; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc07g0201471 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc07g0201471
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr07:23908155..23909075
RNA-Seq ExpressionCmc07g0201471
SyntenyCmc07g0201471
Gene Ontology termsGO:0007034 - vacuolar transport (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005768 - endosome (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038243.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.3e-15998.57Show/hide
Query:  PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNG
        PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPV+EELFDELNG
Subjt:  PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNG

Query:  ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESEL
        ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVV+EILRESEL
Subjt:  ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESEL

Query:  YANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG
        YANFDKCHFAK+RISYLGHYISKKGIEVD EKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG
Subjt:  YANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG

KAA0049630.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.1e-15998.21Show/hide
Query:  PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNG
        PPQRGIEHHIYLKQGADP+NVRPYRYAHQQKEEMERLVDEML+SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPV+EELFDELNG
Subjt:  PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNG

Query:  ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESEL
        ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVV+EILRESEL
Subjt:  ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESEL

Query:  YANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG
        YANFDKCHFAKTRISYLGHYISKKGIEVD EKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG
Subjt:  YANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG

KAA0049776.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.3e-15998.57Show/hide
Query:  PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNG
        PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML+SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPV+EELFDELNG
Subjt:  PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNG

Query:  ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESEL
        ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVV+EILRESEL
Subjt:  ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESEL

Query:  YANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG
        YANFDKCHFAKTRISYLGHYISKKGIEVD EKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG
Subjt:  YANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG

TYK15990.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.3e-15998.57Show/hide
Query:  PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNG
        PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML+SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPV+EELFDELNG
Subjt:  PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNG

Query:  ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESEL
        ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVV+EILRESEL
Subjt:  ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESEL

Query:  YANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG
        YANFDKCHFAKTRISYLGHYISKKGIEVD EKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG
Subjt:  YANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG

TYK23090.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.3e-15998.57Show/hide
Query:  PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNG
        PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML+SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPV+EELFDELNG
Subjt:  PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNG

Query:  ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESEL
        ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVV+EILRESEL
Subjt:  ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESEL

Query:  YANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG
        YANFDKCHFAKTRISYLGHYISKKGIEVD EKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG
Subjt:  YANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG

TrEMBL top hitse value%identityAlignment
A0A5A7T5N7 Ty3/gypsy retrotransposon protein1.1e-15998.57Show/hide
Query:  PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNG
        PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPV+EELFDELNG
Subjt:  PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNG

Query:  ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESEL
        ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVV+EILRESEL
Subjt:  ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESEL

Query:  YANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG
        YANFDKCHFAK+RISYLGHYISKKGIEVD EKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG
Subjt:  YANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG

A0A5A7U2S1 Ty3/gypsy retrotransposon protein1.5e-15998.21Show/hide
Query:  PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNG
        PPQRGIEHHIYLKQGADP+NVRPYRYAHQQKEEMERLVDEML+SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPV+EELFDELNG
Subjt:  PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNG

Query:  ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESEL
        ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVV+EILRESEL
Subjt:  ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESEL

Query:  YANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG
        YANFDKCHFAKTRISYLGHYISKKGIEVD EKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG
Subjt:  YANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG

A0A5A7U6J3 Ty3/gypsy retrotransposon protein1.1e-15998.57Show/hide
Query:  PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNG
        PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML+SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPV+EELFDELNG
Subjt:  PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNG

Query:  ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESEL
        ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVV+EILRESEL
Subjt:  ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESEL

Query:  YANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG
        YANFDKCHFAKTRISYLGHYISKKGIEVD EKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG
Subjt:  YANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG

A0A5D3CXB1 Ty3/gypsy retrotransposon protein1.1e-15998.57Show/hide
Query:  PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNG
        PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML+SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPV+EELFDELNG
Subjt:  PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNG

Query:  ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESEL
        ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVV+EILRESEL
Subjt:  ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESEL

Query:  YANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG
        YANFDKCHFAKTRISYLGHYISKKGIEVD EKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG
Subjt:  YANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG

A0A5D3DI73 Ty3/gypsy retrotransposon protein1.1e-15998.57Show/hide
Query:  PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNG
        PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEML+SGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPV+EELFDELNG
Subjt:  PPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNG

Query:  ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESEL
        ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVV+EILRESEL
Subjt:  ADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESEL

Query:  YANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG
        YANFDKCHFAKTRISYLGHYISKKGIEVD EKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG
Subjt:  YANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSG

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.64.9e-6744.79Show/hide
Query:  YRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGS-----WRFCVDYRALNNVTVPDKFPIPVMEELFDELNGADVFSKIDLKAGYHQIRM
        Y Y    ++E+E  + +ML  GIIR S SPY+SP+ +V KK  +     +R  +DYR LN +TV D+ PIP M+E+  +L   + F+ IDL  G+HQI M
Subjt:  YRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGS-----WRFCVDYRALNNVTVPDKFPIPVMEELFDELNGADVFSKIDLKAGYHQIRM

Query:  HPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESELYANFDKCHFAKTRISYLG
         PE + KTAF T  GHYE++ MPFGL NAP+TFQ  MN + +P L +  LV+ DDI+++S  ++EH Q L +V E L ++ L    DKC F K   ++LG
Subjt:  HPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESELYANFDKCHFAKTRISYLG

Query:  HYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLK
        H ++  GI+ + EKI A++++P P   +E++ FLGLTGYYR+F+ N+  I+ P+T+ LK
Subjt:  HYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLK

P20825 Retrovirus-related Pol polyprotein from transposon 2979.2e-6642.7Show/hide
Query:  HIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKD-----GSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNGADV
        H+       P+  + Y  A   + E+E  V EML  G+IR S SPY+SP  +V KK        +R  +DYR LN +T+PD++PIP M+E+  +L     
Subjt:  HIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKD-----GSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNGADV

Query:  FSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESELYAN
        F+ IDL  G+HQI M  E I KTAF T  GHYE++ MPFGL NAP+TFQ  MN + +P L +  LV+ DDI+I+S  + EH   +++V   L ++ L   
Subjt:  FSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESELYAN

Query:  FDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLK
         DKC F K   ++LGH ++  GI+ +  K++A+  +P P   +E+R FLGLTGYYR+F+ NY  I+ P+T  LK
Subjt:  FDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLK

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.9e-6342.2Show/hide
Query:  QTDFPPQRG------IEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPV
        + D PP+        ++H I +K GA    ++PY    + ++E+ ++V ++L +  I PS SP SSPV+LV KKDG++R CVDYR LN  T+ D FP+P 
Subjt:  QTDFPPQRG------IEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPV

Query:  MEELFDELNGADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEV
        ++ L   +  A +F+ +DL +GYHQI M P+D  KTAF T  G YE+ VMPFGL NAPSTF   M   F+    RFV V+ DDILI+S+  EEH +HL+ 
Subjt:  MEELFDELNGADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEV

Query:  VMEILRESELYANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPL
        V+E L+   L     KC FA     +LG+ I  + I     K  A++++P P  V++ + FLG+  YYRRF+ N   I+ P+
Subjt:  VMEILRESELYANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus3.0e-6440.57Show/hide
Query:  DPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKK-----DGSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNGADVFSKIDLKA
        DP+  + Y Y    + E+ER +DE+L  GIIRPS SPY+SP+ +V KK     +  +R  VD++ LN VT+PD +PIP +      L  A  F+ +DL +
Subjt:  DPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKK-----DGSWRFCVDYRALNNVTVPDKFPIPVMEELFDELNGADVFSKIDLKA

Query:  GYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESELYANFDKCHFAK
        G+HQI M   DI KTAF T  G YEF+ +PFGL NAP+ FQ +++ + +  + +   V+ DDI+++S+  + H ++L +V+  L ++ L  N +K HF  
Subjt:  GYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESELYANFDKCHFAK

Query:  TRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGGISGQKKQRQHSK
        T++ +LG+ ++  GI+ D +K+RA+ E P P +V+EL+ FLG+T YYR+F+Q+Y  ++ PLT L +  G+    K  Q SK
Subjt:  TRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGGISGQKKQRQHSK

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.9e-6342.2Show/hide
Query:  QTDFPPQRG------IEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPV
        + D PP+        ++H I +K GA    ++PY    + ++E+ ++V ++L +  I PS SP SSPV+LV KKDG++R CVDYR LN  T+ D FP+P 
Subjt:  QTDFPPQRG------IEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPV

Query:  MEELFDELNGADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEV
        ++ L   +  A +F+ +DL +GYHQI M P+D  KTAF T  G YE+ VMPFGL NAPSTF   M   F+    RFV V+ DDILI+S+  EEH +HL+ 
Subjt:  MEELFDELNGADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEV

Query:  VMEILRESELYANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPL
        V+E L+   L     KC FA     +LG+ I  + I     K  A++++P P  V++ + FLG+  YYRRF+ N   I+ P+
Subjt:  VMEILRESELYANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPL

Arabidopsis top hitse value%identityAlignment
ATMG00850.1 DNA/RNA polymerases superfamily protein2.9e-0656.41Show/hide
Query:  QKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSW
        ++  ++  + EML + II+PS SPYSSPVLLV+KKDG W
Subjt:  QKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSW

ATMG00860.1 DNA/RNA polymerases superfamily protein5.2e-2452.58Show/hide
Query:  HLEVVMEILRESELYANFDKCHFAKTRISYLG--HYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGGI
        HL +V++I  + + YAN  KC F + +I+YLG  H IS +G+  D  K+ A+  WP P N  ELRGFLGLTGYYRRFV+NYG I  PLT+LLK   +
Subjt:  HLEVVMEILRESELYANFDKCHFAKTRISYLG--HYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGGI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTCGAACGACCAAACAGACTTCCCCCCCCAACGAGGAATAGAGCATCATATATACCTAAAACAAGGAGCCGATCCAGTCAATGTTAGACCCTACCGGTAC
GCACACCAACAGAAAGAGGAGATGGAGAGATTGGTGGACGAGATGCTCACGTCGGGAATTATCAGGCCAAGCACCAGCCCATACTCCAGCCCAGTGTTGTTAGTA
AGAAAGAAGGATGGAAGTTGGAGATTCTGTGTAGATTACAGGGCATTGAACAATGTGACAGTGCCGGACAAATTCCCAATTCCAGTCATGGAGGAGCTCTTTGAT
GAATTGAATGGGGCAGATGTCTTTTCCAAGATCGACCTCAAAGCTGGGTACCACCAAATTCGGATGCACCCCGAAGATATCGAGAAGACAGCTTTCCGAACCCAC
GAGGGGCATTATGAGTTCATGGTAATGCCGTTCGGCCTCACCAACGCCCCTTCAACCTTCCAAGCTTTGATGAATCAGGTATTCAAGCCCTTCTTAAGACGATTT
GTACTTGTTTTCTTCGACGATATATTGATTTACAGCAAGGGAATGGAGGAACACGGACAACACCTTGAAGTGGTGATGGAAATTTTGAGAGAAAGCGAGTTATAT
GCCAACTTCGACAAATGTCATTTTGCCAAGACAAGGATCAGCTACCTGGGGCATTACATTTCGAAGAAGGGTATTGAGGTGGATTCCGAAAAGATTCGCGCAGTA
AAGGAGTGGCCAGCACCTGCGAATGTAAGGGAGTTGAGAGGATTCCTGGGGCTTACCGGCTACTACCGCCGCTTTGTGCAAAACTATGGAAGTATATCGGCACCT
CTAACACAGCTGTTGAAATCAGGGGGTATAAGTGGACAGAAGAAACAGAGGCAGCATTCGAAAAACTCAAGAAAGCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTTCGAACGACCAAACAGACTTCCCCCCCCAACGAGGAATAGAGCATCATATATACCTAAAACAAGGAGCCGATCCAGTCAATGTTAGACCCTACCGGTAC
GCACACCAACAGAAAGAGGAGATGGAGAGATTGGTGGACGAGATGCTCACGTCGGGAATTATCAGGCCAAGCACCAGCCCATACTCCAGCCCAGTGTTGTTAGTA
AGAAAGAAGGATGGAAGTTGGAGATTCTGTGTAGATTACAGGGCATTGAACAATGTGACAGTGCCGGACAAATTCCCAATTCCAGTCATGGAGGAGCTCTTTGAT
GAATTGAATGGGGCAGATGTCTTTTCCAAGATCGACCTCAAAGCTGGGTACCACCAAATTCGGATGCACCCCGAAGATATCGAGAAGACAGCTTTCCGAACCCAC
GAGGGGCATTATGAGTTCATGGTAATGCCGTTCGGCCTCACCAACGCCCCTTCAACCTTCCAAGCTTTGATGAATCAGGTATTCAAGCCCTTCTTAAGACGATTT
GTACTTGTTTTCTTCGACGATATATTGATTTACAGCAAGGGAATGGAGGAACACGGACAACACCTTGAAGTGGTGATGGAAATTTTGAGAGAAAGCGAGTTATAT
GCCAACTTCGACAAATGTCATTTTGCCAAGACAAGGATCAGCTACCTGGGGCATTACATTTCGAAGAAGGGTATTGAGGTGGATTCCGAAAAGATTCGCGCAGTA
AAGGAGTGGCCAGCACCTGCGAATGTAAGGGAGTTGAGAGGATTCCTGGGGCTTACCGGCTACTACCGCCGCTTTGTGCAAAACTATGGAAGTATATCGGCACCT
CTAACACAGCTGTTGAAATCAGGGGGTATAAGTGGACAGAAGAAACAGAGGCAGCATTCGAAAAACTCAAGAAAGCCATGA
Protein sequenceShow/hide protein sequence
MCSNDQTDFPPQRGIEHHIYLKQGADPVNVRPYRYAHQQKEEMERLVDEMLTSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVMEELFD
ELNGADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVMEILRESELY
ANFDKCHFAKTRISYLGHYISKKGIEVDSEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGGISGQKKQRQHSKNSRKP