CuGenDBv2

Gene ID	Cmc07g0196041
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	40S ribosomal protein S13
Genome location	CMiso1.1chr07:19454340..19454522
RNA-Seq Expression	Cmc07g0196041
Synteny	Cmc07g0196041
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0006744 - ubiquinone biosynthetic process (biological process) GO:0005730 - nucleolus (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0031314 - extrinsic component of mitochondrial inner membrane (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000589 - Ribosomal protein S15 IPR009068 - S15/NS1, RNA-binding IPR023029 - Ribosomal protein S15P

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ABW90418.1 putative ribosomal protein S13 [Barentsia elongata]

4.6e-19

92.86

Show/hide

Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY
        +L +KGLAPEIPEDLYHLIKKAVSIRKHLERNRKDK+SKFRLILVESRIHRLARYY
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY

ELU17309.1 hypothetical protein CAPTEDRAFT_149191 [Capitella teleta]

1.0e-18

91.07

Show/hide

Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY
        +L SKGLAPEIPEDLYHLIKKAVS+RKHLERNRKDK++KFRLILVESRIHRLARYY
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY

KHJ41186.1 ribosomal protein S15 [Trichuris suis]

1.0e-18

91.07

Show/hide

Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY
        +L SKGLAPEIPEDLYHLIKKAV+IRKHLERNRKDK+SKFRLILVE+RIHRLARYY
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY

VDD62413.1 unnamed protein product [Brassica oleracea]

1.0e-18

89.66

Show/hide

Query:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY
        V LL  +GLAPEIPEDLYHLIKKAV+IRKHLERNRKDK+SKFRLILVESRIHRLARYY
Subjt:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY

VDD87991.1 unnamed protein product [Enterobius vermicularis]

6.0e-19

89.66

Show/hide

Query:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY
        V +L SKG+APEIPEDLYHLIKKAVSIRKHLERNRKDK+SK+RLILVESRIHRLARYY
Subjt:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY

TrEMBL top hits

e value

%identity

Alignment

A0A0N4V0I2 40S ribosomal protein S13

2.9e-19

89.66

Show/hide

Query:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY
        V +L SKG+APEIPEDLYHLIKKAVSIRKHLERNRKDK+SK+RLILVESRIHRLARYY
Subjt:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY

A0A0N5AK96 40S ribosomal protein S13

2.9e-19

89.66

Show/hide

Query:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY
        V +L SKG+APEIPEDLYHLIKKAVSIRKHLERNRKDK+SK+RLILVESRIHRLARYY
Subjt:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY

A0A5S6QVF7 40S ribosomal protein S13

5.0e-19

91.07

Show/hide

Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY
        +L SKGLAPEIPEDLYHLIKKAV+IRKHLERNRKDK+SKFRLILVE+RIHRLARYY
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY

A8UAD8 40S ribosomal protein S13

2.2e-19

92.86

Show/hide

Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY
        +L +KGLAPEIPEDLYHLIKKAVSIRKHLERNRKDK+SKFRLILVESRIHRLARYY
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY

R7VFB9 40S ribosomal protein S13

5.0e-19

91.07

Show/hide

Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY
        +L SKGLAPEIPEDLYHLIKKAVS+RKHLERNRKDK++KFRLILVESRIHRLARYY
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY

SwissProt top hits

e value

%identity

Alignment

P59223 40S ribosomal protein S13-1

6.7e-21

89.29

Show/hide

Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY
        +L + GLAPEIPEDLYHLIKKAV+IRKHLERNRKDK+SKFRLILVESRIHRLARYY
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY

P59224 40S ribosomal protein S13-2

6.7e-21

89.29

Show/hide

Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY
        +L + GLAPEIPEDLYHLIKKAV+IRKHLERNRKDK+SKFRLILVESRIHRLARYY
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY

P62299 40S ribosomal protein S13

3.9e-21

86.21

Show/hide

Query:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY
        V +L +KG+APEIPEDLYHLIKKAV+IRKHLERNRKDK+SK+RLILVESRIHRLARYY
Subjt:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY

P62300 40S ribosomal protein S13

3.9e-21

86.21

Show/hide

Query:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY
        V +L +KG+APEIPEDLYHLIKKAV+IRKHLERNRKDK+SK+RLILVESRIHRLARYY
Subjt:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY

P62302 40S ribosomal protein S13

3.0e-21

91.07

Show/hide

Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY
        +L + GLAPEIPEDLYHLIKKAVSIRKHLERNRKDK+SKFRLILVESRIHRLARYY
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY

Arabidopsis top hits

e value

%identity

Alignment

AT3G60770.1 Ribosomal protein S13/S15

4.8e-22

89.29

Show/hide

Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY
        +L + GLAPEIPEDLYHLIKKAV+IRKHLERNRKDK+SKFRLILVESRIHRLARYY
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY

AT4G00100.1 ribosomal protein S13A

4.8e-22

89.29

Show/hide

Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY
        +L + GLAPEIPEDLYHLIKKAV+IRKHLERNRKDK+SKFRLILVESRIHRLARYY
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGAACAG
GAAGGACAAAAACTCCAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTAGCTCGCTACTACTAG

mRNA sequence

Show/hide mRNA sequence

ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGAACAG
GAAGGACAAAAACTCCAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTAGCTCGCTACTACTAG

Protein sequence

Show/hide protein sequence

MCVFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKNSKFRLILVESRIHRLARYY

Cmc07g0196041 (gene) of Melon (Charmono) v1.1 genome