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Cmc07g0193221 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc07g0193221
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr07:14566506..14567045
RNA-Seq ExpressionCmc07g0193221
SyntenyCmc07g0193221
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037114.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.3e-8586.36Show/hide
Query:  SVEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDAS
        S+EGIC DP+K EA DK ERPTS+T+I+SFLGL+ YYR+ VEGFSKLALPLTNLTRKNVKFEW DAC WSFQELKKRLVT  +LT+LTPGIEFEIY DAS
Subjt:  SVEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDAS

Query:  HQGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR
        HQGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELA +VLALKLWRHYLYGERCHIFT+HKSLKYIFDQKE+NLR
Subjt:  HQGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR

KAA0042458.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.8e-8889.14Show/hide
Query:  VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASH
        +EGIC DPQKTEA DKW+RP SVT+IRSFLGLAGYYRRF+EGFSKLALPLTNLTRKNVKFEW DACE SFQELKKRLVTA +LT+  PG+EFEIYCDASH
Subjt:  VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASH

Query:  QGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR
        QGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAA+VLALKLWRHYLYGERCHIF +HKSLKYIFDQKE+NLR
Subjt:  QGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR

KAA0045302.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.8e-82100Show/hide
Query:  VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASH
        VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASH
Subjt:  VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASH

Query:  QGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLY
        QGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLY
Subjt:  QGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLY

KAA0047049.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.2e-8386.29Show/hide
Query:  VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASH
        VE I   PQKTEA DKWERPTSVT+IRSFLGLAGYYRRFVEGFSKL+L LTNLTRKNVKF+W DACE S QELKK+LVT  +LT+ TPG+EF+IYCDASH
Subjt:  VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASH

Query:  QGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR
        QGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAA+VLALKLW HYLYGERCHIFT+HKSLKYIFDQKE+NLR
Subjt:  QGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR

TYK13961.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.3e-8586.36Show/hide
Query:  SVEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDAS
        S+EGIC DP+K EA DK ERPTS+T+I+SFLGL+ YYR+ VEGFSKLALPLTNLTRKNVKFEW DAC WSFQELKKRLVT  +LT+LTPGIEFEIY DAS
Subjt:  SVEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDAS

Query:  HQGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR
        HQGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELA +VLALKLWRHYLYGERCHIFT+HKSLKYIFDQKE+NLR
Subjt:  HQGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR

TrEMBL top hitse value%identityAlignment
A0A5A7T0V4 Putative DNA/RNA polymerases superfamily protein6.3e-8686.36Show/hide
Query:  SVEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDAS
        S+EGIC DP+K EA DK ERPTS+T+I+SFLGL+ YYR+ VEGFSKLALPLTNLTRKNVKFEW DAC WSFQELKKRLVT  +LT+LTPGIEFEIY DAS
Subjt:  SVEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDAS

Query:  HQGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR
        HQGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELA +VLALKLWRHYLYGERCHIFT+HKSLKYIFDQKE+NLR
Subjt:  HQGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR

A0A5A7TPK6 Retrotransposable element Tf28.6e-83100Show/hide
Query:  VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASH
        VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASH
Subjt:  VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASH

Query:  QGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLY
        QGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLY
Subjt:  QGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLY

A0A5A7U0P3 Retrotransposable element Tf25.9e-8486.29Show/hide
Query:  VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASH
        VE I   PQKTEA DKWERPTSVT+IRSFLGLAGYYRRFVEGFSKL+L LTNLTRKNVKF+W DACE S QELKK+LVT  +LT+ TPG+EF+IYCDASH
Subjt:  VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASH

Query:  QGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR
        QGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAA+VLALKLW HYLYGERCHIFT+HKSLKYIFDQKE+NLR
Subjt:  QGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR

A0A5D3CQ91 Putative DNA/RNA polymerases superfamily protein6.3e-8686.36Show/hide
Query:  SVEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDAS
        S+EGIC DP+K EA DK ERPTS+T+I+SFLGL+ YYR+ VEGFSKLALPLTNLTRKNVKFEW DAC WSFQELKKRLVT  +LT+LTPGIEFEIY DAS
Subjt:  SVEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDAS

Query:  HQGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR
        HQGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELA +VLALKLWRHYLYGERCHIFT+HKSLKYIFDQKE+NLR
Subjt:  HQGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR

A0A5D3DHF7 Putative DNA/RNA polymerases superfamily protein1.4e-8889.14Show/hide
Query:  VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASH
        +EGIC DPQKTEA DKW+RP SVT+IRSFLGLAGYYRRF+EGFSKLALPLTNLTRKNVKFEW DACE SFQELKKRLVTA +LT+  PG+EFEIYCDASH
Subjt:  VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASH

Query:  QGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR
        QGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAA+VLALKLWRHYLYGERCHIF +HKSLKYIFDQKE+NLR
Subjt:  QGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.4e-2838.15Show/hide
Query:  EGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWID-ACEWSFQELKKRLVTASILTILTPGIEFEIYCDASH
        +GI  +P+K EA  K+  PT   +I++FLGL GYYR+F+  F+ +A P+T   +KN+K +  +   + +F++LK  +    IL +     +F +  DAS 
Subjt:  EGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWID-ACEWSFQELKKRLVTASILTILTPGIEFEIYCDASH

Query:  QGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEIN
          LG VL Q G  ++Y SR L +HE NY T + EL A+V A K +RHYL G    I ++H+ L +++  K+ N
Subjt:  QGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEIN

P10394 Retrovirus-related Pol polyprotein from transposon 4122.3e-2437.06Show/hide
Query:  EGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASHQ
        +GI  D +K +    +  P      R F+    YYRRF++ F+  +  +T L +KNV FEW D C+ +F  LK +L+  ++L       EF I  DAS Q
Subjt:  EGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASHQ

Query:  GLGCVLMQKGK----VVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIF
          G VL Q        VAYASR   K E N  T + ELAA+  A+  +R Y+YG+   + T+H+ L Y+F
Subjt:  GLGCVLMQKGK----VVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIF

P10401 Retrovirus-related Pol polyprotein from transposon gypsy7.9e-2534.21Show/hide
Query:  SVEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTR-----------KNVKFEWIDACEWSFQELKKRLVTASILTILTP
        S +G  +DP+K +A  ++  P  V K+RSFLGLA YYR F++ F+ +A P+T++ +           K +  E+ +    +FQ L+  L +  ++ +  P
Subjt:  SVEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTR-----------KNVKFEWIDACEWSFQELKKRLVTASILTILTP

Query:  GIE--FEIYCDASHQGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGER-CHIFTNHKSLKYIFDQKEINLR
          +  F++  DAS  G+G VL Q+G+ +   SR LK+ E NY T++ EL A+V AL   +++LYG R  +IFT+H+ L +    +  N +
Subjt:  GIE--FEIYCDASHQGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGER-CHIFTNHKSLKYIFDQKEINLR

P20825 Retrovirus-related Pol polyprotein from transposon 2973.5e-2536.57Show/hide
Query:  EGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNV-----KFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYC
        +GI  +P K +A   +  PT   +IR+FLGL GYYR+F+  ++ +A P+T+  +K       K E+I+A    F++LK  ++   IL +     +F +  
Subjt:  EGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNV-----KFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYC

Query:  DASHQGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKE
        DAS+  LG VL Q G  +++ SR L  HE NY   + EL A+V A K +RHYL G +  I ++H+ L+++ + KE
Subjt:  DASHQGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKE

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.1e-2333.85Show/hide
Query:  SVEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTR-----------KNVKFEWIDACEWSFQELKKRLVTASILTILTP
        + +GI ADP+K  A  +   PTSV +++ FLG+  YYR+F++ ++K+A PLTNLTR             V     +    SF +LK  L ++ IL     
Subjt:  SVEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTR-----------KNVKFEWIDACEWSFQELKKRLVTASILTILTP

Query:  GIEFEIYCDASHQGLGCVLMQ----KGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGE-RCHIFTNHKSLKYIFDQKEINLR
           F +  DAS+  +G VL Q    + + +AY SR L K E NY T + E+ A++ +L   R YLYG     ++T+H+ L +    +  N +
Subjt:  GIEFEIYCDASHQGLGCVLMQ----KGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGE-RCHIFTNHKSLKYIFDQKEINLR

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.5e-1543.02Show/hide
Query:  SVEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTI
        S EG+ ADP K EA   W  P + T++R FLGL GYYRRFV+ + K+  PLT L +KN   +W +    +F+ LK  + T  +L +
Subjt:  SVEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTTTTCAGTGGAAGGCATTTGTGCTGATCCTCAGAAAACTGAAGCAGAAGACAAGTGGGAAAGACCTACCTCCGTCACTAAGATCCGAAGTTTTCTTGGT
TTAGCGGGGTATTATCGCCGATTTGTGGAAGGGTTTTCTAAATTGGCACTTCCATTAACCAACCTAACCAGGAAAAATGTAAAGTTTGAATGGATAGATGCTTGT
GAATGGAGTTTTCAAGAGTTAAAGAAAAGGCTTGTAACAGCTTCAATTTTAACAATTCTGACTCCTGGTATAGAATTCGAGATCTATTGTGATGCTTCTCATCAA
GGTTTGGGTTGTGTATTGATGCAAAAAGGAAAGGTAGTGGCTTATGCTTCTAGACAGTTAAAGAAGCATGAATGTAATTACCCTACCCATGACTTAGAACTGGCA
GCATTAGTGCTTGCATTAAAGCTTTGGCGACATTACCTTTATGGTGAGAGATGTCATATATTCACTAATCATAAAAGCTTGAAATACATATTTGATCAGAAGGAA
ATAAATCTAAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGTTTTCAGTGGAAGGCATTTGTGCTGATCCTCAGAAAACTGAAGCAGAAGACAAGTGGGAAAGACCTACCTCCGTCACTAAGATCCGAAGTTTTCTTGGT
TTAGCGGGGTATTATCGCCGATTTGTGGAAGGGTTTTCTAAATTGGCACTTCCATTAACCAACCTAACCAGGAAAAATGTAAAGTTTGAATGGATAGATGCTTGT
GAATGGAGTTTTCAAGAGTTAAAGAAAAGGCTTGTAACAGCTTCAATTTTAACAATTCTGACTCCTGGTATAGAATTCGAGATCTATTGTGATGCTTCTCATCAA
GGTTTGGGTTGTGTATTGATGCAAAAAGGAAAGGTAGTGGCTTATGCTTCTAGACAGTTAAAGAAGCATGAATGTAATTACCCTACCCATGACTTAGAACTGGCA
GCATTAGTGCTTGCATTAAAGCTTTGGCGACATTACCTTTATGGTGAGAGATGTCATATATTCACTAATCATAAAAGCTTGAAATACATATTTGATCAGAAGGAA
ATAAATCTAAGATAG
Protein sequenceShow/hide protein sequence
MWFSVEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASHQ
GLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR