; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc07g0193661 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc07g0193661
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
Genome locationCMiso1.1chr07:15485760..15486485
RNA-Seq ExpressionCmc07g0193661
SyntenyCmc07g0193661
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR025724 - GAG-pre-integrase domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]5.6e-12493.78Show/hide
Query:  MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKT
        MTLKVG  D ISARAVGDAKLFFGNKFMFL+NLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFI KNGVHICSAKLENNLYVLRPNEAKAVLNHEMF+T
Subjt:  MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKT

Query:  ANTQNKRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFF
        ANTQNKRQRISPNN TYLWHLRLGHINLDRIGRLVKNGLLN+L+D SLPPCESCLEGKMTKRPFTGKGY AKEPLELIH DLCGPMNVKARGGFEYFI F
Subjt:  ANTQNKRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFF

Query:  IDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKIL
        IDDYSRYGY YLMEHKSEALEKFKEYK EVENLLSKKIKIL
Subjt:  IDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKIL

KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]3.1e-12292.92Show/hide
Query:  MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKT
        MTLKVG  D ISARAVGDAKLFFGNKFMFL+NLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFI KNGVHICSAKLENNLYVLRPNEAKAVLNHEMF+T
Subjt:  MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKT

Query:  ANTQNKRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFF
        ANTQNKRQRISPNN TYLWHLRLGHINLDRIGRLVK+GLLN+L+D SLPPCESCLEGKMTKRPFTGKGY AKEPLELIH DLCGPMNVKARG FEYFI F
Subjt:  ANTQNKRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFF

Query:  IDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKI
        IDDYSRYGY YLMEHKSEALEKFKEYK EVENLLSKKIKI
Subjt:  IDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKI

KAA0046415.1 gag/pol protein [Cucumis melo var. makuwa]3.9e-9372.8Show/hide
Query:  MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKT
        MT++VG    ISA AVG  +L     F+ L+N+Y+VP +KRNL+SV CL+E  YS+ F++N+ FI KNGV ICSAKLENNLYVLR   +KA+LN EMFKT
Subjt:  MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKT

Query:  ANTQNKRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFF
        A TQNKR +ISP    +LWHLRLGHINL+RI RLVKNGLL+ELE++SLP CESCLEGKMTKRPFTGKG+ AKEPLEL+H DLCGPMNVKARGGFEYFI F
Subjt:  ANTQNKRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFF

Query:  IDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIK
         DDYSRYGY YLM+HKSEALEKFKEYKAEVEN LSK IK
Subjt:  IDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIK

KAA0060534.1 gag/pol protein [Cucumis melo var. makuwa]4.9e-12090.87Show/hide
Query:  MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKT
        M LKVG  D ISARAVGDAKLFFGNKFMFL+NLYIVPKIKRNLVSVSCLIEHMYSI+FSMNEAFISKNGVHICS KLE+NLYVL+PNE KAVLNHEMF+T
Subjt:  MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKT

Query:  ANTQNKRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFF
        ANTQNKRQRIS NN TYLWHLRLGHINLDRIGRLVKNGLLN+LEDDSLPPCESCLEGKMTKRPFTGKGY AKEPLELIH DLCGPMNVKA GGFEYFI F
Subjt:  ANTQNKRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFF

Query:  IDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKIL
        IDDYS YGY YL+EHKSEALEKFKEYK EVENLLSKKIKIL
Subjt:  IDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKIL

KAA0067938.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-11489.21Show/hide
Query:  MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKT
        MTL VG  D ISARAVGD KLFFG KFMFL+NLYIVPKIKRNLV VSCLIEHMYSINFSMNEAFISKNG     AKLE+NLYVLRPNEAKAVLNHEMF+T
Subjt:  MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKT

Query:  ANTQNKRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFF
        ANTQNKRQRISPNN TYLWHLRL HINLDRIGRLVKNGLLN+L+DDSLPPCESCLEGKMTKRPFTGK Y AKEPLELIH DLCGPMNVKARGGFEYFI F
Subjt:  ANTQNKRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFF

Query:  IDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKIL
        IDDYSRYGY YLMEHK EALEKFKEYK EVENLLSKKIKIL
Subjt:  IDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKIL

TrEMBL top hitse value%identityAlignment
A0A5A7T2V9 Gag/pol protein1.5e-12292.92Show/hide
Query:  MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKT
        MTLKVG  D ISARAVGDAKLFFGNKFMFL+NLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFI KNGVHICSAKLENNLYVLRPNEAKAVLNHEMF+T
Subjt:  MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKT

Query:  ANTQNKRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFF
        ANTQNKRQRISPNN TYLWHLRLGHINLDRIGRLVK+GLLN+L+D SLPPCESCLEGKMTKRPFTGKGY AKEPLELIH DLCGPMNVKARG FEYFI F
Subjt:  ANTQNKRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFF

Query:  IDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKI
        IDDYSRYGY YLMEHKSEALEKFKEYK EVENLLSKKIKI
Subjt:  IDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKI

A0A5A7TYF5 Gag/pol protein1.9e-9372.8Show/hide
Query:  MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKT
        MT++VG    ISA AVG  +L     F+ L+N+Y+VP +KRNL+SV CL+E  YS+ F++N+ FI KNGV ICSAKLENNLYVLR   +KA+LN EMFKT
Subjt:  MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKT

Query:  ANTQNKRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFF
        A TQNKR +ISP    +LWHLRLGHINL+RI RLVKNGLL+ELE++SLP CESCLEGKMTKRPFTGKG+ AKEPLEL+H DLCGPMNVKARGGFEYFI F
Subjt:  ANTQNKRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFF

Query:  IDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIK
         DDYSRYGY YLM+HKSEALEKFKEYKAEVEN LSK IK
Subjt:  IDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIK

A0A5A7TZD0 Gag/pol protein2.7e-12493.78Show/hide
Query:  MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKT
        MTLKVG  D ISARAVGDAKLFFGNKFMFL+NLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFI KNGVHICSAKLENNLYVLRPNEAKAVLNHEMF+T
Subjt:  MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKT

Query:  ANTQNKRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFF
        ANTQNKRQRISPNN TYLWHLRLGHINLDRIGRLVKNGLLN+L+D SLPPCESCLEGKMTKRPFTGKGY AKEPLELIH DLCGPMNVKARGGFEYFI F
Subjt:  ANTQNKRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFF

Query:  IDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKIL
        IDDYSRYGY YLMEHKSEALEKFKEYK EVENLLSKKIKIL
Subjt:  IDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKIL

A0A5A7VJG3 Gag/pol protein5.1e-11589.21Show/hide
Query:  MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKT
        MTL VG  D ISARAVGD KLFFG KFMFL+NLYIVPKIKRNLV VSCLIEHMYSINFSMNEAFISKNG     AKLE+NLYVLRPNEAKAVLNHEMF+T
Subjt:  MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKT

Query:  ANTQNKRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFF
        ANTQNKRQRISPNN TYLWHLRL HINLDRIGRLVKNGLLN+L+DDSLPPCESCLEGKMTKRPFTGK Y AKEPLELIH DLCGPMNVKARGGFEYFI F
Subjt:  ANTQNKRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFF

Query:  IDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKIL
        IDDYSRYGY YLMEHK EALEKFKEYK EVENLLSKKIKIL
Subjt:  IDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKIL

A0A5D3BNE1 Gag/pol protein2.4e-12090.87Show/hide
Query:  MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKT
        M LKVG  D ISARAVGDAKLFFGNKFMFL+NLYIVPKIKRNLVSVSCLIEHMYSI+FSMNEAFISKNGVHICS KLE+NLYVL+PNE KAVLNHEMF+T
Subjt:  MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKT

Query:  ANTQNKRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFF
        ANTQNKRQRIS NN TYLWHLRLGHINLDRIGRLVKNGLLN+LEDDSLPPCESCLEGKMTKRPFTGKGY AKEPLELIH DLCGPMNVKA GGFEYFI F
Subjt:  ANTQNKRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFF

Query:  IDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKIL
        IDDYS YGY YL+EHKSEALEKFKEYK EVENLLSKKIKIL
Subjt:  IDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKIL

SwissProt top hitse value%identityAlignment
P04146 Copia protein1.5e-1530.32Show/hide
Query:  LKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHIC-SAKLENNLYVLRPNEAKAVLNHEMFKTANTQNKRQRISPNNITYLWHLRLGHIN-
        L+++    +   NL+SV  L E   SI F  +   ISKNG+ +  ++ + NN+          V+N + + + N ++K      NN   LWH R GHI+ 
Subjt:  LKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHIC-SAKLENNLYVLRPNEAKAVLNHEMFKTANTQNKRQRISPNNITYLWHLRLGHIN-

Query:  -----LDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPF--TGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFFIDDYSRYGYSYLMEHKSEAL
             + R        LLN LE  S   CE CL GK  + PF         K PL ++H D+CGP+         YF+ F+D ++ Y  +YL+++KS+  
Subjt:  -----LDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPF--TGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFFIDDYSRYGYSYLMEHKSEAL

Query:  EKFKEYKAEVENLLSKKIKIL
          F+++ A+ E   + K+  L
Subjt:  EKFKEYKAEVENLLSKKIKIL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.9e-1926.97Show/hide
Query:  TLKVGMRDFISARAVGDAKLFFG-NKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKT
        T+K+G   +     +GD  +       + LK++  VP ++ NL+S   L    Y   F+  +  ++K  + I        LY       +  LN      
Subjt:  TLKVGMRDFISARAVGDAKLFFG-NKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKT

Query:  ANTQNKRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFF
              +  IS +    LWH R+GH++   +  L K  L++  +  ++ PC+ CL GK  +  F          L+L++ D+CGPM +++ GG +YF+ F
Subjt:  ANTQNKRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFF

Query:  IDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKIL
        IDD SR  + Y+++ K +  + F+++ A VE    +K+K L
Subjt:  IDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKIL

P25384 Transposon Ty2-C Gag-Pol polyprotein5.8e-0724.9Show/hide
Query:  ISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKTANTQNKRQRI
        I   A+G+    F N           P I  +L+S+S L     +  F+ N      +G  +       + Y L  ++   + +H    T N  NK +  
Subjt:  ISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKTANTQNKRQRI

Query:  SPNNITY-LWHLRLGHINLDRIGRLVKNGLLNELEDDSLP-------PCESCLEGKMTK-RPFTG---KGYSAKEPLELIHLDLCGPMNVKARGGFEYFI
        S N   Y L H  LGH N   I + +K   +  L++  +         C  CL GK TK R   G   K   + EP + +H D+ GP++   +    YFI
Subjt:  SPNNITY-LWHLRLGHINLDRIGRLVKNGLLNELEDDSLP-------PCESCLEGKMTK-RPFTG---KGYSAKEPLELIHLDLCGPMNVKARGGFEYFI

Query:  FFIDDYSRYGYSYLMEHKSE--ALEKFKEYKAEVENLLSKKIKIL
         F D+ +R+ + Y +  + E   L  F    A ++N  + ++ ++
Subjt:  FFIDDYSRYGYSYLMEHKSE--ALEKFKEYKAEVENLLSKKIKIL

Q07791 Transposon Ty2-DR3 Gag-Pol polyprotein4.5e-0724.9Show/hide
Query:  ISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKTANTQNKRQRI
        I   A+G+    F N           P I  +L+S+S L     +  F+ N      +G  +       + Y L  ++   + +H    T N  NK +  
Subjt:  ISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKTANTQNKRQRI

Query:  SPNNITY-LWHLRLGHINLDRIGRLVKNGLLNELEDDSLP-------PCESCLEGKMTK-RPFTG---KGYSAKEPLELIHLDLCGPMNVKARGGFEYFI
        S N   Y L H  LGH N   I + +K   +  L++  +         C  CL GK TK R   G   K   + EP + +H D+ GP++   +    YFI
Subjt:  SPNNITY-LWHLRLGHINLDRIGRLVKNGLLNELEDDSLP-------PCESCLEGKMTK-RPFTG---KGYSAKEPLELIHLDLCGPMNVKARGGFEYFI

Query:  FFIDDYSRYGYSYLMEHKSE--ALEKFKEYKAEVENLLSKKIKIL
         F D+ +R+ + Y +  + E   L  F    A ++N  + ++ ++
Subjt:  FFIDDYSRYGYSYLMEHKSE--ALEKFKEYKAEVENLLSKKIKIL

Q12491 Transposon Ty2-B Gag-Pol polyprotein5.8e-0724.9Show/hide
Query:  ISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKTANTQNKRQRI
        I   A+G+    F N           P I  +L+S+S L     +  F+ N      +G  +       + Y L  ++   + +H    T N  NK +  
Subjt:  ISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKTANTQNKRQRI

Query:  SPNNITY-LWHLRLGHINLDRIGRLVKNGLLNELEDDSLP-------PCESCLEGKMTK-RPFTG---KGYSAKEPLELIHLDLCGPMNVKARGGFEYFI
        S N   Y L H  LGH N   I + +K   +  L++  +         C  CL GK TK R   G   K   + EP + +H D+ GP++   +    YFI
Subjt:  SPNNITY-LWHLRLGHINLDRIGRLVKNGLLNELEDDSLP-------PCESCLEGKMTK-RPFTG---KGYSAKEPLELIHLDLCGPMNVKARGGFEYFI

Query:  FFIDDYSRYGYSYLMEHKSE--ALEKFKEYKAEVENLLSKKIKIL
         F D+ +R+ + Y +  + E   L  F    A ++N  + ++ ++
Subjt:  FFIDDYSRYGYSYLMEHKSE--ALEKFKEYKAEVENLLSKKIKIL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACTCAAGGTTGGAATGAGAGATTTCATTTCAGCTCGTGCAGTGGGAGATGCTAAGTTGTTTTTCGGAAATAAATTCATGTTTTTGAAAAACTTGTACATA
GTTCCTAAAATTAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTTCATTTCTAAGAATGGTGTA
CATATTTGTTCGGCTAAGCTTGAAAACAACTTGTATGTATTAAGACCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTTAAAACTGCTAATACTCAAAAT
AAAAGGCAAAGAATTTCTCCGAATAACATTACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTCGATCGGATCGGGAGATTGGTAAAGAATGGACTTCTA
AACGAGTTAGAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGAAAAATGACAAAGAGACCTTTTACTGGAAAAGGTTATAGTGCCAAAGAGCCTTTA
GAACTTATACATTTAGACCTCTGTGGTCCAATGAATGTAAAAGCTAGAGGGGGTTTTGAATACTTCATCTTTTTTATAGATGACTATTCTAGGTATGGTTATTCA
TACTTAATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGGCTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACACTCAAGGTTGGAATGAGAGATTTCATTTCAGCTCGTGCAGTGGGAGATGCTAAGTTGTTTTTCGGAAATAAATTCATGTTTTTGAAAAACTTGTACATA
GTTCCTAAAATTAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTTCATTTCTAAGAATGGTGTA
CATATTTGTTCGGCTAAGCTTGAAAACAACTTGTATGTATTAAGACCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTTAAAACTGCTAATACTCAAAAT
AAAAGGCAAAGAATTTCTCCGAATAACATTACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTCGATCGGATCGGGAGATTGGTAAAGAATGGACTTCTA
AACGAGTTAGAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGAAAAATGACAAAGAGACCTTTTACTGGAAAAGGTTATAGTGCCAAAGAGCCTTTA
GAACTTATACATTTAGACCTCTGTGGTCCAATGAATGTAAAAGCTAGAGGGGGTTTTGAATACTTCATCTTTTTTATAGATGACTATTCTAGGTATGGTTATTCA
TACTTAATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGGCTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTTGA
Protein sequenceShow/hide protein sequence
MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKTANTQN
KRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFFIDDYSRYGYS
YLMEHKSEALEKFKEYKAEVENLLSKKIKIL