; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc07g0198331 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc07g0198331
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRibonuclease H
Genome locationCMiso1.1chr07:21538203..21538976
RNA-Seq ExpressionCmc07g0198331
SyntenyCmc07g0198331
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]2.1e-13793Show/hide
Query:  MKPDVLIKIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDRE
        MKPD+LIK+KEEVQKQIEAGFL VSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTA YSTFSFMDGFSGYNQIKMAEEDRE
Subjt:  MKPDVLIKIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDRE

Query:  KTTFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEE
        KTTFITLWGTFCYKVM FGLKN GATYQR MVTLFHD MHKEIEVYVDDMIAKSK +EDHTT LQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEE
Subjt:  KTTFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEE

Query:  GIRVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNP
        GI+VDPDKV+AIM+M SP+TEKE+R FLGRLNYISRFISHLTPTCEPIFKLLRKNNP
Subjt:  GIRVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNP

XP_031738857.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus]2.1e-13793Show/hide
Query:  MKPDVLIKIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDRE
        MKPD+LIK+KEEVQKQIEAGFL VSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTA YSTFSFMDGFSGYNQIKMAEEDRE
Subjt:  MKPDVLIKIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDRE

Query:  KTTFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEE
        KTTFITLWGTFCYKVM FGLKN GATYQR MVTLFHD MHKEIEVYVDDMIAKSK +EDHTT LQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEE
Subjt:  KTTFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEE

Query:  GIRVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNP
        GI+VDPDKV+AIM+M SP+TEKE+R FLGRLNYISRFISHLTPTCEPIFKLLRKNNP
Subjt:  GIRVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNP

XP_031739260.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402917 [Cucumis sativus]1.9e-13893.77Show/hide
Query:  MKPDVLIKIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDRE
        MKPD+LIKIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTA YSTFSFMDGFSGYNQIKMAEEDRE
Subjt:  MKPDVLIKIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDRE

Query:  KTTFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEE
        KTTFITLWGTFCYKVM FGLKN GATYQR MVTLFHD MHKEIEVYVDDMIAKSK +EDHTT LQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEE
Subjt:  KTTFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEE

Query:  GIRVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNP
        GI+VDPDKV+AIM+M SP+TEKE+R FLGRLNYISRFISHLTPTCEPIFKLLRKNNP
Subjt:  GIRVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNP

XP_031740016.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116403346 [Cucumis sativus]2.1e-13793Show/hide
Query:  MKPDVLIKIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDRE
        MKPD+LIK+KEEVQKQIEAGFL VSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTA YSTFSFMDGFSGYNQIKMAEEDRE
Subjt:  MKPDVLIKIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDRE

Query:  KTTFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEE
        KTTFITLWGTFCYKVM FGLKN GATYQR MVTLFHD MHKEIEVYVDDMIAKSK +EDHTT LQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEE
Subjt:  KTTFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEE

Query:  GIRVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNP
        GI+VDPDKV+AIM+M SP+TEKE+R FLGRLNYISRFISHLTPTCEPIFKLLRKNNP
Subjt:  GIRVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNP

XP_031741309.1 LOW QUALITY PROTEIN: uncharacterized protein LOC105435093 [Cucumis sativus]2.1e-13793Show/hide
Query:  MKPDVLIKIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDRE
        MKPD+LIK+KEEVQKQIEAGFL VSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTA YSTFSFMDGFSGYNQIKMAEEDRE
Subjt:  MKPDVLIKIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDRE

Query:  KTTFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEE
        KTTFITLWGTFCYKVM FGLKN GATYQR MVTLFHD MHKEIEVYVDDMIAKSK +EDHTT LQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEE
Subjt:  KTTFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEE

Query:  GIRVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNP
        GI+VDPDKV+AIM+M SP+TEKE+R FLGRLNYISRFISHLTPTCEPIFKLLRKNNP
Subjt:  GIRVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNP

TrEMBL top hitse value%identityAlignment
A0A5A7T5W6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein6.2e-13595.16Show/hide
Query:  KEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDREKTTFITLWG
        +EEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMC+DYRDLNRASPKDNFPLPHIDMLVDNTA YSTFSFMDGFSGYNQIKMAEEDREKTTFITLWG
Subjt:  KEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDREKTTFITLWG

Query:  TFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEEGIRVDPDKV
        TFCYKVM FGLKN GATYQR MVTLFHD MHKEIEVYVDDMIAKSK DEDHTTTLQKLFDRLRKYQLKLNPSKCTFGAT GKLLGFIVSEEGI+VDPDKV
Subjt:  TFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEEGIRVDPDKV

Query:  RAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNP
        RAIMEM SPKTEKEIRGFLGRLNYISRFIS+LTPTCEPIFKLLRKNNP
Subjt:  RAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNP

A0A5A7VK41 Reverse transcriptase domain-containing protein1.3e-13593.77Show/hide
Query:  MKPDVLIKIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDRE
        MKPDVLIKIKEEVQKQIEAGFLTV KYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDN PLPHIDMLV+NTA YSTFSFMDGFSGYNQIKMAEEDRE
Subjt:  MKPDVLIKIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDRE

Query:  KTTFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEE
        K TFITLWGTF YKVM FGLKNVGATYQR MVTLFHD MHKEIEVYVDDMIAKSK DEDHT TLQKLFDRLRKYQLK NPSKCTFGATSGKLLGFIVSEE
Subjt:  KTTFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEE

Query:  GIRVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNP
        GI+VDPDKVRAIMEMSSPK EKEIRGFLGRLNYISRFISHLTPTCE IFKLL KNNP
Subjt:  GIRVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNP

A0A6J1D099 Ribonuclease H1.4e-12685.16Show/hide
Query:  MKPDVLIKIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDRE
        M+PD+LIKIK EV+KQI+AGFLTVS YPEWVANIVPVPKK+G+VRMCVDYRDLNRASPKDNFPLPHID+LVDNTA +STFSFMDGFSGYNQIKMA EDRE
Subjt:  MKPDVLIKIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDRE

Query:  KTTFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEE
        KTTFITLWGTFCYKVMSFGLKN GATYQR MVTLFHD MHKEIEVYVDDMIAKSK  E+HTT L+KLFDRLRK++LKLN +KC FGAT+GKLLGF+VS+E
Subjt:  KTTFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEE

Query:  GIRVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNN
        GI+VDPDKV+AI+EM  P+T+KE+RGFLGRLNYI+RFISHLT TCEPIFKLLRKNN
Subjt:  GIRVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNN

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222314.8e-12784.77Show/hide
Query:  MKPDVLIKIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDRE
        M+PD+LIK+K+EV+KQI+AGFLTVS YPEWVANIVPVPKK+G+VRMCVDYRDLNRASPKDNFPLPHID+LVDNTA +STFSFMDGFSGYN+IKMA EDRE
Subjt:  MKPDVLIKIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDRE

Query:  KTTFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEE
        KTTFITLWGTFCYKVMSFGLKN GATYQR MVTLFHD MHKEIEVYVDDMIAKS+  E+HT  L+KLF+RLRK+QLKLNP+KCTFG TSGKLLGF+V +E
Subjt:  KTTFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEE

Query:  GIRVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNN
        GI+VDPDKV+AI+EMS PKT KE+RGFLGRLNYI+RFISHLT TCEPIFKLLRKNN
Subjt:  GIRVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNN

A0A6J1DZ90 Ribonuclease H3.4e-12584.38Show/hide
Query:  MKPDVLIKIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDRE
        M+PD+LIKIK+EV+KQI+AGFLTVS YPEWVANIVPVPKK+G+VRMCVDYRDLNRASPKDNFPLPHID+LVDNTA +STFSFM GFSG N IKMA EDRE
Subjt:  MKPDVLIKIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDRE

Query:  KTTFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEE
        KTTFITLWGTFCYKVM FGLKNVGATYQR MVTLFHD MHKEIEVYVDDMIAKSK  E+HTT L+KLFDRLRK++LKLNP+KC FGAT+GKLLGF+VS+E
Subjt:  KTTFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEE

Query:  GIRVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNN
        GI+VDPDKV+AI+EM  P+T+KE+RGFLGRLNYI+RFISHLT TCEPIFKLLRKNN
Subjt:  GIRVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNN

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.4e-3733.99Show/hide
Query:  KIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDG-----KVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDREKT
        +++ ++Q  +  G +  S  P + + I  VPKK       K R+ +DYR LN  +  D  P+P++D ++    R + F+ +D   G++QI+M  E   KT
Subjt:  KIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDG-----KVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDREKT

Query:  TFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEEGI
         F T  G + Y  M FGLKN  AT+QR M  +    ++K   VY+DD+I  S   ++H  +L  +F++L K  LKL   KC F       LG +++ +GI
Subjt:  TFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEEGI

Query:  RVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKN
        + +P+K+ AI +   P   KEI+ FLG   Y  +FI +     +P+ K L+KN
Subjt:  RVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKN

P20825 Retrovirus-related Pol polyprotein from transposon 2972.0e-3734.13Show/hide
Query:  IKIKEEVQKQIEAGFLTVS----KYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDREKT
        I+++ +VQ+ +  G +  S      P WV    P      K R+ +DYR LN  +  D +P+P++D ++    +   F+ +D   G++QI+M EE   KT
Subjt:  IKIKEEVQKQIEAGFLTVS----KYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDREKT

Query:  TFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEEGI
         F T  G + Y  M FGL+N  AT+QR M  +    ++K   VY+DD+I  S    +H  ++Q +F +L    LKL   KC F       LG IV+ +GI
Subjt:  TFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEEGI

Query:  RVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRK
        + +P KV+AI+    P  +KEIR FLG   Y  +FI +     +P+   L+K
Subjt:  RVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRK

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein6.6e-4138.59Show/hide
Query:  KIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDREKTTFITL
        +I + VQK ++  F+  SK P   + +V VPKKDG  R+CVDYR LN+A+  D FPLP ID L+        F+ +D  SGY+QI M  +DR KT F+T 
Subjt:  KIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDREKTTFITL

Query:  WGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEEGIRVDPD
         G + Y VM FGL N  +T+ R M   F D   + + VY+DD++  S+  E+H   L  + +RL+   L +   KC F +   + LG+ +  + I     
Subjt:  WGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEEGIRVDPD

Query:  KVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPI
        K  AI +  +PKT K+ + FLG +NY  RFI + +   +PI
Subjt:  KVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPI

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.9e-3533.73Show/hide
Query:  IKIKEEVQKQIEA----GFLTVSKYPE----WVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEED
        + ++ EV++QI+     G +  S  P     W+    P P  + + RM VD++ LN  +  D +P+P I+  + +      F+ +D  SG++QI M E D
Subjt:  IKIKEEVQKQIEA----GFLTVSKYPE----WVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEED

Query:  REKTTFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVS
          KT F TL G + +  + FGLKN  A +QR +  +  + + K   VY+DD+I  S+  + H   L+ +   L K  L++N  K  F  T  + LG+IV+
Subjt:  REKTTFITLWGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVS

Query:  EEGIRVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLR
         +GI+ DP KVRAI EM  P + KE++ FLG  +Y  +FI       +P+  L R
Subjt:  EEGIRVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLR

Q99315 Transposon Ty3-G Gag-Pol polyprotein6.6e-4138.59Show/hide
Query:  KIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDREKTTFITL
        +I + VQK ++  F+  SK P   + +V VPKKDG  R+CVDYR LN+A+  D FPLP ID L+        F+ +D  SGY+QI M  +DR KT F+T 
Subjt:  KIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDREKTTFITL

Query:  WGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEEGIRVDPD
         G + Y VM FGL N  +T+ R M   F D   + + VY+DD++  S+  E+H   L  + +RL+   L +   KC F +   + LG+ +  + I     
Subjt:  WGTFCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEEGIRVDPD

Query:  KVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPI
        K  AI +  +PKT K+ + FLG +NY  RFI + +   +PI
Subjt:  KVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPI

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein9.5e-1137.21Show/hide
Query:  KYQLKLNPSKCTFGATSGKLLG--FIVSEEGIRVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNN
        ++Q   N  KC FG      LG   I+S EG+  DP K+ A++    PK   E+RGFLG   Y  RF+ +      P+ +LL+KN+
Subjt:  KYQLKLNPSKCTFGATSGKLLG--FIVSEEGIRVDPDKVRAIMEMSSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACCTGATGTACTGATTAAAATAAAGGAGGAAGTACAAAAGCAAATTGAAGCAGGATTCCTCACAGTCTCCAAATATCCTGAATGGGTGGCAAACATTGTTCCAGT
GCCCAAAAAAGACGGAAAAGTGAGAATGTGTGTGGATTATAGAGATTTAAATCGAGCTAGTCCAAAAGATAACTTCCCTTTACCTCATATCGACATGTTGGTGGATAACA
CTGCAAGATACTCAACTTTCTCCTTCATGGATGGTTTTTCAGGATACAATCAGATCAAAATGGCTGAAGAAGATAGAGAAAAAACGACATTCATTACCCTTTGGGGAACA
TTTTGTTACAAAGTAATGTCTTTTGGTTTGAAAAATGTTGGGGCAACGTATCAGCGAACAATGGTTACACTTTTTCATGATAAGATGCATAAAGAAATAGAGGTGTATGT
TGATGATATGATCGCAAAATCCAAGGTAGATGAAGATCATACAACCACACTCCAAAAATTATTTGATCGGTTGAGAAAATATCAATTGAAATTAAATCCATCCAAATGTA
CATTTGGGGCAACCTCGGGAAAGCTACTGGGATTCATCGTCAGCGAAGAAGGGATCAGAGTAGACCCGGATAAAGTAAGGGCTATCATGGAAATGTCATCCCCTAAAACA
GAAAAAGAAATTCGAGGTTTTCTGGGAAGATTGAACTACATATCCAGATTTATCTCACATTTAACACCAACATGCGAACCAATCTTCAAGCTCTTACGTAAAAACAACCC
ATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAACCTGATGTACTGATTAAAATAAAGGAGGAAGTACAAAAGCAAATTGAAGCAGGATTCCTCACAGTCTCCAAATATCCTGAATGGGTGGCAAACATTGTTCCAGT
GCCCAAAAAAGACGGAAAAGTGAGAATGTGTGTGGATTATAGAGATTTAAATCGAGCTAGTCCAAAAGATAACTTCCCTTTACCTCATATCGACATGTTGGTGGATAACA
CTGCAAGATACTCAACTTTCTCCTTCATGGATGGTTTTTCAGGATACAATCAGATCAAAATGGCTGAAGAAGATAGAGAAAAAACGACATTCATTACCCTTTGGGGAACA
TTTTGTTACAAAGTAATGTCTTTTGGTTTGAAAAATGTTGGGGCAACGTATCAGCGAACAATGGTTACACTTTTTCATGATAAGATGCATAAAGAAATAGAGGTGTATGT
TGATGATATGATCGCAAAATCCAAGGTAGATGAAGATCATACAACCACACTCCAAAAATTATTTGATCGGTTGAGAAAATATCAATTGAAATTAAATCCATCCAAATGTA
CATTTGGGGCAACCTCGGGAAAGCTACTGGGATTCATCGTCAGCGAAGAAGGGATCAGAGTAGACCCGGATAAAGTAAGGGCTATCATGGAAATGTCATCCCCTAAAACA
GAAAAAGAAATTCGAGGTTTTCTGGGAAGATTGAACTACATATCCAGATTTATCTCACATTTAACACCAACATGCGAACCAATCTTCAAGCTCTTACGTAAAAACAACCC
ATGA
Protein sequenceShow/hide protein sequence
MKPDVLIKIKEEVQKQIEAGFLTVSKYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKDNFPLPHIDMLVDNTARYSTFSFMDGFSGYNQIKMAEEDREKTTFITLWGT
FCYKVMSFGLKNVGATYQRTMVTLFHDKMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEEGIRVDPDKVRAIMEMSSPKT
EKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNP