; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc07g0201461 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc07g0201461
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr07:23898074..23898680
RNA-Seq ExpressionCmc07g0201461
SyntenyCmc07g0201461
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032583.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-8590.8Show/hide
Query:  KSSVWDPVLFQ-KKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTNAPAT
        K+S   PVLFQ KKDGSLRLC D RALNKLTVRNKYPLPIITDLFD LHGAKYFSKLDL+SGYYQVRIAEGDEPKTTCVTRYG FEFLV+PFGLTNAPAT
Subjt:  KSSVWDPVLFQ-KKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTNAPAT

Query:  FCTLMNQVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVIKCG
        FCTLMNQVFHEYLDKFV+VYLDDIV+YSTTMEEHRDHLQKVFQKLKENQLY KREKCSFAQERINFL HVI+CG
Subjt:  FCTLMNQVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVIKCG

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-8492.86Show/hide
Query:  PVLFQ-KKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTNAPATFCTLMN
        PVLFQ KKDGSLRLC D RALNKLTVRNKYPLPIITDLFD LHGAKYFSKLDL+SGYYQVRIAEGDEPKTTCVTRYG FEFLV+PFGLTNAPATFCTLMN
Subjt:  PVLFQ-KKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTNAPATFCTLMN

Query:  QVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVIKCG
        QVFHEYLDKFV+VYLDDIV+YSTTMEEHRDHLQKVFQKLKENQLY KREKCSFAQERINFL HVI+CG
Subjt:  QVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVIKCG

KAA0040442.1 reverse transcriptase [Cucumis melo var. makuwa]3.8e-8588.2Show/hide
Query:  LIACKSSVWDPVLFQ-KKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTN
        ++  K+    PVLFQ KKDGSLRLC D RALNKLTVRNKYPLPIITDLFD LHGAKYFSKLDL+SGYYQVRIAEGDEPKTTCVTRYG FEFLV+PFGLTN
Subjt:  LIACKSSVWDPVLFQ-KKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTN

Query:  APATFCTLMNQVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVIKCG
        APATFCTLMNQVFHEYLDKFV+VYLDDIV+YSTTMEEHRDHLQKVFQKLKENQLY KREKCSFAQERINFL HVI+CG
Subjt:  APATFCTLMNQVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVIKCG

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-8492.86Show/hide
Query:  PVLFQ-KKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTNAPATFCTLMN
        PVLFQ KKDGSLRLC D RALNKLTVRNKYPLPIITDLFD LHGAKYFSKLDL+SGYYQVRIAEGDEPKTTCVTRYG FEFLV+PFGLTNAPATFCTLMN
Subjt:  PVLFQ-KKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTNAPATFCTLMN

Query:  QVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVIKCG
        QVFHEYLDKFV+VYLDDIV+YSTTMEEHRDHLQKVFQKLKENQLY KREKCSFAQERINFL HVI+CG
Subjt:  QVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVIKCG

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-8492.86Show/hide
Query:  PVLFQ-KKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTNAPATFCTLMN
        PVLFQ KKDGSLRLC D RALNKLTVRNKYPLPIITDLFD LHGAKYFSKLDL+SGYYQVRIAEGDEPKTTCVTRYG FEFLV+PFGLTNAPATFCTLMN
Subjt:  PVLFQ-KKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTNAPATFCTLMN

Query:  QVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVIKCG
        QVFHEYLDKFV+VYLDDIV+YSTTMEEHRDHLQKVFQKLKENQLY KREKCSFAQERINFL HVI+CG
Subjt:  QVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVIKCG

TrEMBL top hitse value%identityAlignment
A0A5A7SQC7 Reverse transcriptase8.2e-8690.8Show/hide
Query:  KSSVWDPVLFQ-KKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTNAPAT
        K+S   PVLFQ KKDGSLRLC D RALNKLTVRNKYPLPIITDLFD LHGAKYFSKLDL+SGYYQVRIAEGDEPKTTCVTRYG FEFLV+PFGLTNAPAT
Subjt:  KSSVWDPVLFQ-KKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTNAPAT

Query:  FCTLMNQVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVIKCG
        FCTLMNQVFHEYLDKFV+VYLDDIV+YSTTMEEHRDHLQKVFQKLKENQLY KREKCSFAQERINFL HVI+CG
Subjt:  FCTLMNQVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVIKCG

A0A5A7TAG9 Reverse transcriptase1.8e-8588.2Show/hide
Query:  LIACKSSVWDPVLFQ-KKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTN
        ++  K+    PVLFQ KKDGSLRLC D RALNKLTVRNKYPLPIITDLFD LHGAKYFSKLDL+SGYYQVRIAEGDEPKTTCVTRYG FEFLV+PFGLTN
Subjt:  LIACKSSVWDPVLFQ-KKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTN

Query:  APATFCTLMNQVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVIKCG
        APATFCTLMNQVFHEYLDKFV+VYLDDIV+YSTTMEEHRDHLQKVFQKLKENQLY KREKCSFAQERINFL HVI+CG
Subjt:  APATFCTLMNQVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVIKCG

A0A5A7UXR6 Reverse transcriptase5.3e-8592.86Show/hide
Query:  PVLFQ-KKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTNAPATFCTLMN
        PVLFQ KKDGSLRLC D RALNKLTVRNKYPLPIITDLFD LHGAKYFSKLDL+SGYYQVRIAEGDEPKTTCVTRYG FEFLV+PFGLTNAPATFCTLMN
Subjt:  PVLFQ-KKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTNAPATFCTLMN

Query:  QVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVIKCG
        QVFHEYLDKFV+VYLDDIV+YSTTMEEHRDHLQKVFQKLKENQLY KREKCSFAQERINFL HVI+CG
Subjt:  QVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVIKCG

A0A5D3BRZ6 Reverse transcriptase5.3e-8592.86Show/hide
Query:  PVLFQ-KKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTNAPATFCTLMN
        PVLFQ KKDGSLRLC D RALNKLTVRNKYPLPIITDLFD LHGAKYFSKLDL+SGYYQVRIAEGDEPKTTCVTRYG FEFLV+PFGLTNAPATFCTLMN
Subjt:  PVLFQ-KKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTNAPATFCTLMN

Query:  QVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVIKCG
        QVFHEYLDKFV+VYLDDIV+YSTTMEEHRDHLQKVFQKLKENQLY KREKCSFAQERINFL HVI+CG
Subjt:  QVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVIKCG

A0A5D3C4R1 Reverse transcriptase5.3e-8592.86Show/hide
Query:  PVLFQ-KKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTNAPATFCTLMN
        PVLFQ KKDGSLRLC D RALNKLTVRNKYPLPIITDLFD LHGAKYFSKLDL+SGYYQVRIAEGDEPKTTCVTRYG FEFLV+PFGLTNAPATFCTLMN
Subjt:  PVLFQ-KKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTNAPATFCTLMN

Query:  QVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVIKCG
        QVFHEYLDKFV+VYLDDIV+YSTTMEEHRDHLQKVFQKLKENQLY KREKCSFAQERINFL HVI+CG
Subjt:  QVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVIKCG

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein5.6e-3140.61Show/hide
Query:  PVLF-QKKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTNAPATFCTLMN
        PV+F  KK+G+LR+  D + LNK    N YPLP+I  L   + G+  F+KLDL+S Y+ +R+ +GDE K       G FE+LV+P+G++ APA F   +N
Subjt:  PVLF-QKKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTNAPATFCTLMN

Query:  QVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVI
         +  E  +  V+ Y+DDI+I+S +  EH  H++ V QKLK   L   + KC F Q ++ F+ + I
Subjt:  QVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVI

P0CT41 Transposon Tf2-12 polyprotein5.6e-3140.61Show/hide
Query:  PVLF-QKKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTNAPATFCTLMN
        PV+F  KK+G+LR+  D + LNK    N YPLP+I  L   + G+  F+KLDL+S Y+ +R+ +GDE K       G FE+LV+P+G++ APA F   +N
Subjt:  PVLF-QKKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTNAPATFCTLMN

Query:  QVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVI
         +  E  +  V+ Y+DDI+I+S +  EH  H++ V QKLK   L   + KC F Q ++ F+ + I
Subjt:  QVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVI

P31843 RNA-directed DNA polymerase homolog1.2e-4467.19Show/hide
Query:  SLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTNAPATFCTLMNQVFHEYLDKF
        SLR+C D RAL K+T++NKYP+P + DLFD L  A +F+KLDL+SGY+QVRIA+GDEPKTTCVTRYG+FEF V+PFGLTNA ATFC LMN V +EYLD F
Subjt:  SLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTNAPATFCTLMNQVFHEYLDKF

Query:  VMVYLDDIV---IYSTTMEEHRDHLQKV
        V+VYLDD+V   IYS ++ EH  HL+ V
Subjt:  VMVYLDDIV---IYSTTMEEHRDHLQKV

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein4.4e-3645.14Show/hide
Query:  LIACKSSVWDP-VLFQKKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTN
        ++  KS    P VL  KKDG+ RLC D R LNK T+ + +PLP I +L   +  A+ F+ LDL SGY+Q+ +   D  KT  VT  G +E+ V+PFGL N
Subjt:  LIACKSSVWDP-VLFQKKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTN

Query:  APATFCTLMNQVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVI
        AP+TF   M   F +   +FV VYLDDI+I+S + EEH  HL  V ++LK   L  K++KC FA E   FL + I
Subjt:  APATFCTLMNQVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVI

Q99315 Transposon Ty3-G Gag-Pol polyprotein4.4e-3645.14Show/hide
Query:  LIACKSSVWDP-VLFQKKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTN
        ++  KS    P VL  KKDG+ RLC D R LNK T+ + +PLP I +L   +  A+ F+ LDL SGY+Q+ +   D  KT  VT  G +E+ V+PFGL N
Subjt:  LIACKSSVWDP-VLFQKKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTN

Query:  APATFCTLMNQVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVI
        AP+TF   M   F +   +FV VYLDDI+I+S + EEH  HL  V ++LK   L  K++KC FA E   FL + I
Subjt:  APATFCTLMNQVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVI

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTATCGCTTGCAAAAGCTCCGTATGGGACCCAGTTCTTTTCCAGAAGAAGGATGGGAGTTTACGATTGTGCACCGATAATCGTGCCTTGAATAAGCTCACGGTTCG
CAACAAGTATCCACTTCCCATAATTACCGACTTGTTTGATCATTTACATGGAGCGAAGTATTTTTCGAAGTTGGACTTGCAATCAGGATACTACCAAGTGAGAATTGCAG
AGGGAGATGAGCCGAAGACAACCTGTGTCACCCGATATGGTACGTTCGAGTTCCTCGTAATACCATTTGGTCTTACTAATGCCCCTGCAACCTTTTGTACATTGATGAAC
CAGGTCTTCCATGAATATCTCGACAAATTCGTAATGGTCTACCTGGATGATATAGTGATCTATAGTACGACCATGGAGGAACATAGAGACCACCTGCAAAAGGTTTTTCA
GAAATTGAAGGAGAACCAACTGTATGCCAAAAGAGAAAAATGTTCCTTTGCACAAGAGCGGATAAACTTCTTGAGCCATGTGATAAAGTGTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTATCGCTTGCAAAAGCTCCGTATGGGACCCAGTTCTTTTCCAGAAGAAGGATGGGAGTTTACGATTGTGCACCGATAATCGTGCCTTGAATAAGCTCACGGTTCG
CAACAAGTATCCACTTCCCATAATTACCGACTTGTTTGATCATTTACATGGAGCGAAGTATTTTTCGAAGTTGGACTTGCAATCAGGATACTACCAAGTGAGAATTGCAG
AGGGAGATGAGCCGAAGACAACCTGTGTCACCCGATATGGTACGTTCGAGTTCCTCGTAATACCATTTGGTCTTACTAATGCCCCTGCAACCTTTTGTACATTGATGAAC
CAGGTCTTCCATGAATATCTCGACAAATTCGTAATGGTCTACCTGGATGATATAGTGATCTATAGTACGACCATGGAGGAACATAGAGACCACCTGCAAAAGGTTTTTCA
GAAATTGAAGGAGAACCAACTGTATGCCAAAAGAGAAAAATGTTCCTTTGCACAAGAGCGGATAAACTTCTTGAGCCATGTGATAAAGTGTGGCTGA
Protein sequenceShow/hide protein sequence
MLIACKSSVWDPVLFQKKDGSLRLCTDNRALNKLTVRNKYPLPIITDLFDHLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGTFEFLVIPFGLTNAPATFCTLMN
QVFHEYLDKFVMVYLDDIVIYSTTMEEHRDHLQKVFQKLKENQLYAKREKCSFAQERINFLSHVIKCG