA+KLLSQGTW ILASVVDTRE DVSLSSEPVVRDYPDVFPEELPGLPPHRE+EFAIELEPGTVPISRAPYR+APAELKE KVQLQELLDKGFIRPSVS
Subjt:  MRANKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVK +YPL RIDDLFDQLQGATVFSKIDL SGY QLRIKD    +  F    GHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFM

Query:  DLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFL
        DLMN+VF EFLDTFVIVFIDDILIYSKTE EHEEHLRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAG SVDPAKI+AVT W RPSTVSEVRSFL
Subjt:  DLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLT
        GLAGYYRRFVENFSRIATPLT
Subjt:  GLAGYYRRFVENFSRIATPLT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T6R9 Reverse transcriptase

2.4e-160

90.34

Show/hide

Query:  MRANKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVS
        +RA+KLLSQGTW ILASVVDTRE DVSLSSEPVVRDYPDVFPEELPGLPPHRE+EFAIELEPGTVPISRAPYR+APAELKE KVQLQELLDKGFIRPSVS
Subjt:  MRANKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVK +YPL RIDDLFDQLQGATVFSKIDL SGY QLRIKD    +  F    GHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFM

Query:  DLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFL
        DLMN+VF EFLDTFVIVFIDDILIYSKTE EHEEHLRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAG SVDPAKIKAVT W RPSTVSEVRSFL
Subjt:  DLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLT
        GLAGYYRRFVENFSRIATPLT
Subjt:  GLAGYYRRFVENFSRIATPLT

A0A5A7TXE4 Reverse transcriptase

1.2e-159

90.03

Show/hide

Query:  MRANKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVS
        +RA+KLLSQGTW ILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHRE+EFAIELEPGTVPISRAPYR+APAELKE KVQLQELLDKGFIRPSVS
Subjt:  MRANKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVK +YPL RIDDLFDQLQGATVFSKIDL SGY QLRIKD    +  F    GHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFM

Query:  DLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFL
        DLMN+VF EFLDTFVIVFIDDILIYSKTE EHEEHLRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAG SVDPAKI+AVT W RPSTVSEVRSFL
Subjt:  DLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLT
         LAGYYRRFVENFSRIATPLT
Subjt:  GLAGYYRRFVENFSRIATPLT

A0A5A7U330 Reverse transcriptase

7.0e-160

90.03

Show/hide

Query:  MRANKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVS
        +RA+KLLSQGTW ILASVVDTRE DVSLSSEPVVRDYPDVFPEELPGLPPHRE+EFAIELEPGTVPISRAPYR+APAELKE KVQLQELLDKGFIRPSVS
Subjt:  MRANKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVK +YPL RIDDLFDQLQGATVFSKIDL SGY QLRIKD    +  F    GHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFM

Query:  DLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFL
        DLMN+VF EFLDTFVIVFIDDILIYSKTE EHEEHLRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAG SVDPAKI+AVT W RPSTVSEVRSFL
Subjt:  DLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLT
        GLAGYYRRFVENFSRIATPLT
Subjt:  GLAGYYRRFVENFSRIATPLT

A0A5A7VIT9 Reverse transcriptase

7.0e-160

90.03

Show/hide

Query:  MRANKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVS
        +RA+KLLSQGTW ILASVVDTRE DVSLSSEPVVRDYPDVFPEELPGLPPHRE+EFAIELEPGTVPISRAPYR+APAELKE KVQLQELLDKGFIRPSVS
Subjt:  MRANKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVK +YPL RIDDLFDQLQGATVFSKIDL SGY QLRIKD    +  F    GHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFM

Query:  DLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFL
        DLMN+VF EFLDTFVIVFIDDILIYSKTE EHEEHLRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAG SVDPAKI+AVT W RPSTVSEVRSFL
Subjt:  DLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLT
        GLAGYYRRFVENFSRIATPLT
Subjt:  GLAGYYRRFVENFSRIATPLT

A0A5D3BPI1 Reverse transcriptase

7.0e-160

90.03

Show/hide

Query:  MRANKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVS
        +RA+KLLSQGTW ILASVVDTRE DVSLSSEPVVRDYPDVFPEELPGLPPHRE+EFAIELEPGTVPISRAPYR+APAELKE KVQLQELLDKGFIRPSVS
Subjt:  MRANKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVS

Query:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFM
        PWGAPVLFVKKKDGSMRLCIDYRELNKVTVK +YPL RIDDLFDQLQGATVFSKIDL SGY QLRIKD    +  F    GHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFM

Query:  DLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFL
        DLMN+VF EFLDTFVIVFIDDILIYSKTE EHEEHLRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAG SVDPAKI+AVT W RPSTVSEVRSFL
Subjt:  DLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLT
        GLAGYYRRFVENFSRIATPLT
Subjt:  GLAGYYRRFVENFSRIATPLT

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

5.3e-48

38.04

Show/hide

Query:  YRLAPAELKEFKVQLQELLDKGFIRPSVSPWGAPVLFV-KKKDGS----MRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRI
        Y    A  +E + Q+Q++L++G IR S SP+ +P+  V KK+D S     R+ IDYR+LN++TV  ++P+  +D++  +L     F+ IDL  G+ Q+ +
Subjt:  YRLAPAELKEFKVQLQELLDKGFIRPSVSPWGAPVLFV-KKKDGS----MRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRI

Query:  KDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFMDLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLG
              +  F    GHYE++ M FGL NAPA F   MN +    L+   +V++DDI+++S +  EH + L +V E L    L  +  KCEF  ++ +FLG
Subjt:  KDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFMDLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLG

Query:  HVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLT
        HV++  G   +P KI+A+  +P P+   E+++FLGL GYYR+F+ NF+ IA P+T
Subjt:  HVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLT

P0CT41 Transposon Tf2-12 polyprotein

2.2e-46

35.61

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Query:  EELPGLPPHREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTKYPLRRIDDL
        E+LP   P + +EF +EL      +    Y L P +++    ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK      YPL  I+ L
Subjt:  EELPGLPPHREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTKYPLRRIDDL

Query:  FDQLQGATVFSKIDLGSGYQL-RIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFMDLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLET
          ++QG+T+F+K+DL S Y L R++     +  F    G +E++VM +G++ APA F   +N + GE  ++ V+ ++DDILI+SK+E+EH +H++ VL+ 
Subjt:  FDQLQGATVFSKIDLGSGYQL-RIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFMDLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLET

Query:  LRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPL
        L+   L    +KCEF   QV F+G+ +S+ G +     I  V  W +P    E+R FLG   Y R+F+   S++  PL
Subjt:  LRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPL

P20825 Retrovirus-related Pol polyprotein from transposon 297

8.7e-51

38.7

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Query:  PISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD-----GSMRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSG
        PI    Y LA     E + Q+QE+L++G IR S SP+ +P   V KK         R+ IDYR+LN++T+  +YP+  +D++  +L     F+ IDL  G
Subjt:  PISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD-----GSMRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSG

Query:  Y-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFMDLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLK
        + Q+ + +    +  F    GHYE++ M FGL NAPA F   MN +    L+   +V++DDI+I+S + TEH   +++V   L    L  +  KCEF  K
Subjt:  Y-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFMDLMNKVFGEFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLK

Query:  QVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLT
        + +FLGH+V+  G   +P K+KA+ S+P P+   E+R+FLGL GYYR+F+ N++ IA P+T
Subjt:  QVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLT

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

1.0e-51

39.02

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Query:  YPDVFPEELPGLPP---HREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTK
        Y ++   +LP  P    +  ++  IE++PG       PY +     +E    +Q+LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T+   
Subjt:  YPDVFPEELPGLPP---HREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTK

Query:  YPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFMDLMNKVFGEFLDTFVIVFIDDILIYSKTETEHE
        +PL RID+L  ++  A +F+ +DL SGY Q+ ++ +   +  FV   G YE+ VM FGL NAP+ F   M   F +    FV V++DDILI+S++  EH 
Subjt:  YPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFMDLMNKVFGEFLDTFVIVFIDDILIYSKTETEHE

Query:  EHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPL
        +HL  VLE L+   L  K  KC+F  ++  FLG+ +     +    K  A+  +P P TV + + FLG+  YYRRF+ N S+IA P+
Subjt:  EHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPL

Q99315 Transposon Ty3-G Gag-Pol polyprotein

1.0e-51

39.02

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Query:  YPDVFPEELPGLPP---HREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTK
        Y ++   +LP  P    +  ++  IE++PG       PY +     +E    +Q+LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T+   
Subjt:  YPDVFPEELPGLPP---HREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKTK

Query:  YPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFMDLMNKVFGEFLDTFVIVFIDDILIYSKTETEHE
        +PL RID+L  ++  A +F+ +DL SGY Q+ ++ +   +  FV   G YE+ VM FGL NAP+ F   M   F +    FV V++DDILI+S++  EH 
Subjt:  YPLRRIDDLFDQLQGATVFSKIDLGSGY-QLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFMDLMNKVFGEFLDTFVIVFIDDILIYSKTETEHE

Query:  EHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPL
        +HL  VLE L+   L  K  KC+F  ++  FLG+ +     +    K  A+  +P P TV + + FLG+  YYRRF+ N S+IA P+
Subjt:  EHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPL

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

8.2e-20

48.31

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Query:  HLRMVLETLRANKLYAKFSKCEFWLKQVSFLG--HVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLT
        HL MVL+    ++ YA   KC F   Q+++LG  H++S  G S DPAK++A+  WP P   +E+R FLGL GYYRRFV+N+ +I  PLT
Subjt:  HLRMVLETLRANKLYAKFSKCEFWLKQVSFLG--HVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLT

Sequences

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CDS sequence

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ATGAGGGCCAACAAACTGCTTAGTCAGGGTACTTGGAGTATCTTAGCGAGTGTAGTGGATACTAGAGAGGTTGATGTATCCTTGTCATCAGAACCAGTGGTGAGGGACTA
TCCGGATGTCTTTCCTGAAGAACTTCCAGGGTTACCTCCTCACAGAGAGATTGAGTTTGCCATAGAGCTAGAGCCTGGTACGGTTCCTATATCCAGAGCTCCATACAGAT
TGGCCCCAGCAGAACTAAAAGAGTTTAAAGTGCAGTTACAGGAGTTGCTTGATAAAGGCTTCATTCGGCCGAGTGTGTCACCTTGGGGTGCACCAGTTTTATTTGTTAAG
AAGAAGGATGGATCGATGCGCCTATGTATTGACTACAGGGAGTTGAATAAGGTAACCGTTAAGACCAAATATCCCTTGCGCAGGATCGACGATTTGTTTGACCAGTTACA
GGGAGCTACAGTATTCTCTAAGATCGACCTTGGGTCGGGATATCAGCTGAGGATTAAGGATAGAATGTACCAAAGACAGCCTTTCGTTAAAGATATTGGGCACTATGAGT
TTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTCATGGATTTGATGAACAAAGTGTTTGGAGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGAT
ATTTTGATATATTCTAAGACAGAGACCGAGCATGAGGAGCATTTACGCATGGTTCTAGAAACCCTTCGAGCTAATAAATTATATGCAAAGTTCTCAAAATGTGAGTTTTG
GTTGAAGCAGGTATCCTTTCTAGGCCATGTGGTTTCTAAAGCTGGTGATTCGGTGGATCCAGCTAAGATAAAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGTCAGTG
AGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTACCGACGATTTGTGGAGAACTTTTCGCGTATAGCTACCCCTCTTACTTAG

mRNA sequence

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Protein sequence

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MRANKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRLAPAELKEFKVQLQELLDKGFIRPSVSPWGAPVLFVK
KKDGSMRLCIDYRELNKVTVKTKYPLRRIDDLFDQLQGATVFSKIDLGSGYQLRIKDRMYQRQPFVKDIGHYEFIVMSFGLTNAPAVFMDLMNKVFGEFLDTFVIVFIDD
ILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGDSVDPAKIKAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLT

Cmc07g0192171 (gene) of Melon (Charmono) v1.1 genome