CuGenDBv2

Gene ID	Cmc07g0193281
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Beta-galactosidase
Genome location	CMiso1.1chr07:14696808..14697566
RNA-Seq Expression	Cmc07g0193281
Synteny	Cmc07g0193281
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025289.1 Beta-galactosidase [Cucumis melo var. makuwa]

5.6e-34

46.27

Show/hide

Query:  LSNKVEVSSLSCNACIRAEQHRVTSPSQLYKLSQPFTLIRSDVWGPSSITTSSGKRWFVTFIDDQTYFTWVFLFTEN----MTFQQFQTTIKTRFTAKIA
        L +K++VSSLSC+ CIRA+QHRV+ PSQ YKL+QPFTLI SDVWGPS +TT+SGKRWFVTFIDD T  TWV+L T+       FQ F  TIKT+F  KIA
Subjt:  LSNKVEVSSLSCNACIRAEQHRVTSPSQLYKLSQPFTLIRSDVWGPSSITTSSGKRWFVTFIDDQTYFTWVFLFTEN----MTFQQFQTTIKTRFTAKIA

Query:  FLVVIIVVSSLIILFMIFFLLKALSTKARV-SISLDRIRWLKGTIVNSSR-LTSCCLLRFHHTSGGMQFSLELILLIVCLNVSSNSRPL-----LNPLKS
             I+ S     F    L + L +K  V   S        G     +R L          TS       + IL    L     SR L     L+ LK 
Subjt:  FLVVIIVVSSLIILFMIFFLLKALSTKARV-SISLDRIRWLKGTIVNSSR-LTSCCLLRFHHTSGGMQFSLELILLIVCLNVSSNSRPL-----LNPLKS

Query:  PTLPRGLFSMSLFRFFSALALSIVMTLNQTKFTPHAQRCVFVGYPLYQRGYKCFH
              L S    R F   A       NQTKFTP AQ CVFVGYPL+QRGYKCFH
Subjt:  PTLPRGLFSMSLFRFFSALALSIVMTLNQTKFTPHAQRCVFVGYPLYQRGYKCFH

KAA0032571.1 Beta-galactosidase [Cucumis melo var. makuwa]

3.7e-33

44.71

Show/hide

Query:  LSNKVEVSSLSCNACIRAEQHRVTSPSQLYKLSQPFTLIRSDVWGPSSITTSSGKRWFVTFIDDQTYFTWVFLFTEN----MTFQQFQTTIKTRFTAKIA
        L +K++VSSLSC+ CIRA+QHRV+ PSQ YK +QPFTLI SDVWGPS +TTSSGKRWFVTFIDD T  TWV+L T+       FQ F  TIKT+F  KIA
Subjt:  LSNKVEVSSLSCNACIRAEQHRVTSPSQLYKLSQPFTLIRSDVWGPSSITTSSGKRWFVTFIDDQTYFTWVFLFTEN----MTFQQFQTTIKTRFTAKIA

Query:  FLVVIIVVSSLIILFMIFFLLKALSTKARVSISLDRIRWLKGTIV--NSSRLTSCCLLRFHHTSGGMQFSLELILLIVCLNVSSNSRPL-----LNPLKS
             I+ S     F    L + L++K  V  +       +  +    +  L          TS       + IL    L     SR L     L+ LK 
Subjt:  FLVVIIVVSSLIILFMIFFLLKALSTKARVSISLDRIRWLKGTIV--NSSRLTSCCLLRFHHTSGGMQFSLELILLIVCLNVSSNSRPL-----LNPLKS

Query:  PTLPRGLFSMSLFRFFSALALSIVMTLNQTKFTPHAQRCVFVGYPLYQRGYKCFH
              L S    R F   A       NQTKFTP AQ CVF+GYPL+QRGYKCFH
Subjt:  PTLPRGLFSMSLFRFFSALALSIVMTLNQTKFTPHAQRCVFVGYPLYQRGYKCFH

TYJ99952.1 Beta-galactosidase [Cucumis melo var. makuwa]

1.8e-32

45.49

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Query:  LSNKVEVSSLSCNACIRAEQHRVTSPSQLYKLSQPFTLIRSDVWGPSSITTSSGKRWFVTFIDDQTYFTWVFLFTEN----MTFQQFQTTIKTRFTAKIA
        L +KV+VSSLSC+ CIRA+QHRV+ PSQ YK +QPF LI SDVWGPS +TTSSGKRWFVTFIDD T  TWV+L ++       FQ F  TIKT+F  KIA
Subjt:  LSNKVEVSSLSCNACIRAEQHRVTSPSQLYKLSQPFTLIRSDVWGPSSITTSSGKRWFVTFIDDQTYFTWVFLFTEN----MTFQQFQTTIKTRFTAKIA

Query:  FLVVIIVVSSLIILFMIFFLLKALSTKARV-SISLDRIRWLKGTIVNSSR-LTSCCLLRFHHTSGGMQFSLELILLIVCLNVSSNSRPL-----LNPLKS
             I+ S     F    L + L++K  V   S        G     +R L          TS       + IL    L     SR L     L+ LK 
Subjt:  FLVVIIVVSSLIILFMIFFLLKALSTKARV-SISLDRIRWLKGTIVNSSR-LTSCCLLRFHHTSGGMQFSLELILLIVCLNVSSNSRPL-----LNPLKS

Query:  PTLPRGLFSMSLFRFFSALALSIVMTLNQTKFTPHAQRCVFVGYPLYQRGYKCFH
              L S    R F   A       NQTKFTP AQ CVFVGYPL+Q GYKCFH
Subjt:  PTLPRGLFSMSLFRFFSALALSIVMTLNQTKFTPHAQRCVFVGYPLYQRGYKCFH

TYK07380.1 Beta-galactosidase [Cucumis melo var. makuwa]

7.4e-34

46.27

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Query:  LSNKVEVSSLSCNACIRAEQHRVTSPSQLYKLSQPFTLIRSDVWGPSSITTSSGKRWFVTFIDDQTYFTWVFLFTEN----MTFQQFQTTIKTRFTAKIA
        L +K++VSSLSC+ CIRA+QHRV+ PSQ YKL+QPFTLI SDVWGPS +TT+SGKRWFVTFIDD T  TWV+L T+       FQ F  TIKT+F  KIA
Subjt:  LSNKVEVSSLSCNACIRAEQHRVTSPSQLYKLSQPFTLIRSDVWGPSSITTSSGKRWFVTFIDDQTYFTWVFLFTEN----MTFQQFQTTIKTRFTAKIA

Query:  FLVVIIVVSSLIILFMIFFLLKALSTKARV-SISLDRIRWLKGTIVNSSR-LTSCCLLRFHHTSGGMQFSLELILLIVCLNVSSNSRPL-----LNPLKS
             I+ S     F    L + L +K  V   S        G     +R L          TS       + IL    L     SR L     L+ LK 
Subjt:  FLVVIIVVSSLIILFMIFFLLKALSTKARV-SISLDRIRWLKGTIVNSSR-LTSCCLLRFHHTSGGMQFSLELILLIVCLNVSSNSRPL-----LNPLKS

Query:  PTLPRGLFSMSLFRFFSALALSIVMTLNQTKFTPHAQRCVFVGYPLYQRGYKCFH
              L S    R F   A       NQTKFTP AQ CVFVGYPL+QRGYKCFH
Subjt:  PTLPRGLFSMSLFRFFSALALSIVMTLNQTKFTPHAQRCVFVGYPLYQRGYKCFH

TYK08054.1 Beta-galactosidase [Cucumis melo var. makuwa]

1.8e-32

45.49

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Query:  LSNKVEVSSLSCNACIRAEQHRVTSPSQLYKLSQPFTLIRSDVWGPSSITTSSGKRWFVTFIDDQTYFTWVFLFTEN----MTFQQFQTTIKTRFTAKIA
        L +KV+VSSLSC+ CIRA+QHRV+ PSQ YK +QPF LI SDVWGPS +TTSSGKRWFVTFIDD T  TWV+L ++       FQ F  TIKT+F  KIA
Subjt:  LSNKVEVSSLSCNACIRAEQHRVTSPSQLYKLSQPFTLIRSDVWGPSSITTSSGKRWFVTFIDDQTYFTWVFLFTEN----MTFQQFQTTIKTRFTAKIA

Query:  FLVVIIVVSSLIILFMIFFLLKALSTKARV-SISLDRIRWLKGTIVNSSR-LTSCCLLRFHHTSGGMQFSLELILLIVCLNVSSNSRPL-----LNPLKS
             I+ S     F    L + L++K  V   S        G     +R L          TS       + IL    L     SR L     L+ LK 
Subjt:  FLVVIIVVSSLIILFMIFFLLKALSTKARV-SISLDRIRWLKGTIVNSSR-LTSCCLLRFHHTSGGMQFSLELILLIVCLNVSSNSRPL-----LNPLKS

Query:  PTLPRGLFSMSLFRFFSALALSIVMTLNQTKFTPHAQRCVFVGYPLYQRGYKCFH
              L S    R F   A       NQTKFTP AQ CVFVGYPL+Q GYKCFH
Subjt:  PTLPRGLFSMSLFRFFSALALSIVMTLNQTKFTPHAQRCVFVGYPLYQRGYKCFH

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SJ13 Beta-galactosidase

2.7e-34

46.27

Show/hide

Query:  LSNKVEVSSLSCNACIRAEQHRVTSPSQLYKLSQPFTLIRSDVWGPSSITTSSGKRWFVTFIDDQTYFTWVFLFTEN----MTFQQFQTTIKTRFTAKIA
        L +K++VSSLSC+ CIRA+QHRV+ PSQ YKL+QPFTLI SDVWGPS +TT+SGKRWFVTFIDD T  TWV+L T+       FQ F  TIKT+F  KIA
Subjt:  LSNKVEVSSLSCNACIRAEQHRVTSPSQLYKLSQPFTLIRSDVWGPSSITTSSGKRWFVTFIDDQTYFTWVFLFTEN----MTFQQFQTTIKTRFTAKIA

Query:  FLVVIIVVSSLIILFMIFFLLKALSTKARV-SISLDRIRWLKGTIVNSSR-LTSCCLLRFHHTSGGMQFSLELILLIVCLNVSSNSRPL-----LNPLKS
             I+ S     F    L + L +K  V   S        G     +R L          TS       + IL    L     SR L     L+ LK 
Subjt:  FLVVIIVVSSLIILFMIFFLLKALSTKARV-SISLDRIRWLKGTIVNSSR-LTSCCLLRFHHTSGGMQFSLELILLIVCLNVSSNSRPL-----LNPLKS

Query:  PTLPRGLFSMSLFRFFSALALSIVMTLNQTKFTPHAQRCVFVGYPLYQRGYKCFH
              L S    R F   A       NQTKFTP AQ CVFVGYPL+QRGYKCFH
Subjt:  PTLPRGLFSMSLFRFFSALALSIVMTLNQTKFTPHAQRCVFVGYPLYQRGYKCFH

A0A5A7SSP2 Beta-galactosidase

1.8e-33

44.71

Show/hide

Query:  LSNKVEVSSLSCNACIRAEQHRVTSPSQLYKLSQPFTLIRSDVWGPSSITTSSGKRWFVTFIDDQTYFTWVFLFTEN----MTFQQFQTTIKTRFTAKIA
        L +K++VSSLSC+ CIRA+QHRV+ PSQ YK +QPFTLI SDVWGPS +TTSSGKRWFVTFIDD T  TWV+L T+       FQ F  TIKT+F  KIA
Subjt:  LSNKVEVSSLSCNACIRAEQHRVTSPSQLYKLSQPFTLIRSDVWGPSSITTSSGKRWFVTFIDDQTYFTWVFLFTEN----MTFQQFQTTIKTRFTAKIA

Query:  FLVVIIVVSSLIILFMIFFLLKALSTKARVSISLDRIRWLKGTIV--NSSRLTSCCLLRFHHTSGGMQFSLELILLIVCLNVSSNSRPL-----LNPLKS
             I+ S     F    L + L++K  V  +       +  +    +  L          TS       + IL    L     SR L     L+ LK 
Subjt:  FLVVIIVVSSLIILFMIFFLLKALSTKARVSISLDRIRWLKGTIV--NSSRLTSCCLLRFHHTSGGMQFSLELILLIVCLNVSSNSRPL-----LNPLKS

Query:  PTLPRGLFSMSLFRFFSALALSIVMTLNQTKFTPHAQRCVFVGYPLYQRGYKCFH
              L S    R F   A       NQTKFTP AQ CVF+GYPL+QRGYKCFH
Subjt:  PTLPRGLFSMSLFRFFSALALSIVMTLNQTKFTPHAQRCVFVGYPLYQRGYKCFH

A0A5D3BJK7 Beta-galactosidase

8.8e-33

45.49

Show/hide

Query:  LSNKVEVSSLSCNACIRAEQHRVTSPSQLYKLSQPFTLIRSDVWGPSSITTSSGKRWFVTFIDDQTYFTWVFLFTEN----MTFQQFQTTIKTRFTAKIA
        L +KV+VSSLSC+ CIRA+QHRV+ PSQ YK +QPF LI SDVWGPS +TTSSGKRWFVTFIDD T  TWV+L ++       FQ F  TIKT+F  KIA
Subjt:  LSNKVEVSSLSCNACIRAEQHRVTSPSQLYKLSQPFTLIRSDVWGPSSITTSSGKRWFVTFIDDQTYFTWVFLFTEN----MTFQQFQTTIKTRFTAKIA

Query:  FLVVIIVVSSLIILFMIFFLLKALSTKARV-SISLDRIRWLKGTIVNSSR-LTSCCLLRFHHTSGGMQFSLELILLIVCLNVSSNSRPL-----LNPLKS
             I+ S     F    L + L++K  V   S        G     +R L          TS       + IL    L     SR L     L+ LK 
Subjt:  FLVVIIVVSSLIILFMIFFLLKALSTKARV-SISLDRIRWLKGTIVNSSR-LTSCCLLRFHHTSGGMQFSLELILLIVCLNVSSNSRPL-----LNPLKS

Query:  PTLPRGLFSMSLFRFFSALALSIVMTLNQTKFTPHAQRCVFVGYPLYQRGYKCFH
              L S    R F   A       NQTKFTP AQ CVFVGYPL+Q GYKCFH
Subjt:  PTLPRGLFSMSLFRFFSALALSIVMTLNQTKFTPHAQRCVFVGYPLYQRGYKCFH

A0A5D3C4T4 Beta-galactosidase

8.8e-33

45.49

Show/hide

Query:  LSNKVEVSSLSCNACIRAEQHRVTSPSQLYKLSQPFTLIRSDVWGPSSITTSSGKRWFVTFIDDQTYFTWVFLFTEN----MTFQQFQTTIKTRFTAKIA
        L +KV+VSSLSC+ CIRA+QHRV+ PSQ YK +QPF LI SDVWGPS +TTSSGKRWFVTFIDD T  TWV+L ++       FQ F  TIKT+F  KIA
Subjt:  LSNKVEVSSLSCNACIRAEQHRVTSPSQLYKLSQPFTLIRSDVWGPSSITTSSGKRWFVTFIDDQTYFTWVFLFTEN----MTFQQFQTTIKTRFTAKIA

Query:  FLVVIIVVSSLIILFMIFFLLKALSTKARV-SISLDRIRWLKGTIVNSSR-LTSCCLLRFHHTSGGMQFSLELILLIVCLNVSSNSRPL-----LNPLKS
             I+ S     F    L + L++K  V   S        G     +R L          TS       + IL    L     SR L     L+ LK 
Subjt:  FLVVIIVVSSLIILFMIFFLLKALSTKARV-SISLDRIRWLKGTIVNSSR-LTSCCLLRFHHTSGGMQFSLELILLIVCLNVSSNSRPL-----LNPLKS

Query:  PTLPRGLFSMSLFRFFSALALSIVMTLNQTKFTPHAQRCVFVGYPLYQRGYKCFH
              L S    R F   A       NQTKFTP AQ CVFVGYPL+Q GYKCFH
Subjt:  PTLPRGLFSMSLFRFFSALALSIVMTLNQTKFTPHAQRCVFVGYPLYQRGYKCFH

A0A5D3C7S0 Beta-galactosidase

3.6e-34

46.27

Show/hide

Query:  LSNKVEVSSLSCNACIRAEQHRVTSPSQLYKLSQPFTLIRSDVWGPSSITTSSGKRWFVTFIDDQTYFTWVFLFTEN----MTFQQFQTTIKTRFTAKIA
        L +K++VSSLSC+ CIRA+QHRV+ PSQ YKL+QPFTLI SDVWGPS +TT+SGKRWFVTFIDD T  TWV+L T+       FQ F  TIKT+F  KIA
Subjt:  LSNKVEVSSLSCNACIRAEQHRVTSPSQLYKLSQPFTLIRSDVWGPSSITTSSGKRWFVTFIDDQTYFTWVFLFTEN----MTFQQFQTTIKTRFTAKIA

Query:  FLVVIIVVSSLIILFMIFFLLKALSTKARV-SISLDRIRWLKGTIVNSSR-LTSCCLLRFHHTSGGMQFSLELILLIVCLNVSSNSRPL-----LNPLKS
             I+ S     F    L + L +K  V   S        G     +R L          TS       + IL    L     SR L     L+ LK 
Subjt:  FLVVIIVVSSLIILFMIFFLLKALSTKARV-SISLDRIRWLKGTIVNSSR-LTSCCLLRFHHTSGGMQFSLELILLIVCLNVSSNSRPL-----LNPLKS

Query:  PTLPRGLFSMSLFRFFSALALSIVMTLNQTKFTPHAQRCVFVGYPLYQRGYKCFH
              L S    R F   A       NQTKFTP AQ CVFVGYPL+QRGYKCFH
Subjt:  PTLPRGLFSMSLFRFFSALALSIVMTLNQTKFTPHAQRCVFVGYPLYQRGYKCFH

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.8e-06

37.84

Show/hide

Query:  CNACIRAEQHRVTSPSQLYKLSQPFTLIRSDVWGPSSITTSSGKRWFVTFIDDQTYFTWVFLF-TENMTFQQFQ
        C+ C+  +QHRV+  +   +      L+ SDV GP  I +  G ++FVTFIDD +   WV++  T++  FQ FQ
Subjt:  CNACIRAEQHRVTSPSQLYKLSQPFTLIRSDVWGPSSITTSSGKRWFVTFIDDQTYFTWVFLF-TENMTFQQFQ

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAAAATTTTTCGTTTATCTAATAAAGTTGAGGTCTCTTCTCTGTCTTGTAATGCGTGCATTCGTGCAGAACAGCATAGGGTCACCTCTCCATCTCAACTTTATAAATT
GTCTCAACCTTTCACCCTTATTCGTAGTGATGTTTGGGGTCCCTCGAGTATTACCACCTCTTCAGGGAAACGTTGGTTTGTGACTTTTATTGATGATCAGACCTATTTCA
CATGGGTTTTTCTCTTCACTGAAAATATGACGTTTCAACAATTTCAAACTACCATTAAGACTCGGTTTACAGCCAAAATTGCTTTTTTAGTAGTGATAATAGTTGTGAGT
TCCTTGATAATACTCTTCATGATTTTCTTTCTTCTAAAGGCATTGTCTACCAAAGCTCGTGTGTCTATATCCCTCGACAGAATAAGGTGGCTGAAAGGAACAATTGTTAA
CTCCTCGAGGTTAACCTCATGTTGTCTACTTCGCTTCCATCATACTTCTGGAGGGATGCAGTTCTCACTAGAACTCATCTTATTAATTGTATGTCTTAACGTGTCTTCCA
ACTCCAGACCCCTTTTGAATCCCTTAAAGAGTCCTACCCTACCACGTGGCTTATTCTCAATGTCCCTCTTTAGGTTTTTCAGTGCACTGGCTTTGTCCATAGTCATGACC
CTTAACCAAACTAAGTTTACTCCTCATGCTCAAAGATGTGTCTTTGTTGGGTATCCCCTTTACCAACGAGGTTATAAATGCTTCCATCTTTCTTCTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKIFRLSNKVEVSSLSCNACIRAEQHRVTSPSQLYKLSQPFTLIRSDVWGPSSITTSSGKRWFVTFIDDQTYFTWVFLFTENMTFQQFQTTIKTRFTAKIAFLVVIIVVS
SLIILFMIFFLLKALSTKARVSISLDRIRWLKGTIVNSSRLTSCCLLRFHHTSGGMQFSLELILLIVCLNVSSNSRPLLNPLKSPTLPRGLFSMSLFRFFSALALSIVMT
LNQTKFTPHAQRCVFVGYPLYQRGYKCFHLSS

Cmc07g0193281 (gene) of Melon (Charmono) v1.1 genome