CuGenDBv2

Gene ID	Cmc07g0201301
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	zinc finger CCCH domain-containing protein 54
Genome location	CMiso1.1chr07:23759785..23760297
RNA-Seq Expression	Cmc07g0201301
Synteny	Cmc07g0201301
Gene Ontology terms	GO:0006349 - regulation of gene expression by genetic imprinting (biological process) GO:0009910 - negative regulation of flower development (biological process) GO:0005634 - nucleus (cellular component) GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function) GO:0031490 - chromatin DNA binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000571 - Zinc finger, CCCH-type IPR036855 - Zinc finger, CCCH-type superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KGN53171.2 hypothetical protein Csa_015342 [Cucumis sativus]

1.4e-89

91.18

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Query:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
        MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPR+FNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
Subjt:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR

Query:  PETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK
        PETK K + +A +QRVAV A+ESPPEEKNDGILEIPAR +G GRKNERSFG DV+ELELPHIEWISELLK
Subjt:  PETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK

XP_008454474.1 PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo]

1.7e-98

100

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Query:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
        MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
Subjt:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR

Query:  PETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK
        PETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK
Subjt:  PETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK

XP_022922815.1 zinc finger CCCH domain-containing protein 54 [Cucurbita moschata]

2.0e-75

77.65

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Query:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
        MY++KIQRCP++RSHDWTECPYAHRGEKAQRRDPRRFNY+AVACPAFR+GSCPKGDFCEFAHGVFE+WLHP RYRTRACNAGRFCQRKVCFFAHSPEELR
Subjt:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR

Query:  PETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK
        PETK K + +A   R A+AA+E P E KNDG+ EIP +E   G  NERS   + SE ELPHIEWISELL+
Subjt:  PETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK

XP_023553083.1 zinc finger CCCH domain-containing protein 54 [Cucurbita pepo subsp. pepo]

6.8e-76

78.24

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Query:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
        MY++KIQRCP++RSHDWTECPYAHRGEKAQRRDPRRFNY+AVACPAFR+GSCPKGDFCEFAHGVFE+WLHP RYRTRACNAGRFCQRKVCFFAHSPEELR
Subjt:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR

Query:  PETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK
        PETK K + +A   RVA+AA+E P E KNDG+ EIP +E   G  NERS   + SE ELPHIEWISELL+
Subjt:  PETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK

XP_038878131.1 zinc finger CCCH domain-containing protein 54 [Benincasa hispida]

1.6e-85

87.06

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Query:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
        MY+YKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSP+ELR
Subjt:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR

Query:  PETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK
        PETK KFN NA RQRVAVA VESP EEK DG  EIP R   GGR+ +RSFG +VSEL+LPH+EWISELL+
Subjt:  PETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BYP8 zinc finger CCCH domain-containing protein 54

8.1e-99

100

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Query:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
        MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
Subjt:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR

Query:  PETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK
        PETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK
Subjt:  PETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK

A0A5A7TRB5 Zinc finger CCCH domain-containing protein 54

8.1e-99

100

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Query:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
        MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
Subjt:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR

Query:  PETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK
        PETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK
Subjt:  PETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK

A0A6J1CHL2 zinc finger CCCH domain-containing protein 54 isoform X2

4.2e-71

72.16

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Query:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
        M++YKIQRCPR RSHDWTECPYAHRGEKAQRRD RRFNY+AVACPAFR+G+CP+GDFCE+AHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAH+PE+LR
Subjt:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR

Query:  PETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENG------GGRKNERSFGFDVSELELPHIEWISELLK
         ETK KF+ NA R RV V AVE+P E KND +  I     G        RKN+R+FG++VS+ +LPHI WI ELL+
Subjt:  PETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENG------GGRKNERSFGFDVSELELPHIEWISELLK

A0A6J1E9W0 zinc finger CCCH domain-containing protein 54

9.6e-76

77.65

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Query:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
        MY++KIQRCP++RSHDWTECPYAHRGEKAQRRDPRRFNY+AVACPAFR+GSCPKGDFCEFAHGVFE+WLHP RYRTRACNAGRFCQRKVCFFAHSPEELR
Subjt:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR

Query:  PETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK
        PETK K + +A   R A+AA+E P E KNDG+ EIP +E   G  NERS   + SE ELPHIEWISELL+
Subjt:  PETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK

A0A6J1JDT4 zinc finger CCCH domain-containing protein 54

1.6e-75

77.06

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Query:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
        MY++KIQRCP++RSHDWTECPYAHRGEKAQRRDPRRFNY+AVACPAFR+GSCPKGDFCEFAHGVFE+WLHP RYRTRACNAGRFCQRKVCFFAHSPEELR
Subjt:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR

Query:  PETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK
        PETK+K +  A  +R A+AA++ P E KNDG+ EIP +E   G  NERS   + SE ELPHIEWISELL+
Subjt:  PETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK

SwissProt top hits

e value

%identity

Alignment

O65036 Zinc finger CCCH domain-containing protein 54

7.9e-51

81.31

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Query:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
        MY+YKI+RCPR RSHDWTECPYAHRGEKA RRDPRR+ Y AVACPAFR+G+C +GD CEFAHGVFEYWLHPARYRTRACNAG  CQRKVCFFAH+PE+LR
Subjt:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR

Query:  -PETKHK
          E KH+
Subjt:  -PETKHK

O82199 Zinc finger CCCH domain-containing protein 20

3.3e-41

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Query:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
        MY +K++RC R RSHDWTECPYAH GEKA+RRDPR+F+Y+  ACP FR G C +GD CEF+HGVFE WLHPARYRT+ C  G  C+R+VCFFAHSP+++R
Subjt:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR

Q6L4N4 Zinc finger CCCH domain-containing protein 35

9.7e-41

56.72

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Query:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
        MY +K++RC R RSHDWTECP+AH GEKA+RRDPRR+ Y+  ACP FR G C +GD CEFAHGVFE WLHPARYRT+ C  G  C+R+VCFFAH+P++LR
Subjt:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR

Query:  ---PETKHKFNLNAQRQRVAVAAVESPPEEKNDG
           P  +   N           A  SP  E  DG
Subjt:  ---PETKHKFNLNAQRQRVAVAAVESPPEEKNDG

Q9FU27 Zinc finger CCCH domain-containing protein 2

1.7e-40

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Query:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
        MY +K++RC R RSHDWTECP+AH GEKA+RRDPR+++Y+  ACP FR G C +GD CE+AHGVFE WLHPARYRT+ C  G  C+R+VCFFAH+P++LR
Subjt:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR

Q9M0G2 Zinc finger CCCH domain-containing protein 49

1.1e-41

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Query:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
        MY +K++RC R RSHDWTECPYAH GEKA+RRDPR+++Y+  ACP FR G C KGD CEFAHGVFE WLHPARYRT+ C  G  C RK+CFFAHSP++LR
Subjt:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR

Arabidopsis top hits

e value

%identity

Alignment

AT2G19810.1 CCCH-type zinc finger family protein

2.4e-42

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Query:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
        MY +K++RC R RSHDWTECPYAH GEKA+RRDPR+F+Y+  ACP FR G C +GD CEF+HGVFE WLHPARYRT+ C  G  C+R+VCFFAHSP+++R
Subjt:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR

AT2G25900.1 Zinc finger C-x8-C-x5-C-x3-H type family protein

2.6e-41

50.63

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Query:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
        +Y +KI+RC R RSHDWTECP+AH GEKA+RRDPR+F+Y+  ACP FR GSC +GD CEF+HGVFE WLHP+RYRT+ C  G  C+R++CFFAH+ E+LR
Subjt:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR

Query:  -------PETKHKFNLNAQRQRVAVAAVESPPEEK-----NDGILEIPARE---NGGG
               P+      L      + V+   SPP E      + G L    R+   NGGG
Subjt:  -------PETKHKFNLNAQRQRVAVAAVESPPEEK-----NDGILEIPARE---NGGG

AT2G25900.2 Zinc finger C-x8-C-x5-C-x3-H type family protein

2.6e-41

50.63

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Query:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
        +Y +KI+RC R RSHDWTECP+AH GEKA+RRDPR+F+Y+  ACP FR GSC +GD CEF+HGVFE WLHP+RYRT+ C  G  C+R++CFFAH+ E+LR
Subjt:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR

Query:  -------PETKHKFNLNAQRQRVAVAAVESPPEEK-----NDGILEIPARE---NGGG
               P+      L      + V+   SPP E      + G L    R+   NGGG
Subjt:  -------PETKHKFNLNAQRQRVAVAAVESPPEEK-----NDGILEIPARE---NGGG

AT4G29190.1 Zinc finger C-x8-C-x5-C-x3-H type family protein

8.1e-43

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Query:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
        MY +K++RC R RSHDWTECPYAH GEKA+RRDPR+++Y+  ACP FR G C KGD CEFAHGVFE WLHPARYRT+ C  G  C RK+CFFAHSP++LR
Subjt:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR

AT5G07500.1 Zinc finger C-x8-C-x5-C-x3-H type family protein

5.6e-52

81.31

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Query:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR
        MY+YKI+RCPR RSHDWTECPYAHRGEKA RRDPRR+ Y AVACPAFR+G+C +GD CEFAHGVFEYWLHPARYRTRACNAG  CQRKVCFFAH+PE+LR
Subjt:  MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR

Query:  -PETKHK
          E KH+
Subjt:  -PETKHK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTACTCTTACAAGATCCAACGGTGCCCAAGAAACCGCAGCCACGATTGGACGGAATGTCCGTATGCACACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTT
CAATTACACTGCTGTGGCCTGCCCGGCTTTTCGATCGGGGAGCTGTCCGAAGGGAGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTATTGGCTTCACCCGGCTCGGT
ACCGGACCCGGGCCTGTAATGCCGGCCGATTTTGTCAAAGGAAAGTTTGTTTTTTTGCTCACTCGCCGGAGGAACTCCGGCCTGAAACCAAACACAAGTTTAATTTGAAT
GCTCAACGGCAGCGTGTGGCGGTGGCTGCCGTTGAAAGTCCGCCGGAGGAAAAGAATGACGGAATTTTGGAAATCCCCGCGAGGGAGAACGGCGGTGGACGGAAAAATGA
ACGGAGTTTTGGATTTGATGTGTCGGAATTGGAGTTGCCGCATATTGAATGGATATCGGAATTGTTGAAGTAA

mRNA sequence

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Protein sequence

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MYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLN
AQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK

Cmc07g0201301 (gene) of Melon (Charmono) v1.1 genome