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Cmc07g0196261 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc07g0196261
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr07:19641970..19644594
RNA-Seq ExpressionCmc07g0196261
SyntenyCmc07g0196261
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAD25646.1 putative retroelement pol polyprotein [Arabidopsis thaliana]1.7e-0941.89Show/hide
Query:  MGHPSISRIKELSKIEIADSLNCKEIS--HICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSY
        +GHPS SR+  LS++        K+ +  H+CHLAKQ+ LSFP+ NN+  + F+L++ D+WGP   +T  G+ Y
Subjt:  MGHPSISRIKELSKIEIADSLNCKEIS--HICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSY

CAA0373958.1 unnamed protein product [Arabidopsis thaliana]1.7e-0941.89Show/hide
Query:  MGHPSISRIKELSKIEIADSLNCKEIS--HICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSY
        +GHPS SR+  LS++        K+ +  H+CHLAKQ+ LSFP+ NN+  + F+L++ D+WGP   +T  G+ Y
Subjt:  MGHPSISRIKELSKIEIADSLNCKEIS--HICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSY

CAE5963143.1 unnamed protein product [Arabidopsis arenosa]1.2e-1046.84Show/hide
Query:  MGHPSISRIKELSKIEIADSLNCKEISH--ICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSYLPLLL
        +GHPS S+I+ LS+         K+ SH   CHLAKQR LSFP+LNNV++N FDL++ D+WGP    +  G  Y   L+
Subjt:  MGHPSISRIKELSKIEIADSLNCKEISH--ICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSYLPLLL

DAD40346.1 TPA_asm: hypothetical protein HUJ06_014669 [Nelumbo nucifera]5.0e-0946.58Show/hide
Query:  MGHPSISRIKELSKIEIADSLNCKEISHICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSYL
        MGH S +R+K L +++   SL   +   ICH AKQR LSFP   + + N FDLI+ D WGP  T +  GH YL
Subjt:  MGHPSISRIKELSKIEIADSLNCKEISHICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSYL

KAA0037194.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.2e-0961.4Show/hide
Query:  LNCKEISHICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSYLPLLL
        L CK  +   H  KQ+ LSFPALNNVA NIFDL Y DIWGP KT+THAGH+Y   ++
Subjt:  LNCKEISHICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSYLPLLL

TrEMBL top hitse value%identityAlignment
A0A1J3DC96 Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment)3.2e-0944.59Show/hide
Query:  MGHPSISRIKELSKIEIADSLNCKEIS--HICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSY
        +GHPS+SRI  +SK         K ++  HICHLAKQR LSFP+ NN+     +L++ D+WGP   +T  G+ Y
Subjt:  MGHPSISRIKELSKIEIADSLNCKEIS--HICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSY

A0A1J3HJY9 Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment)7.0e-0944.59Show/hide
Query:  MGHPSISRIKELSKIEIADSLNCKEIS--HICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSY
        +GHPS+SRI  +SK         K ++  HICHLAKQR LSFP  NN+     +L++ D+WGP   +T  G+ Y
Subjt:  MGHPSISRIKELSKIEIADSLNCKEIS--HICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSY

A0A5A7T140 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-0961.4Show/hide
Query:  LNCKEISHICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSYLPLLL
        L CK  +   H  KQ+ LSFPALNNVA NIFDL Y DIWGP KT+THAGH+Y   ++
Subjt:  LNCKEISHICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSYLPLLL

A0A5S9X2Z9 Uncharacterized protein8.3e-1041.89Show/hide
Query:  MGHPSISRIKELSKIEIADSLNCKEIS--HICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSY
        +GHPS SR+  LS++        K+ +  H+CHLAKQ+ LSFP+ NN+  + F+L++ D+WGP   +T  G+ Y
Subjt:  MGHPSISRIKELSKIEIADSLNCKEIS--HICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSY

Q9SIM3 Putative retroelement pol polyprotein8.3e-1041.89Show/hide
Query:  MGHPSISRIKELSKIEIADSLNCKEIS--HICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSY
        +GHPS SR+  LS++        K+ +  H+CHLAKQ+ LSFP+ NN+  + F+L++ D+WGP   +T  G+ Y
Subjt:  MGHPSISRIKELSKIEIADSLNCKEIS--HICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACATCCTTCTATTAGTAGAATAAAGGAATTATCAAAGATAGAAATTGCTGATTCATTAAATTGTAAAGAAATTTCGCATATTTGTCACTTAGCTAAACAA
AGGTGTCTTTCATTCCCTGCTTTGAATAATGTTGCTGAGAATATCTTTGATCTTATATATTGTGACATATGGGGTCCTTCTAAAACCAAAACACATGCAGGACAT
TCTTACTTGCCACTATTGTTAATGTTAAGTCAAGATACACTTGATACATCTTTTGAAAAATAA
mRNA sequenceShow/hide mRNA sequence
GATAAACTTCTTCACACATACCTCTCTCCCTTTGATATGGTATCAGAGCATTTCCACAAAGGAGAATTAGAGCATTACCCAAACGTTACATTACCCTCGTGCAGT
CTCCACCATGACAAGATCTGAGAGTTCGACGTCTGGCAACTCCAACTCCTCAACTCCAATCACCTTTTCTGAACTCAACGCCCAACTAAATCCTTTCATCCTTCA
CCATTAATGGCTGCCAACGTCGGTTGAGGAACACAGGGAACGGATAGCTGATTGGATCCTTGAATGGTCGGTGGAACGCGAAACTCCTATGATAGCTGGCATTTG
GATTACTTGAGGGTGGAGTTCGATCCTCTTATATCAAATGGAGATGGTCAGCAGCGCTTGTAGAGGGTGGAGTTCATGCATCCAATGGTCGGTGGAGTTTGAAGG
AAATGGAGAGGCGTGCATGAGGTTTATCGTGATGGTTTGAGGAAAGCAAAGGCCGACAGCTTTGAACAAAAGGAAAGGGAGACGAAGAGCTGATTCGATTATTCT
GACCACCAACTTGGTTTCTACACCACTTGCAAGATCAAGCAACAACTCTTCATGGAGCAGAGCAATGAAACCTACGCTGTTAGGGAAGAACAAGATTTGATTCTT
AAGGGAGCGATTGAGAAACCATCAAAAGGACAAGTCAGTTTCGAAAATGATGGAGAAAGTTGAACTAATCAGTGGCCTCTACTTGCTCAAAGTTAATGATGAAAA
GATTAAAGACTGCCTTAATGAATCTGCTTTCTTTCTTTTTTTTTTTTTTTTTTGTAAAGCCTATGCAACTACATGGCATAATTGATGGGACATCCTTCTATTAGT
AGAATAAAGGAATTATCAAAGATAGAAATTGCTGATTCATTAAATTGTAAAGAAATTTCGCATATTTGTCACTTAGCTAAACAAAGGTGTCTTTCATTCCCTGCT
TTGAATAATGTTGCTGAGAATATCTTTGATCTTATATATTGTGACATATGGGGTCCTTCTAAAACCAAAACACATGCAGGACATTCTTACTTGCCACTATTGTTA
ATGTTAAGTCAAGATACACTTGATACATCTTTTGAAAAATAA
Protein sequenceShow/hide protein sequence
MGHPSISRIKELSKIEIADSLNCKEISHICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSYLPLLLMLSQDTLDTSFEK