; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc07g0192971 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc07g0192971
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein
Genome locationCMiso1.1chr07:14207893..14208633
RNA-Seq ExpressionCmc07g0192971
SyntenyCmc07g0192971
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RDX95126.1 Retrovirus-related Pol polyprotein, partial [Mucuna pruriens]8.9e-9367.52Show/hide
Query:  MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAP
        MT++KN Q E VP  + NSW +CIDYR+LN+AT KDHFPLPF+D+M+E++ GKS++C LD FSG+ QI IA  DQHKT FTC FGTFA+ RMPFGLCNAP
Subjt:  MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAP

Query:  TTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDV
        +TFQRCM+SIF+D +   +EVFMDDF  Y ++FD+CLN+   +LKRC+DTNLVL FEKCHFM + GIVLGHLVS++GIEVDKAKID I + P PT +++V
Subjt:  TTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDV

Query:  RSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF
        RSFLG A FYRRFIKDFSK+ALPL+ LL+KDV F
Subjt:  RSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF

RZB41284.1 Transposon Ty3-G Gag-Pol polyprotein [Glycine soja]8.9e-9366.24Show/hide
Query:  MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAP
        +T+++N + E +P  V NSW +CIDYR+LN+ T KDHFPLPF+D+M+E+L GKS++C LD FSG+ QI IA  DQ KT FTC FGTFA++RMPFGLCNAP
Subjt:  MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAP

Query:  TTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDV
         TFQRCM+SIF+DF+   IEVFMDDF  YG +FD CLNS E +L RCI+TNLVL FEKCHFM   GIVLGH++S+KGIEVD AKI  I   PYP+C+++V
Subjt:  TTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDV

Query:  RSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF
        RSFLG A FYRRFI+DFSK+ALPL+NLL+K+V F
Subjt:  RSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF

RZB46718.1 Transposon Ty3-G Gag-Pol polyprotein [Glycine soja]4.0e-9366.67Show/hide
Query:  MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAP
        +T+++N +GE +P  V NSW +CIDYR+LN+ T KDHFPLPF+D+M+E L GKS++C LD FSG+ QI IA  DQ KT FTC FGTFA++RMPFGLCNAP
Subjt:  MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAP

Query:  TTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDV
         TFQRCM+SIF+DF+   IEVFMDDF  YG +FD CLNS E +L RCI+TNLVL FEKCHFM   GIVLGH++S+KGIEVD AKI  I   PYP+C+++V
Subjt:  TTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDV

Query:  RSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF
        RSFLG A FYRRFI+DFSK+ALPL NLL+K+V F
Subjt:  RSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF

XP_021603241.1 uncharacterized protein LOC110608326 [Manihot esculenta]2.8e-9467.52Show/hide
Query:  MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAP
        +T+  NS+GE VP  V N W +CIDYRKLN  T KDHFPLPF+D+M+E+L GKS+FC LD FSGFYQIP+A  DQ KT FTC FGTFA++RMPFGLCNAP
Subjt:  MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAP

Query:  TTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDV
         TFQRCM+SIF++F+ K IEVFMDDF  YG +FD CL +   ILKRC+++NLVL +EKCHFM   G++LGH VS++GIEVDKAK+D I++ PYPTC++D+
Subjt:  TTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDV

Query:  RSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF
        RSFLG A FYRRFIKDFS+IA PL  LL+KDVPF
Subjt:  RSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF

XP_021603805.1 uncharacterized protein LOC110608820, partial [Manihot esculenta]2.1e-9467.09Show/hide
Query:  MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAP
        +TIV NS+GE VP  V N W +C+DYRKLN  T KDHFPLPF+D+M+E+L GKS++C LD +SGFYQIP+A  DQ KT FTC FGTFAF+RMPFGLCNAP
Subjt:  MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAP

Query:  TTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDV
         TFQRCM+SIF+D++ K IEVFMDDF  YG +F  C+ + E IL RC++TNLVL +EKCHFM +HG++LGH+VS+KGIEVDKAK+D I+N PYPT ++++
Subjt:  TTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDV

Query:  RSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF
        RSFLG A FYRRFIKDFSKI  PL  LL++DVPF
Subjt:  RSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF

TrEMBL top hitse value%identityAlignment
A0A0L9TXH6 Reverse transcriptase5.6e-9366.24Show/hide
Query:  MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAP
        +T++KN + E +P  V NSW +CIDYR+LN+AT KDHFPLPF+D+M+E+L GKS++C LD FSG++QI I+  DQ KT FTC FGTFA++RMPFGLCNAP
Subjt:  MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAP

Query:  TTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDV
         TFQRCMLSIF+DF+   IEVFMDDF  YG +FD+CL+S + +L+RCIDTNLVL FEKCHFM   G+VLGH++SSKGIEVD AKI  I   PYP+C+++V
Subjt:  TTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDV

Query:  RSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF
        RSFLG A FYRRFIKDFSK  LPL+ LL+KD+ F
Subjt:  RSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF

A0A371GXE8 Retrovirus-related Pol polyprotein (Fragment)4.3e-9367.52Show/hide
Query:  MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAP
        MT++KN Q E VP  + NSW +CIDYR+LN+AT KDHFPLPF+D+M+E++ GKS++C LD FSG+ QI IA  DQHKT FTC FGTFA+ RMPFGLCNAP
Subjt:  MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAP

Query:  TTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDV
        +TFQRCM+SIF+D +   +EVFMDDF  Y ++FD+CLN+   +LKRC+DTNLVL FEKCHFM + GIVLGHLVS++GIEVDKAKID I + P PT +++V
Subjt:  TTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDV

Query:  RSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF
        RSFLG A FYRRFIKDFSK+ALPL+ LL+KDV F
Subjt:  RSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF

A0A445EY74 Reverse transcriptase4.3e-9366.24Show/hide
Query:  MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAP
        +T+++N + E +P  V NSW +CIDYR+LN+ T KDHFPLPF+D+M+E+L GKS++C LD FSG+ QI IA  DQ KT FTC FGTFA++RMPFGLCNAP
Subjt:  MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAP

Query:  TTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDV
         TFQRCM+SIF+DF+   IEVFMDDF  YG +FD CLNS E +L RCI+TNLVL FEKCHFM   GIVLGH++S+KGIEVD AKI  I   PYP+C+++V
Subjt:  TTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDV

Query:  RSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF
        RSFLG A FYRRFI+DFSK+ALPL+NLL+K+V F
Subjt:  RSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF

A0A445FCZ8 Reverse transcriptase1.9e-9366.67Show/hide
Query:  MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAP
        +T+++N +GE +P  V NSW +CIDYR+LN+ T KDHFPLPF+D+M+E L GKS++C LD FSG+ QI IA  DQ KT FTC FGTFA++RMPFGLCNAP
Subjt:  MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAP

Query:  TTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDV
         TFQRCM+SIF+DF+   IEVFMDDF  YG +FD CLNS E +L RCI+TNLVL FEKCHFM   GIVLGH++S+KGIEVD AKI  I   PYP+C+++V
Subjt:  TTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDV

Query:  RSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF
        RSFLG A FYRRFI+DFSK+ALPL NLL+K+V F
Subjt:  RSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF

A0A445LR48 Transposon Ty3-G Gag-Pol polyprotein4.3e-9366.24Show/hide
Query:  MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAP
        +T+++N + E +P  V NSW +CIDYR+LN+ T KDHFPLPF+D+M+E+L GKS++C LD FSG+ QI IA  DQ KT FTC FGTFA++RMPFGLCNAP
Subjt:  MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAP

Query:  TTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDV
         TFQRCM+SIF+DF+   IEVFMDDF  YG +FD CLNS E +L RCI+TNLVL FEKCHFM   GIVLGH++S+KGIEVD AKI  I   PYP+C+++V
Subjt:  TTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDV

Query:  RSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF
        RSFLG A FYRRFI+DFSK+ALPL+NLL+K+V F
Subjt:  RSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.62.1e-4441.15Show/hide
Query:  IDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIGKYIEVFM
        IDYRKLNE T+ D  P+P +DE++ +LG  +YF  +D   GF+QI +      KT F+ + G + + RMPFGL NAP TFQRCM  I    + K+  V++
Subjt:  IDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIGKYIEVFM

Query:  DDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRFIKDFSKIALP
        DD I +  + D  L S  L+ ++    NL L  +KC F+      LGH+++  GI+ +  KI+ IQ +P PT  K++++FLG   +YR+FI +F+ IA P
Subjt:  DDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRFIKDFSKIALP

Query:  LTNLLKKDV
        +T  LKK++
Subjt:  LTNLLKKDV

P10394 Retrovirus-related Pol polyprotein from transposon 4121.6e-3939.53Show/hide
Query:  WCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIGKYI
        W + IDYR++N+  L D FPLP +D++++QLG   YF  LD  SGF+QI +    +  T F+   G++ F R+PFGL  AP +FQR M   F+       
Subjt:  WCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIGKYI

Query:  EVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRFIKDFSK
         ++MDD I  G +    L +   +  +C + NL L+ EKC F       LGH  + KGI  D  K D IQN+P P      R F+    +YRRFIK+F+ 
Subjt:  EVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRFIKDFSK

Query:  IALPLTNLLKKDVPF
         +  +T L KK+VPF
Subjt:  IALPLTNLLKKDVPF

P10401 Retrovirus-related Pol polyprotein from transposon gypsy2.4e-4040.87Show/hide
Query:  MCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIGKYIEV
        + ID+RKLNE T+ D +P+P +  ++  LG   +F  LD  SG++QI +A  D+ KT F+   G + F R+PFGL NA + FQR +  +  + IGK   V
Subjt:  MCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIGKYIEV

Query:  FMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRFIKDFSKIA
        ++DD I + +N    +   + +LK  ID N+ +  EK  F       LG +VS  G + D  K+  IQ +P P C+  VRSFLG A +YR FIKDF+ IA
Subjt:  FMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRFIKDFSKIA

Query:  LPLTNLLK
         P+T++LK
Subjt:  LPLTNLLK

P20825 Retrovirus-related Pol polyprotein from transposon 2972.5e-4540.65Show/hide
Query:  SNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIG
        +N + + IDYRKLNE T+ D +P+P +DE++ +LG   YF  +D   GF+QI +      KT F+ + G + + RMPFGL NAP TFQRCM +I    + 
Subjt:  SNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIG

Query:  KYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRFIKD
        K+  V++DD I +  +    LNS +L+  +  D NL L  +KC F+      LGH+V+  GI+ +  K+  I ++P PT  K++R+FLG   +YR+FI +
Subjt:  KYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRFIKD

Query:  FSKIALPLTNLLKK
        ++ IA P+T+ LKK
Subjt:  FSKIALPLTNLLKK

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus8.2e-4137.5Show/hide
Query:  PYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTD
        P     + M +D+++LN  T+ D +P+P ++  +  LG   YF  LD  SGF+QI +   D  KT F+   G + F R+PFGL NAP  FQR +  I  +
Subjt:  PYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTD

Query:  FIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRF
         IGK   V++DD I + +++D+   +  L+L      NL +  EK HF+ +    LG++V++ GI+ D  K+  I   P PT +K+++ FLG   +YR+F
Subjt:  FIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRF

Query:  IKDFSKIALPLTNLLK
        I+D++K+A PLTNL +
Subjt:  IKDFSKIALPLTNLLK

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein5.3e-1140.26Show/hide
Query:  EKCHFMASHGIVLG--HLVSSKGIEVDKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRFIKDFSKIALPLTNLLKKD
        +KC F       LG  H++S +G+  D AK++ +  +P P    ++R FLG   +YRRF+K++ KI  PLT LLKK+
Subjt:  EKCHFMASHGIVLG--HLVSSKGIEVDKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRFIKDFSKIALPLTNLLKKD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCATTGTGAAAAATAGCCAAGGTGAGTTCGTTCCTCCTTATGTTTCAAATAGTTGGTGCATGTGTATCGATTATAGAAAGCTAAACGAGGCAACTCTTAAA
GATCACTTCCCTTTACCTTTTCTAGATGAAATGATAGAACAATTAGGAGGAAAATCTTACTTTTGCTTGCTAGATGAATTTTCTGGCTTTTATCAAATACCCATA
GCATGCATGGACCAACATAAGACAATTTTTACATGTGAGTTTGGAACTTTTGCTTTTAAAAGAATGCCTTTTGGACTATGTAATGCTCCTACAACATTTCAACGA
TGCATGTTAAGCATATTCACTGATTTCATAGGAAAATACATAGAAGTGTTCATGGATGATTTTATAGGCTATGGGAAAAATTTTGATTCTTGCTTGAATAGTTCA
GAGTTGATTTTAAAGAGATGTATTGATACTAACTTAGTGCTTTACTTTGAAAAATGTCATTTCATGGCTTCTCACGGTATAGTACTAGGTCACTTAGTATCATCT
AAGGGAATAGAAGTTGACAAAGCTAAAATCGATTTCATTCAAAACTTTCCCTATCCCACTTGTTTAAAGGATGTTAGATCATTTTTGGGTAGTGCCAGATTTTAT
AGAAGGTTCATTAAAGACTTTTCCAAGATAGCTTTGCCTTTGACAAATTTGCTTAAAAAAGATGTCCCTTTTGCAATGATGATAAATGTATGCATGCTTTTGATA
CTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACCATTGTGAAAAATAGCCAAGGTGAGTTCGTTCCTCCTTATGTTTCAAATAGTTGGTGCATGTGTATCGATTATAGAAAGCTAAACGAGGCAACTCTTAAA
GATCACTTCCCTTTACCTTTTCTAGATGAAATGATAGAACAATTAGGAGGAAAATCTTACTTTTGCTTGCTAGATGAATTTTCTGGCTTTTATCAAATACCCATA
GCATGCATGGACCAACATAAGACAATTTTTACATGTGAGTTTGGAACTTTTGCTTTTAAAAGAATGCCTTTTGGACTATGTAATGCTCCTACAACATTTCAACGA
TGCATGTTAAGCATATTCACTGATTTCATAGGAAAATACATAGAAGTGTTCATGGATGATTTTATAGGCTATGGGAAAAATTTTGATTCTTGCTTGAATAGTTCA
GAGTTGATTTTAAAGAGATGTATTGATACTAACTTAGTGCTTTACTTTGAAAAATGTCATTTCATGGCTTCTCACGGTATAGTACTAGGTCACTTAGTATCATCT
AAGGGAATAGAAGTTGACAAAGCTAAAATCGATTTCATTCAAAACTTTCCCTATCCCACTTGTTTAAAGGATGTTAGATCATTTTTGGGTAGTGCCAGATTTTAT
AGAAGGTTCATTAAAGACTTTTCCAAGATAGCTTTGCCTTTGACAAATTTGCTTAAAAAAGATGTCCCTTTTGCAATGATGATAAATGTATGCATGCTTTTGATA
CTTTAA
Protein sequenceShow/hide protein sequence
MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAPTTFQR
CMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDVRSFLGSARFY
RRFIKDFSKIALPLTNLLKKDVPFAMMINVCMLLIL