; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc07g0200901 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc07g0200901
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionpolyadenylate-binding protein 2-like
Genome locationCMiso1.1chr07:23516135..23517378
RNA-Seq ExpressionCmc07g0200901
SyntenyCmc07g0200901
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8637153.1 hypothetical protein CSA_004635 [Cucumis sativus]2.4e-4796.49Show/hide
Query:  MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQA
        MQFYASNEEISRN+S I SERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSA QA
Subjt:  MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQA

Query:  GKEETDSRSVFVGN
        GKEETDSRSVFVGN
Subjt:  GKEETDSRSVFVGN

KAE8637180.1 hypothetical protein CSA_018811 [Cucumis sativus]2.4e-4796.49Show/hide
Query:  MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQA
        MQFYASNEEISRN+S I SERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSA QA
Subjt:  MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQA

Query:  GKEETDSRSVFVGN
        GKEETDSRSVFVGN
Subjt:  GKEETDSRSVFVGN

KAG7015378.1 Polyadenylate-binding protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma]7.3e-4988.98Show/hide
Query:  EEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDS
        EEISRN   IA ER+MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTS  QAGKEETDS
Subjt:  EEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDS

Query:  RSVFVGNVRRKMSLLMFFRFEKNFLVI
        RSVFVGNVRRKMSL MFFRF+K+FLV+
Subjt:  RSVFVGNVRRKMSLLMFFRFEKNFLVI

KGN53209.1 hypothetical protein Csa_014786 [Cucumis sativus]8.1e-4896.52Show/hide
Query:  MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQA
        MQFYASNEEISRN+S I SERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSA QA
Subjt:  MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQA

Query:  GKEETDSRSVFVGNV
        GKEETDSRSVFVGNV
Subjt:  GKEETDSRSVFVGNV

XP_008453809.2 PREDICTED: polyadenylate-binding protein 2 isoform X1 [Cucumis melo]3.0e-50100Show/hide
Query:  MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQA
        MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQA
Subjt:  MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQA

Query:  GKEETDSRSVFVGNV
        GKEETDSRSVFVGNV
Subjt:  GKEETDSRSVFVGNV

TrEMBL top hitse value%identityAlignment
A0A0A0KWF2 RRM domain-containing protein3.9e-4896.52Show/hide
Query:  MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQA
        MQFYASNEEISRN+S I SERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSA QA
Subjt:  MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQA

Query:  GKEETDSRSVFVGNV
        GKEETDSRSVFVGNV
Subjt:  GKEETDSRSVFVGNV

A0A1S3BX92 polyadenylate-binding protein 2 isoform X11.4e-50100Show/hide
Query:  MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQA
        MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQA
Subjt:  MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQA

Query:  GKEETDSRSVFVGNV
        GKEETDSRSVFVGNV
Subjt:  GKEETDSRSVFVGNV

A0A5D3D298 Polyadenylate-binding protein 2 isoform X11.4e-50100Show/hide
Query:  MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQA
        MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQA
Subjt:  MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQA

Query:  GKEETDSRSVFVGNV
        GKEETDSRSVFVGNV
Subjt:  GKEETDSRSVFVGNV

A0A6J1C6V0 polyadenylate-binding protein 2-like isoform X18.2e-3897.85Show/hide
Query:  MEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSRSVFVGNV
        MEEEEHEVYGGEIPVEGEM+GDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSA QAGKEETDSRSVFVGNV
Subjt:  MEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSRSVFVGNV

A0A6J1EN98 polyadenylate-binding protein 2-like3.5e-3694.62Show/hide
Query:  MEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSRSVFVGNV
        MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTS  QAGKEETDSRSVFVGNV
Subjt:  MEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSRSVFVGNV

SwissProt top hitse value%identityAlignment
Q28ZX3 Polyadenylate-binding protein 22.0e-0435.71Show/hide
Query:  SNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEM--GAVQDPAGTSAGQAGKE
        ++E+IS N  ++    +    E E    EI  E E EG + +         EL+ +K R+KEMEEEA  +++MQ++V+K+M  G+    A        K+
Subjt:  SNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEM--GAVQDPAGTSAGQAGKE

Query:  ETDSRSVFVGNV
        E D+RSV+VGNV
Subjt:  ETDSRSVFVGNV

Q7KNF2 Polyadenylate-binding protein 29.8e-0434.82Show/hide
Query:  SNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEM--GAVQDPAGTSAGQAGKE
        ++E+I+ N  ++    +    E E    EI  E E EG + +         EL+ +K R+KEMEEEA  +++MQ++V+K+M  G+    A        K+
Subjt:  SNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEM--GAVQDPAGTSAGQAGKE

Query:  ETDSRSVFVGNV
        E D+RSV+VGNV
Subjt:  ETDSRSVFVGNV

Q93VI4 Polyadenylate-binding protein 19.1e-1855.14Show/hide
Query:  EEEEHEVYGGEIP--VEGEME--------GDVDMSAGDDD-----AVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSR
        +E+EHEVYGGEIP   EGEM+        G+   +AGD++     + ++L++MKKR+KE+EEEA ALREMQAK EK+MGA QDP+G     A KEE DSR
Subjt:  EEEEHEVYGGEIP--VEGEME--------GDVDMSAGDDD-----AVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSR

Query:  SVFVGNV
        S++VGNV
Subjt:  SVFVGNV

Q9FJN9 Polyadenylate-binding protein 22.1e-3079Show/hide
Query:  MEEEEHEVYGGEIPVEGEMEG-------DVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSRSVFVGNV
        MEEEEHEVYGGEIP  GEM+G       D+DM+A DDDAVKELDEMKKRLKEME+EAAALREMQAKVEKEMGA QDPA  +A QAGKEE D+RSVFVGNV
Subjt:  MEEEEHEVYGGEIPVEGEMEG-------DVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSRSVFVGNV

Q9LX90 Polyadenylate-binding protein 35.7e-2875Show/hide
Query:  MEEEEHEVYGGEIPVEGEM---EGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSRSVFVGNV
        MEEEEHEVYGGEIP  G+    + D+DMSA D+DAV EL EMK+RLKEMEEEAAALREMQAKVEKEMGA QDPA  +A Q GKEE D+RSV+VGNV
Subjt:  MEEEEHEVYGGEIPVEGEM---EGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSRSVFVGNV

Arabidopsis top hitse value%identityAlignment
AT5G10350.1 RNA-binding (RRM/RBD/RNP motifs) family protein4.0e-2975Show/hide
Query:  MEEEEHEVYGGEIPVEGEM---EGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSRSVFVGNV
        MEEEEHEVYGGEIP  G+    + D+DMSA D+DAV EL EMK+RLKEMEEEAAALREMQAKVEKEMGA QDPA  +A Q GKEE D+RSV+VGNV
Subjt:  MEEEEHEVYGGEIPVEGEM---EGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSRSVFVGNV

AT5G10350.2 RNA-binding (RRM/RBD/RNP motifs) family protein4.0e-2975Show/hide
Query:  MEEEEHEVYGGEIPVEGEM---EGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSRSVFVGNV
        MEEEEHEVYGGEIP  G+    + D+DMSA D+DAV EL EMK+RLKEMEEEAAALREMQAKVEKEMGA QDPA  +A Q GKEE D+RSV+VGNV
Subjt:  MEEEEHEVYGGEIPVEGEM---EGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSRSVFVGNV

AT5G51120.1 polyadenylate-binding protein 16.5e-1955.14Show/hide
Query:  EEEEHEVYGGEIP--VEGEME--------GDVDMSAGDDD-----AVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSR
        +E+EHEVYGGEIP   EGEM+        G+   +AGD++     + ++L++MKKR+KE+EEEA ALREMQAK EK+MGA QDP+G     A KEE DSR
Subjt:  EEEEHEVYGGEIP--VEGEME--------GDVDMSAGDDD-----AVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSR

Query:  SVFVGNV
        S++VGNV
Subjt:  SVFVGNV

AT5G51120.2 polyadenylate-binding protein 12.6e-1238.89Show/hide
Query:  EEEEHEVYGGEIP--VEGEME--------GDVDMSAGDDD-----AVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQ------------------
        +E+EHEVYGGEIP   EGEM+        G+   +AGD++     + ++L++MKKR+KE+EEEA ALREMQAK EK+MGA Q                  
Subjt:  EEEEHEVYGGEIP--VEGEME--------GDVDMSAGDDD-----AVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQ------------------

Query:  -------------------DPAGTSAGQAGKEETDSRSVFVGNV
                           +   +    A KEE DSRS++VGNV
Subjt:  -------------------DPAGTSAGQAGKEETDSRSVFVGNV

AT5G65260.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.5e-3179Show/hide
Query:  MEEEEHEVYGGEIPVEGEMEG-------DVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSRSVFVGNV
        MEEEEHEVYGGEIP  GEM+G       D+DM+A DDDAVKELDEMKKRLKEME+EAAALREMQAKVEKEMGA QDPA  +A QAGKEE D+RSVFVGNV
Subjt:  MEEEEHEVYGGEIPVEGEMEG-------DVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSRSVFVGNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTTCTACGCATCGAACGAGGAGATTTCTAGAAACCGAAGCGAAATTGCGAGCGAACGAGATATGGAGGAAGAAGAGCACGAGGTATACGGTGGAGAGATCCCAGT
TGAAGGGGAGATGGAAGGGGACGTCGACATGTCCGCCGGCGACGACGACGCTGTCAAGGAGCTTGACGAGATGAAAAAGCGCTTGAAGGAGATGGAGGAAGAAGCAGCTG
CTCTTCGAGAAATGCAGGCCAAGGTTGAAAAAGAAATGGGAGCTGTGCAAGATCCTGCTGGTACATCAGCTGGTCAAGCAGGCAAGGAGGAGACTGATTCACGATCAGTA
TTTGTTGGCAATGTGAGAAGAAAAATGTCCCTACTGATGTTCTTTAGATTTGAGAAAAACTTTTTAGTTATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGTTCTACGCATCGAACGAGGAGATTTCTAGAAACCGAAGCGAAATTGCGAGCGAACGAGATATGGAGGAAGAAGAGCACGAGGTATACGGTGGAGAGATCCCAGT
TGAAGGGGAGATGGAAGGGGACGTCGACATGTCCGCCGGCGACGACGACGCTGTCAAGGAGCTTGACGAGATGAAAAAGCGCTTGAAGGAGATGGAGGAAGAAGCAGCTG
CTCTTCGAGAAATGCAGGCCAAGGTTGAAAAAGAAATGGGAGCTGTGCAAGATCCTGCTGGTACATCAGCTGGTCAAGCAGGCAAGGAGGAGACTGATTCACGATCAGTA
TTTGTTGGCAATGTGAGAAGAAAAATGTCCCTACTGATGTTCTTTAGATTTGAGAAAAACTTTTTAGTTATTTGATCTGTGGAAAAATGTTATTGAAATGAGGAATTTCT
ACAAAAATTCAAAAAGAAAAAAAAAAAAAAAGGAAGGAAGAAGAAAAGAAAAAAGAAAGAAGAAAACTGTGAACGATGGTTGAAATACTGGTATAATGGGAAAAAATCAT
TGAGAAAAAGAAAGAAAGAAAGAAAGAAAGAAAAAAATCTGAAACGTCAAAAACCATTAGTGAATTGTTGCATTTAAACAAAGGGACTGTTGCGAGTAGAACTTATGTTG
CTGTAAGACATGCGCTTTGGAGGCTGAGACCGTTAAATGTGGAATAAAGATGTTGATGACTCAACTCTAGGTGACAACTCAAATGTCTC
Protein sequenceShow/hide protein sequence
MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSRSV
FVGNVRRKMSLLMFFRFEKNFLVI