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Cmc07g0196171 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc07g0196171
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr07:19567561..19567905
RNA-Seq ExpressionCmc07g0196171
SyntenyCmc07g0196171
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033187.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-4383.04Show/hide
Query:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW
        MSFGLTNAPAVFMDL+NRVFKDFLDTFVIVFIDDIL+Y K E EYEEHLH+VLETLRANKLYAKFSK EFWLKKV+F+GHVVSSEGV VDPAKIEA+TSW
Subjt:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW

Query:  PQPLQLMKFVVF
        P+P  + K   F
Subjt:  PQPLQLMKFVVF
KAA0037221.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]1.9e-4282.14Show/hide
Query:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW
        +SFG TNAPAVFMDL+N VFKDFLDTFVIVFIDDILVY K E E+EEHLHQVLETLRANKLYAKFSK +FWLKKVSF+GHVVSSEGV VDPAKIEA TSW
Subjt:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW

Query:  PQPLQLMKFVVF
        P+P  ++KF  F
Subjt:  PQPLQLMKFVVF
KAA0045284.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.6e-4479.82Show/hide
Query:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW
        MSFGLTNAPAVFMDL+N VFKDFLD+F+IVFIDDIL+Y K E E+EEHLHQVLETLR+NKLYAKFSK EFWLKKV+F+GHVVSSEGV VDPAKIEA+T+W
Subjt:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW

Query:  PQPLQLMKFVVFWI
        P+ L+L +FVV W+
Subjt:  PQPLQLMKFVVFWI
TYK07489.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-4383.04Show/hide
Query:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW
        MSFGLTNAPAVFMDL+NRVFKDFLDTFVIVFIDDIL+Y K E EYEEHLH+VLETLRANKLYAKFSK EFWLKKV+F+GHVVSSEGV VDPAKIEA+TSW
Subjt:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW

Query:  PQPLQLMKFVVF
        P+P  + K   F
Subjt:  PQPLQLMKFVVF
TYK28967.1 pol protein [Cucumis melo var. makuwa]1.9e-4286.41Show/hide
Query:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW
        MSFGLTNAPAVFMDL+NRVFKDFLD+F+IVFIDDIL+Y K EVE+EEHLHQVLETLRANKLYAKFSK EFWLKKV F+GHVVSSEGV VDPAKIEA+T+W
Subjt:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW

Query:  PQP
        P+P
Subjt:  PQP
TrEMBL top hitse value%identityAlignment
A0A5A7SV35 Ty3-gypsy retrotransposon protein8.5e-4483.04Show/hide
Query:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW
        MSFGLTNAPAVFMDL+NRVFKDFLDTFVIVFIDDIL+Y K E EYEEHLH+VLETLRANKLYAKFSK EFWLKKV+F+GHVVSSEGV VDPAKIEA+TSW
Subjt:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW

Query:  PQPLQLMKFVVF
        P+P  + K   F
Subjt:  PQPLQLMKFVVF
A0A5A7TQ85 Reverse transcriptase2.2e-4479.82Show/hide
Query:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW
        MSFGLTNAPAVFMDL+N VFKDFLD+F+IVFIDDIL+Y K E E+EEHLHQVLETLR+NKLYAKFSK EFWLKKV+F+GHVVSSEGV VDPAKIEA+T+W
Subjt:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW

Query:  PQPLQLMKFVVFWI
        P+ L+L +FVV W+
Subjt:  PQPLQLMKFVVFWI
A0A5D3CAY7 Ty3-gypsy retrotransposon protein8.5e-4483.04Show/hide
Query:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW
        MSFGLTNAPAVFMDL+NRVFKDFLDTFVIVFIDDIL+Y K E EYEEHLH+VLETLRANKLYAKFSK EFWLKKV+F+GHVVSSEGV VDPAKIEA+TSW
Subjt:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW

Query:  PQPLQLMKFVVF
        P+P  + K   F
Subjt:  PQPLQLMKFVVF
A0A5D3CUF9 Retrotransposon protein, putative, Ty3-gypsy subclass9.4e-4382.14Show/hide
Query:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW
        +SFG TNAPAVFMDL+N VFKDFLDTFVIVFIDDILVY K E E+EEHLHQVLETLRANKLYAKFSK +FWLKKVSF+GHVVSSEGV VDPAKIEA TSW
Subjt:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW

Query:  PQPLQLMKFVVF
        P+P  ++KF  F
Subjt:  PQPLQLMKFVVF
A0A5D3DYK2 Pol protein9.4e-4386.41Show/hide
Query:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW
        MSFGLTNAPAVFMDL+NRVFKDFLD+F+IVFIDDIL+Y K EVE+EEHLHQVLETLRANKLYAKFSK EFWLKKV F+GHVVSSEGV VDPAKIEA+T+W
Subjt:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW

Query:  PQP
        P+P
Subjt:  PQP
SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.1e-1134.82Show/hide
Query:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW
        M FGL NAPA F   +N + +  L+   +V++DDI+V+     E+ + L  V E L    L  +  K EF  ++ +F+GHV++ +G+  +P KIEAI  +
Subjt:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW

Query:  PQPLQLMKFVVF
        P P +  +   F
Subjt:  PQPLQLMKFVVF
P0CT34 Transposon Tf2-1 polyprotein1.0e-0933.01Show/hide
Query:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW
        M +G++ APA F   IN +  +  ++ V+ ++DDIL++ K E E+ +H+  VL+ L+   L    +K EF   +V FIG+ +S +G       I+ +  W
Subjt:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW

Query:  PQP
         QP
Subjt:  PQP
P0CT41 Transposon Tf2-12 polyprotein1.0e-0933.01Show/hide
Query:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW
        M +G++ APA F   IN +  +  ++ V+ ++DDIL++ K E E+ +H+  VL+ L+   L    +K EF   +V FIG+ +S +G       I+ +  W
Subjt:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW

Query:  PQP
         QP
Subjt:  PQP
P20825 Retrovirus-related Pol polyprotein from transposon 2972.4e-1133.98Show/hide
Query:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW
        M FGL NAPA F   +N + +  L+   +V++DDI+++     E+   +  V   L    L  +  K EF  K+ +F+GH+V+ +G+  +P K++AI S+
Subjt:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW

Query:  PQP
        P P
Subjt:  PQP
Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus2.7e-1031.25Show/hide
Query:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW
        + FGL NAPA+F  +I+ + ++ +     V+IDDI+V+ +    + ++L  VL +L    L     K  F   +V F+G++V+++G+  DP K+ AI+  
Subjt:  MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSW

Query:  PQPLQLMKFVVF
        P P  + +   F
Subjt:  PQPLQLMKFVVF
Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein2.8e-0739.66Show/hide
Query:  HLHQVLETLRANKLYAKFSKFEFWLKKVSFIG--HVVSSEGVFVDPAKIEAITSWPQP
        HL  VL+    ++ YA   K  F   +++++G  H++S EGV  DPAK+EA+  WP+P
Subjt:  HLHQVLETLRANKLYAKFSKFEFWLKKVSFIG--HVVSSEGVFVDPAKIEAITSWPQP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTTTGGCTTGACCAATGCTCCTGCTGTATTTATGGATCTAATAAACAGGGTGTTTAAGGATTTCTTAGACACTTTTGTTATAGTTTTTATTGATGACATC
TTGGTTTACTTCAAGATAGAGGTTGAGTATGAGGAGCATTTGCATCAGGTTTTGGAGACTCTTCGAGCCAATAAGCTATATGCTAAGTTTTCTAAGTTTGAGTTC
TGGCTGAAGAAGGTGTCTTTTATTGGCCATGTAGTATCTAGTGAGGGAGTCTTTGTAGACCCAGCGAAGATTGAAGCCATTACTAGTTGGCCTCAACCTTTACAG
TTAATGAAGTTCGTAGTTTTTTGGATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCTTTGGCTTGACCAATGCTCCTGCTGTATTTATGGATCTAATAAACAGGGTGTTTAAGGATTTCTTAGACACTTTTGTTATAGTTTTTATTGATGACATC
TTGGTTTACTTCAAGATAGAGGTTGAGTATGAGGAGCATTTGCATCAGGTTTTGGAGACTCTTCGAGCCAATAAGCTATATGCTAAGTTTTCTAAGTTTGAGTTC
TGGCTGAAGAAGGTGTCTTTTATTGGCCATGTAGTATCTAGTGAGGGAGTCTTTGTAGACCCAGCGAAGATTGAAGCCATTACTAGTTGGCCTCAACCTTTACAG
TTAATGAAGTTCGTAGTTTTTTGGATTTAG
Protein sequenceShow/hide protein sequence
MSFGLTNAPAVFMDLINRVFKDFLDTFVIVFIDDILVYFKIEVEYEEHLHQVLETLRANKLYAKFSKFEFWLKKVSFIGHVVSSEGVFVDPAKIEAITSWPQPLQ
LMKFVVFWI