; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc07g0197191 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc07g0197191
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
Genome locationCMiso1.1chr07:20453191..20453937
RNA-Seq ExpressionCmc07g0197191
SyntenyCmc07g0197191
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]8.3e-13193.55Show/hide
Query:  MTKRLFTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYM
        MTKR FTGK YRAKEPLELIHSDL GPMNVKARG FEYFISFIDDYSRYGYLYLME+KSEALEKFKEYK EVENLLSKKIKILRSDRG EYMDLRFQDYM
Subjt:  MTKRLFTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYM

Query:  IEHEIQFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVSETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPKKL
        IEH IQ QLSAPGTPQQNGVSERRNR LLDMVRSMMSYAQLPSSFWGYAVETA+HILNNVPSKSVSET F+LWRGRKPSLSHFRIWGCPAH+LVTNPKKL
Subjt:  IEHEIQFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVSETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPKKL

Query:  EPRSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLEEDHMRDHKP
        EPRSRLCQFVGYPKETRGGL FDPQENRVFVSTNATFLEEDHMR+HKP
Subjt:  EPRSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLEEDHMRDHKP

KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-12992.74Show/hide
Query:  MTKRLFTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYM
        MTKR FTGK YRAKEPLELIHSDL GPMNVKARGSFEYFISFIDDYSRYGYLYLME+KSEALEKFKEYK EVENLLSKKIKI RSDRG EYMDL FQDYM
Subjt:  MTKRLFTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYM

Query:  IEHEIQFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVSETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPKKL
        IEH IQ QLSAPGTPQQNGVSERRNR LLDMVRSMMSYAQLPSSFWGYAVETA+HILNNVPSKSVSET F+LWRGRKPSLSHFRIWGCPAH+LVTNPKKL
Subjt:  IEHEIQFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVSETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPKKL

Query:  EPRSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLEEDHMRDHKP
        EPRSRLCQFVGYPKETRGGL FDP+ENRVFVSTNATFLEEDHMR+HKP
Subjt:  EPRSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLEEDHMRDHKP

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]8.3e-13193.55Show/hide
Query:  MTKRLFTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYM
        MTKR FTGK YRAKEPLELIHSDL GPMNVKARG FEYFISFIDDYSRYGYLYLME+KSEALEKFKEYK EVENLLSKKIKILRSDRG EYMDLRFQDYM
Subjt:  MTKRLFTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYM

Query:  IEHEIQFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVSETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPKKL
        IEH IQ QLSAPGTPQQNGVSERRNR LLDMVRSMMSYAQLPSSFWGYAVETA+HILNNVPSKSVSET F+LWRGRKPSLSHFRIWGCPAH+LVTNPKKL
Subjt:  IEHEIQFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVSETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPKKL

Query:  EPRSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLEEDHMRDHKP
        EPRSRLCQFVGYPKETRGGL FDPQENRVFVSTNATFLEEDHMR+HKP
Subjt:  EPRSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLEEDHMRDHKP

TYK02840.1 gag/pol protein [Cucumis melo var. makuwa]8.3e-13193.55Show/hide
Query:  MTKRLFTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYM
        MTKR FTGK YRAKEPLELIHSDL GPMNVKARG FEYFISFIDDYSRYGYLYLME+KSEALEKFKEYK EVENLLSKKIKILRSDRG EYMDLRFQDYM
Subjt:  MTKRLFTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYM

Query:  IEHEIQFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVSETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPKKL
        IEH IQ QLSAPGTPQQNGVSERRNR LLDMVRSMMSYAQLPSSFWGYAVETA+HILNNVPSKSVSET F+LWRGRKPSLSHFRIWGCPAH+LVTNPKKL
Subjt:  IEHEIQFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVSETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPKKL

Query:  EPRSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLEEDHMRDHKP
        EPRSRLCQFVGYPKETRGGL FDPQENRVFVSTNATFLEEDHMR+HKP
Subjt:  EPRSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLEEDHMRDHKP

TYK15984.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-12992.74Show/hide
Query:  MTKRLFTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYM
        MTKR FTGK YRAKEPL+LIHSDL GPMNVKARGSFEYFISFIDDYSRYGYLYLME+KSEALEKFKEYKAEVENLLSKKIKILRSDRG EYMDLRFQDYM
Subjt:  MTKRLFTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYM

Query:  IEHEIQFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVSETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPKKL
        IEH IQ QLSAPGTPQQNGVSERRNR LLDMV SMMSYAQLPSSFWGYAVETA+HILNNVPSKSVS+  F+LWRGRKPSLSHFRIWGCPAH+LVTNPKKL
Subjt:  IEHEIQFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVSETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPKKL

Query:  EPRSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLEEDHMRDHKP
        EPRSRLCQFVGYPKETRGGL FDPQENRVFVSTNATFLEEDHMR+HKP
Subjt:  EPRSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLEEDHMRDHKP

TrEMBL top hitse value%identityAlignment
A0A5A7T2V9 Gag/pol protein9.9e-13092.74Show/hide
Query:  MTKRLFTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYM
        MTKR FTGK YRAKEPLELIHSDL GPMNVKARGSFEYFISFIDDYSRYGYLYLME+KSEALEKFKEYK EVENLLSKKIKI RSDRG EYMDL FQDYM
Subjt:  MTKRLFTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYM

Query:  IEHEIQFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVSETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPKKL
        IEH IQ QLSAPGTPQQNGVSERRNR LLDMVRSMMSYAQLPSSFWGYAVETA+HILNNVPSKSVSET F+LWRGRKPSLSHFRIWGCPAH+LVTNPKKL
Subjt:  IEHEIQFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVSETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPKKL

Query:  EPRSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLEEDHMRDHKP
        EPRSRLCQFVGYPKETRGGL FDP+ENRVFVSTNATFLEEDHMR+HKP
Subjt:  EPRSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLEEDHMRDHKP

A0A5A7TZD0 Gag/pol protein4.0e-13193.55Show/hide
Query:  MTKRLFTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYM
        MTKR FTGK YRAKEPLELIHSDL GPMNVKARG FEYFISFIDDYSRYGYLYLME+KSEALEKFKEYK EVENLLSKKIKILRSDRG EYMDLRFQDYM
Subjt:  MTKRLFTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYM

Query:  IEHEIQFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVSETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPKKL
        IEH IQ QLSAPGTPQQNGVSERRNR LLDMVRSMMSYAQLPSSFWGYAVETA+HILNNVPSKSVSET F+LWRGRKPSLSHFRIWGCPAH+LVTNPKKL
Subjt:  IEHEIQFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVSETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPKKL

Query:  EPRSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLEEDHMRDHKP
        EPRSRLCQFVGYPKETRGGL FDPQENRVFVSTNATFLEEDHMR+HKP
Subjt:  EPRSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLEEDHMRDHKP

A0A5A7UYE8 Gag/pol protein4.0e-13193.55Show/hide
Query:  MTKRLFTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYM
        MTKR FTGK YRAKEPLELIHSDL GPMNVKARG FEYFISFIDDYSRYGYLYLME+KSEALEKFKEYK EVENLLSKKIKILRSDRG EYMDLRFQDYM
Subjt:  MTKRLFTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYM

Query:  IEHEIQFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVSETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPKKL
        IEH IQ QLSAPGTPQQNGVSERRNR LLDMVRSMMSYAQLPSSFWGYAVETA+HILNNVPSKSVSET F+LWRGRKPSLSHFRIWGCPAH+LVTNPKKL
Subjt:  IEHEIQFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVSETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPKKL

Query:  EPRSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLEEDHMRDHKP
        EPRSRLCQFVGYPKETRGGL FDPQENRVFVSTNATFLEEDHMR+HKP
Subjt:  EPRSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLEEDHMRDHKP

A0A5D3BUN8 Gag/pol protein4.0e-13193.55Show/hide
Query:  MTKRLFTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYM
        MTKR FTGK YRAKEPLELIHSDL GPMNVKARG FEYFISFIDDYSRYGYLYLME+KSEALEKFKEYK EVENLLSKKIKILRSDRG EYMDLRFQDYM
Subjt:  MTKRLFTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYM

Query:  IEHEIQFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVSETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPKKL
        IEH IQ QLSAPGTPQQNGVSERRNR LLDMVRSMMSYAQLPSSFWGYAVETA+HILNNVPSKSVSET F+LWRGRKPSLSHFRIWGCPAH+LVTNPKKL
Subjt:  IEHEIQFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVSETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPKKL

Query:  EPRSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLEEDHMRDHKP
        EPRSRLCQFVGYPKETRGGL FDPQENRVFVSTNATFLEEDHMR+HKP
Subjt:  EPRSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLEEDHMRDHKP

A0A5D3CYF4 Gag/pol protein7.6e-13092.74Show/hide
Query:  MTKRLFTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYM
        MTKR FTGK YRAKEPL+LIHSDL GPMNVKARGSFEYFISFIDDYSRYGYLYLME+KSEALEKFKEYKAEVENLLSKKIKILRSDRG EYMDLRFQDYM
Subjt:  MTKRLFTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYM

Query:  IEHEIQFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVSETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPKKL
        IEH IQ QLSAPGTPQQNGVSERRNR LLDMV SMMSYAQLPSSFWGYAVETA+HILNNVPSKSVS+  F+LWRGRKPSLSHFRIWGCPAH+LVTNPKKL
Subjt:  IEHEIQFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVSETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPKKL

Query:  EPRSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLEEDHMRDHKP
        EPRSRLCQFVGYPKETRGGL FDPQENRVFVSTNATFLEEDHMR+HKP
Subjt:  EPRSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLEEDHMRDHKP

SwissProt top hitse value%identityAlignment
P04146 Copia protein6.2e-3634.19Show/hide
Query:  KEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYMIEHEIQFQLSAPG
        K PL ++HSD+ GP+         YF+ F+D ++ Y   YL++YKS+    F+++ A+ E   + K+  L  D G EY+    + + ++  I + L+ P 
Subjt:  KEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYMIEHEIQFQLSAPG

Query:  TPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSV---SETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPK-KLEPRSRLCQF
        TPQ NGVSER  R + +  R+M+S A+L  SFWG AV TA +++N +PS+++   S+T +++W  +KP L H R++G   ++ + N + K + +S    F
Subjt:  TPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSV---SETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPK-KLEPRSRLCQF

Query:  VGYPKETRGGLLFDPQENRVFVSTNATFLEEDHM
        VGY  E  G  L+D   N  F+      ++E +M
Subjt:  VGYPKETRGGLLFDPQENRVFVSTNATFLEEDHM

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.3e-4539.47Show/hide
Query:  LELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYMIEHEIQFQLSAPGTPQ
        L+L++SD+ GPM +++ G  +YF++FIDD SR  ++Y+++ K +  + F+++ A VE    +K+K LRSD G EY    F++Y   H I+ + + PGTPQ
Subjt:  LELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYMIEHEIQFQLSAPGTPQ

Query:  QNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVS-ETLFKLWRGRKPSLSHFRIWGCP--AHMLVTNPKKLEPRSRLCQFVGYP
         NGV+ER NR +++ VRSM+  A+LP SFWG AV+TA +++N  PS  ++ E   ++W  ++ S SH +++GC   AH+      KL+ +S  C F+GY 
Subjt:  QNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVS-ETLFKLWRGRKPSLSHFRIWGCP--AHMLVTNPKKLEPRSRLCQFVGYP

Query:  KETRGGLLFDPQENRVFVSTNATFLEED
         E  G  L+DP + +V  S +  F E +
Subjt:  KETRGGLLFDPQENRVFVSTNATFLEED

Q12491 Transposon Ty2-B Gag-Pol polyprotein5.4e-1623.43Show/hide
Query:  KCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSE--ALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYMIEHEIQ
        K   + EP + +H+D++GP++   + +  YFISF D+ +R+ ++Y +  + E   L  F    A ++N  + ++ +++ DRG EY +     +     I 
Subjt:  KCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSE--ALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYMIEHEIQ

Query:  FQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVSETLFKLWRGRKPSLSHFRIWGCPAHMLVTNP-KKLEPRSR
           +     + +GV+ER NR LL+  R+++  + LP+  W  AVE +  I N++ S    ++  +        ++    +G P  +   NP  K+ PR  
Subjt:  FQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVSETLFKLWRGRKPSLSHFRIWGCPAHMLVTNP-KKLEPRSR

Query:  LCQFVGYPKETRGGLLFDPQENRVFVSTNATFLEEDHMR
            +   + + G +++ P   +   +TN   L+++  +
Subjt:  LCQFVGYPKETRGGLLFDPQENRVFVSTNATFLEEDHMR

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE17.8e-3129.96Show/hide
Query:  FTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYMIEHEI
        F+     +  PLE I+SD++    + +  ++ Y++ F+D ++RY +LY ++ KS+  E F  +K  +EN    +I    SD G E++ L   +Y  +H I
Subjt:  FTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYMIEHEI

Query:  QFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVS-ETLFKLWRGRKPSLSHFRIWGCPAH--MLVTNPKKLEP
            S P TP+ NG+SER++R +++   +++S+A +P ++W YA   A++++N +P+  +  E+ F+   G  P+    R++GC  +  +   N  KL+ 
Subjt:  QFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVS-ETLFKLWRGRKPSLSHFRIWGCPAH--MLVTNPKKLEP

Query:  RSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLE
        +SR C F+GY       L    Q +R+++S +  F E
Subjt:  RSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLE

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE29.2e-3230.38Show/hide
Query:  FTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYMIEHEI
        F+     + +PLE I+SD++    + +  ++ Y++ F+D ++RY +LY ++ KS+  + F  +K+ VEN    +I  L SD G E++ LR  DY+ +H I
Subjt:  FTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYMIEHEI

Query:  QFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVS-ETLFKLWRGRKPSLSHFRIWGCPAH--MLVTNPKKLEP
            S P TP+ NG+SER++R +++M  +++S+A +P ++W YA   A++++N +P+  +  ++ F+   G+ P+    +++GC  +  +   N  KLE 
Subjt:  QFQLSAPGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVS-ETLFKLWRGRKPSLSHFRIWGCPAH--MLVTNPKKLEP

Query:  RSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLE
        +S+ C F+GY       L       R++ S +  F E
Subjt:  RSRLCQFVGYPKETRGGLLFDPQENRVFVSTNATFLE

Arabidopsis top hitse value%identityAlignment
ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.3e-0834.15Show/hide
Query:  NRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVS-ETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPKKLEPRSR
        NR +++ VRSM+    LP +F   A  TA+HI+N  PS +++     ++W    P+ S+ R +GC A+ +  +  KL+PR++
Subjt:  NRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVS-ETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPKKLEPRSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAAGAGACTTTTTACTGGAAAATGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTCTATGGTCCGATGAATGTAAAAGCTAGAGGGAGTTTTGA
ATACTTCATCTCTTTTATAGATGATTATTCTAGGTATGGGTATTTATACTTAATGGAGTATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGGCTGAAGTTGAAA
ATCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGAAGAGTACATGGATTTGAGATTCCAGGACTATATGATAGAACATGAAATCCAATTCCAACTCTCA
GCACCTGGTACACCTCAACAAAATGGTGTATCAGAAAGGAGAAATAGAATCTTGTTAGACATGGTTCGTTCAATGATGAGTTACGCTCAATTGCCAAGCTCGTTTTGGGG
GTATGCAGTAGAGACTGCAATTCATATCTTGAACAATGTTCCCTCGAAGAGTGTTTCTGAAACACTTTTCAAGTTATGGAGAGGACGTAAACCTAGTTTAAGTCATTTCA
GAATTTGGGGTTGTCCAGCACACATGTTAGTGACAAATCCCAAGAAGTTGGAACCTCGTTCAAGGTTATGCCAATTTGTTGGTTACCCTAAAGAAACGAGAGGTGGTTTA
CTCTTCGATCCACAAGAAAATAGAGTGTTTGTATCAACAAATGCTACTTTCTTGGAAGAAGACCACATGAGAGATCATAAACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGACAAAGAGACTTTTTACTGGAAAATGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTCTATGGTCCGATGAATGTAAAAGCTAGAGGGAGTTTTGA
ATACTTCATCTCTTTTATAGATGATTATTCTAGGTATGGGTATTTATACTTAATGGAGTATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGGCTGAAGTTGAAA
ATCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGAAGAGTACATGGATTTGAGATTCCAGGACTATATGATAGAACATGAAATCCAATTCCAACTCTCA
GCACCTGGTACACCTCAACAAAATGGTGTATCAGAAAGGAGAAATAGAATCTTGTTAGACATGGTTCGTTCAATGATGAGTTACGCTCAATTGCCAAGCTCGTTTTGGGG
GTATGCAGTAGAGACTGCAATTCATATCTTGAACAATGTTCCCTCGAAGAGTGTTTCTGAAACACTTTTCAAGTTATGGAGAGGACGTAAACCTAGTTTAAGTCATTTCA
GAATTTGGGGTTGTCCAGCACACATGTTAGTGACAAATCCCAAGAAGTTGGAACCTCGTTCAAGGTTATGCCAATTTGTTGGTTACCCTAAAGAAACGAGAGGTGGTTTA
CTCTTCGATCCACAAGAAAATAGAGTGTTTGTATCAACAAATGCTACTTTCTTGGAAGAAGACCACATGAGAGATCATAAACCATGA
Protein sequenceShow/hide protein sequence
MTKRLFTGKCYRAKEPLELIHSDLYGPMNVKARGSFEYFISFIDDYSRYGYLYLMEYKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYMIEHEIQFQLS
APGTPQQNGVSERRNRILLDMVRSMMSYAQLPSSFWGYAVETAIHILNNVPSKSVSETLFKLWRGRKPSLSHFRIWGCPAHMLVTNPKKLEPRSRLCQFVGYPKETRGGL
LFDPQENRVFVSTNATFLEEDHMRDHKP