; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0213151 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0213151
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionU1 small nuclear ribonucleoprotein A isoform X2
Genome locationCMiso1.1chr08:3768774..3775099
RNA-Seq ExpressionCmc08g0213151
SyntenyCmc08g0213151
Gene Ontology termsGO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK12872.1 U1 small nuclear ribonucleoprotein A isoform X2 [Cucumis melo var. makuwa]6.1e-17198.38Show/hide
Query:  MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR
        MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR
Subjt:  MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR

Query:  TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAYNTIGYP
        TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAYNTIGYP
Subjt:  TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAYNTIGYP

Query:  SAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEGM
        SAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEGM
Subjt:  SAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEGM

Query:  RLEYAKSR
        RL+  ++R
Subjt:  RLEYAKSR

XP_008440306.2 PREDICTED: protein WHI4 isoform X2 [Cucumis melo]4.0e-178100Show/hide
Query:  MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR
        MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR
Subjt:  MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR

Query:  TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAYNTIGYP
        TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAYNTIGYP
Subjt:  TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAYNTIGYP

Query:  SAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEGM
        SAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEGM
Subjt:  SAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEGM

Query:  RLEYAKSRMGMRKKPK
        RLEYAKSRMGMRKKPK
Subjt:  RLEYAKSRMGMRKKPK

XP_011657875.1 U1 small nuclear ribonucleoprotein A isoform X1 [Cucumis sativus]1.7e-17398.11Show/hide
Query:  MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR
        MDDMTSYYPPPQPPPQPSGLEP HYPYYQVPPPPSAPPSQHYLSQHP TFASY LPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR
Subjt:  MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR

Query:  TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDP-GLGSTHMSGMGNSAYNTIGY
        TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTE+ERYGSDKKAKVSII RSTPDP GLGSTHMSGMGNSAYNTIGY
Subjt:  TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDP-GLGSTHMSGMGNSAYNTIGY

Query:  PSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG
        PSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG
Subjt:  PSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG

Query:  MRLEYAKSRMGMRKKPK
        MRLEYAKSRMGMRKKPK
Subjt:  MRLEYAKSRMGMRKKPK

XP_011657876.1 U1 small nuclear ribonucleoprotein A isoform X2 [Cucumis sativus]7.0e-17598.42Show/hide
Query:  MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR
        MDDMTSYYPPPQPPPQPSGLEP HYPYYQVPPPPSAPPSQHYLSQHP TFASY LPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR
Subjt:  MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR

Query:  TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAYNTIGYP
        TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTE+ERYGSDKKAKVSII RSTPDPGLGSTHMSGMGNSAYNTIGYP
Subjt:  TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAYNTIGYP

Query:  SAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEGM
        SAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEGM
Subjt:  SAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEGM

Query:  RLEYAKSRMGMRKKPK
        RLEYAKSRMGMRKKPK
Subjt:  RLEYAKSRMGMRKKPK

XP_016899375.1 PREDICTED: U1 small nuclear ribonucleoprotein A isoform X1 [Cucumis melo]9.8e-17799.68Show/hide
Query:  MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR
        MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR
Subjt:  MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR

Query:  TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDP-GLGSTHMSGMGNSAYNTIGY
        TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDP GLGSTHMSGMGNSAYNTIGY
Subjt:  TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDP-GLGSTHMSGMGNSAYNTIGY

Query:  PSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG
        PSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG
Subjt:  PSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG

Query:  MRLEYAKSRMGMRKKPK
        MRLEYAKSRMGMRKKPK
Subjt:  MRLEYAKSRMGMRKKPK

TrEMBL top hitse value%identityAlignment
A0A0A0KLD8 Uncharacterized protein8.4e-17498.11Show/hide
Query:  MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR
        MDDMTSYYPPPQPPPQPSGLEP HYPYYQVPPPPSAPPSQHYLSQHP TFASY LPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR
Subjt:  MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR

Query:  TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDP-GLGSTHMSGMGNSAYNTIGY
        TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTE+ERYGSDKKAKVSII RSTPDP GLGSTHMSGMGNSAYNTIGY
Subjt:  TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDP-GLGSTHMSGMGNSAYNTIGY

Query:  PSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG
        PSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG
Subjt:  PSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG

Query:  MRLEYAKSRMGMRKKPK
        MRLEYAKSRMGMRKKPK
Subjt:  MRLEYAKSRMGMRKKPK

A0A1S3B1E9 protein WHI4 isoform X21.9e-178100Show/hide
Query:  MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR
        MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR
Subjt:  MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR

Query:  TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAYNTIGYP
        TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAYNTIGYP
Subjt:  TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAYNTIGYP

Query:  SAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEGM
        SAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEGM
Subjt:  SAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEGM

Query:  RLEYAKSRMGMRKKPK
        RLEYAKSRMGMRKKPK
Subjt:  RLEYAKSRMGMRKKPK

A0A1S4DUH9 U1 small nuclear ribonucleoprotein A isoform X14.7e-17799.68Show/hide
Query:  MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR
        MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR
Subjt:  MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR

Query:  TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDP-GLGSTHMSGMGNSAYNTIGY
        TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDP GLGSTHMSGMGNSAYNTIGY
Subjt:  TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDP-GLGSTHMSGMGNSAYNTIGY

Query:  PSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG
        PSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG
Subjt:  PSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG

Query:  MRLEYAKSRMGMRKKPK
        MRLEYAKSRMGMRKKPK
Subjt:  MRLEYAKSRMGMRKKPK

A0A5D3CNE3 U1 small nuclear ribonucleoprotein A isoform X23.0e-17198.38Show/hide
Query:  MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR
        MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR
Subjt:  MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR

Query:  TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAYNTIGYP
        TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAYNTIGYP
Subjt:  TPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAYNTIGYP

Query:  SAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEGM
        SAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEGM
Subjt:  SAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEGM

Query:  RLEYAKSR
        RL+  ++R
Subjt:  RLEYAKSR

A0A6J1GD02 protein WHI4 isoform X21.0e-16393.12Show/hide
Query:  MDDMTSYY---PPPQPPPQPSGLEPSHYPYYQVPPPP-SAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYES
        MDD+TSYY   P PQPP QPSGLE  HYPYYQVPPPP SAP SQHYL+QHPPTFASYGLP LPH  SINEVRTLFIAGLP+DVKPREIYNLFREFPGYES
Subjt:  MDDMTSYY---PPPQPPPQPSGLEPSHYPYYQVPPPP-SAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYES

Query:  SHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAYNT
        SHLR+PTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSI SRSTPDPGLGSTHMSGMGNSAYNT
Subjt:  SHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAYNT

Query:  IGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPP
        IGYPSAQSHGSFD+KTVNDTVAANV PQNPPCPTLFVANLGP CTEQELIQIF RCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPP
Subjt:  IGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPP

Query:  GEGMRLEYAKSRMGMRKKPK
        GEGMRLEYAKSRMGMRKK K
Subjt:  GEGMRLEYAKSRMGMRKKPK

SwissProt top hitse value%identityAlignment
Q6DH13 RNA-binding protein, mRNA-processing factor 2a3.8e-1443.33Show/hide
Query:  EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTR
        EVRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F  +  A  A +A+NG+ FD E    L ++ AK+N++  +++
Subjt:  EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTR

Q6ZRY4 RNA-binding protein with multiple splicing 22.9e-1443.33Show/hide
Query:  EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTR
        EVRTLF++GLP D+KPRE+Y LFR F GYE S ++   +  QP  F +F  +  A  A +A+NG+ FD E    L ++ AK+N++  +++
Subjt:  EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTR

Q8VC52 RNA-binding protein with multiple splicing 22.2e-1443.33Show/hide
Query:  EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTR
        EVRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F +F  +  A  A +A+NG+ FD E    L ++ AK+N++  +++
Subjt:  EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTR

Q9W6I1 RNA-binding protein with multiple splicing 24.9e-1443.33Show/hide
Query:  EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTR
        EVRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F  +  A  A +A+NG+ FD E    L ++ AK+N++  +++
Subjt:  EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTR

Q9YGP5 RNA-binding protein with multiple splicing 26.5e-1443.33Show/hide
Query:  EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTR
        EVRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F ++  A  A +A+NG+ FD E    L ++ AK+N++  + +
Subjt:  EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTR

Arabidopsis top hitse value%identityAlignment
AT2G42240.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.3e-8156.25Show/hide
Query:  MDDMTSYYPPPQPPPQPSGLEPSHY--PYYQVPPPPSAPP----SQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGY
        MDD+ +YY              SHY  P    PPPP   P    S H  S + PT  S G        + +EVRTLF+AGLPEDVKPREIYNLFREFPGY
Subjt:  MDDMTSYYPPPQPPPQPSGLEPSHY--PYYQVPPPPSAPP----SQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGY

Query:  ESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAY
        E+SHLR+ +   +PFAFAVFSD QSAV  MHA+NGMVFDLEK S L++DLAKSN +SKR+RT D+ + S KK K      +T + G GS    GM +SAY
Subjt:  ESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAY

Query:  NTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSS
        NTIGY  AQS G   N       +        PCPTLF+AN+GP CTE ELIQ+F RC GFLKLK+Q TYG PVAFVDFQD +CS+ AL+ LQG++LYSS
Subjt:  NTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSS

Query:  PPGEGMRLEYAKSRMGMRKK
          GE +RL+YA+SRMGMRKK
Subjt:  PPGEGMRLEYAKSRMGMRKK

AT2G42240.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-7655.16Show/hide
Query:  MDDMTSYYPPPQPPPQPSGLEPSHY--PYYQVPPPPSAPP----SQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGY
        MDD+ +YY              SHY  P    PPPP   P    S H  S + PT  S G        + +EVRTLF+AGLPEDVKPREIYNLFREFPGY
Subjt:  MDDMTSYYPPPQPPPQPSGLEPSHY--PYYQVPPPPSAPP----SQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGY

Query:  ESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAY
        E+SHLR+ +   +PFAFAVFSD QSAV  MHA+NGMVFDLEK S L++DLAKSN +SKR+RT D+ + S KK K      +T + G GS    GM +SAY
Subjt:  ESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAY

Query:  NTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSS
        NTIGY  AQS G   N       +        PCPTLF+AN+GP CTE ELIQ+F RC GFLKLK+Q TYG PVAFVDFQD +CS+ AL+ LQG++LYSS
Subjt:  NTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSS

Query:  PPGEGMRLEY
          GE +RL+Y
Subjt:  PPGEGMRLEY

AT2G42240.3 RNA-binding (RRM/RBD/RNP motifs) family protein1.7e-7855.62Show/hide
Query:  MDDMTSYYPPPQPPPQPSGLEPSHY--PYYQVPPPPSAPP----SQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGY
        MDD+ +YY              SHY  P    PPPP   P    S H  S + PT  S G        + +EVRTLF+AGLPEDVKPREIYNLFREFPGY
Subjt:  MDDMTSYYPPPQPPPQPSGLEPSHY--PYYQVPPPPSAPP----SQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGY

Query:  ESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAY
        E+SHLR+ +   +PFAFAVFSD QSAV  MHA+NGMVFDLEK S L++DLAKSN +SKR+RT D+ + S KK K      +T + G GS    GM +SAY
Subjt:  ESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAY

Query:  NTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSS
        NTIGY  AQS G   N       +        PCPTLF+AN+GP CTE ELIQ+F RC GFLKLK+Q TYG PVAFVDFQD +CS+ AL+ LQG++LYSS
Subjt:  NTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSS

Query:  PPGEGMRLEYAKSRMGMRKK
          GE +RL+   SRMGMRKK
Subjt:  PPGEGMRLEYAKSRMGMRKK

AT3G13700.2 RNA-binding (RRM/RBD/RNP motifs) family protein2.5e-3737.71Show/hide
Query:  PSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFD
        P  P   + L  HP       LPLL        + TLF++GLP DVK REI+NLFR   G+ES  L+   +  Q  AFA F+  + A+ AM+ +NG+ FD
Subjt:  PSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFD

Query:  LEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTV--AANVIPQNP-----
         +  S L+++LA+SNSR K      ER GS       +I     +        S  G+S  + +     Q  G+ D+   NDT    A+  P +      
Subjt:  LEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTV--AANVIPQNP-----

Query:  --------------PCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEGMRLEYAKSRM
                       C TLF+ANLGP CTE EL Q+  R PGF  LK+++  G PVAF DF++   +T A+NHLQG++L SS  G GM +EYA+S+M
Subjt:  --------------PCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEGMRLEYAKSRM

AT3G21215.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.6e-3132.83Show/hide
Query:  SGLEPSH--YPYYQVPPPP-----SAPPSQHYLSQHPPTFASYGLPLL---PHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQ
        +G+ P H  +P    PPPP     +APP    +  HPP       P+L    +    +E+RT+FIAGLP+DVK RE+ NL R  PGYE+S +    +  +
Subjt:  SGLEPSH--YPYYQVPPPP-----SAPPSQHYLSQHPPTFASYGLPLL---PHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQ

Query:  PFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDER-YGSDKKAKV------SIISRS----TPDPGLGSTHMSGMGNSAYNT
        P  FA+FS  Q A+ A   +  MVFD E +SV++ ++AK N   KR    D   Y   K+ +       S+ S S     P P  G  H        Y  
Subjt:  PFAFAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDER-YGSDKKAKV------SIISRS----TPDPGLGSTHMSGMGNSAYNT

Query:  IGYPSAQSHGSFDNKTV-----------NDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNH
           P    +  +    V           +  V    I  NPPC TLF+ NLG    E+EL  +    PGF ++K+       V F++F+D   +T   ++
Subjt:  IGYPSAQSHGSFDNKTV-----------NDTVAANVIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNH

Query:  LQGSILYSSPPGEGMRLEYAKSRMGMRKK
        LQG+++ SS    GMR++Y+K+  G RK+
Subjt:  LQGSILYSSPPGEGMRLEYAKSRMGMRKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGACATGACGAGCTACTATCCGCCACCGCAACCACCGCCGCAGCCTTCTGGTCTTGAACCTTCTCACTATCCCTATTACCAGGTGCCTCCTCCTCCTTCAGCACC
GCCGTCTCAGCATTACCTCTCTCAACACCCGCCCACCTTCGCTTCTTATGGCTTACCTCTTTTACCTCACACAACCTCCATCAATGAGGTCCGTACCCTATTCATAGCTG
GTCTTCCTGAAGATGTCAAGCCCCGAGAAATTTACAATCTCTTCCGGGAGTTTCCGGGATACGAGTCCTCTCATCTTCGGACTCCCACGCAGACGACCCAGCCATTTGCA
TTTGCTGTATTCTCAGACCAGCAGTCTGCCGTTGGTGCAATGCATGCTGTAAATGGCATGGTGTTTGATCTCGAGAAGCAGTCAGTACTGTATGTTGACTTGGCTAAATC
TAATTCAAGATCAAAACGGACGAGGACAGAGGATGAAAGATATGGATCAGATAAGAAAGCTAAAGTATCTATCATTTCAAGGAGTACTCCTGATCCTGGTCTTGGCAGCA
CTCACATGTCTGGAATGGGTAATTCTGCTTACAACACGATTGGTTATCCATCTGCACAAAGCCATGGAAGCTTTGATAACAAAACTGTAAACGATACAGTGGCTGCAAAT
GTGATTCCTCAAAATCCCCCATGTCCAACACTTTTTGTGGCAAATCTAGGACCAGGTTGCACCGAACAAGAGCTTATTCAAATTTTTTTGAGATGCCCAGGATTCTTAAA
ACTTAAAATGCAGAGCACGTATGGAGCCCCAGTTGCTTTTGTTGATTTTCAGGATACGGCCTGTTCAACCGGAGCTCTGAACCATCTGCAAGGCTCAATTCTGTACTCAT
CACCTCCTGGGGAGGGCATGCGATTGGAATACGCAAAATCAAGAATGGGTATGCGGAAGAAACCGAAATGA
mRNA sequenceShow/hide mRNA sequence
GTTTAATTGTGAGCCCATTTGAGTTTTGAGGGACAATGGTTTTATCACAATCGAAGCAATCCGACCCAAAATTCGGGGCTACCAGCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTACTTGGTCAGAGACTCGGAGGGAAAAGCACTCCGATGGACGACATGACGAGCTACTATCCGCCACCGCAACCACCGCCGCAGCCTTCTGGTCTTGAACCTT
CTCACTATCCCTATTACCAGGTGCCTCCTCCTCCTTCAGCACCGCCGTCTCAGCATTACCTCTCTCAACACCCGCCCACCTTCGCTTCTTATGGCTTACCTCTTTTACCT
CACACAACCTCCATCAATGAGGTCCGTACCCTATTCATAGCTGGTCTTCCTGAAGATGTCAAGCCCCGAGAAATTTACAATCTCTTCCGGGAGTTTCCGGGATACGAGTC
CTCTCATCTTCGGACTCCCACGCAGACGACCCAGCCATTTGCATTTGCTGTATTCTCAGACCAGCAGTCTGCCGTTGGTGCAATGCATGCTGTAAATGGCATGGTGTTTG
ATCTCGAGAAGCAGTCAGTACTGTATGTTGACTTGGCTAAATCTAATTCAAGATCAAAACGGACGAGGACAGAGGATGAAAGATATGGATCAGATAAGAAAGCTAAAGTA
TCTATCATTTCAAGGAGTACTCCTGATCCTGGTCTTGGCAGCACTCACATGTCTGGAATGGGTAATTCTGCTTACAACACGATTGGTTATCCATCTGCACAAAGCCATGG
AAGCTTTGATAACAAAACTGTAAACGATACAGTGGCTGCAAATGTGATTCCTCAAAATCCCCCATGTCCAACACTTTTTGTGGCAAATCTAGGACCAGGTTGCACCGAAC
AAGAGCTTATTCAAATTTTTTTGAGATGCCCAGGATTCTTAAAACTTAAAATGCAGAGCACGTATGGAGCCCCAGTTGCTTTTGTTGATTTTCAGGATACGGCCTGTTCA
ACCGGAGCTCTGAACCATCTGCAAGGCTCAATTCTGTACTCATCACCTCCTGGGGAGGGCATGCGATTGGAATACGCAAAATCAAGAATGGGTATGCGGAAGAAACCGAA
ATGATTAAAGACAATTCTTGCAGTCAGGAAGAAAATAGAGAGCCCTCAGGCCATGTGCCTACAATGGTTTATGAAGGTCAGAGGTAGTGCCTTACTTGTACTCTTATGTA
GATGAGGAAATTAACAACATATACCATTCCCATATTTTTTTTCATTGTATCAAATGCTGCCTTCTCAGTCTTAAAACTTCAAATTCATTTTATATCTTCAGAACCCCATT
AGTTCTATACATTTATTACTCATAAAGAGTATCTTTTCCACTACATGTCCAGAAAAAAAAAAAAAAAAAAAGTAGCTTCCTTTGGAGCCGGTTAACGTAGATCCGTTTGG
ATACCGTATTGTAATATGGTCAACCCAACAAATGAACTGTTTTTTTTTTCTTTTTTGGTGGTAAATTCAGTTT
Protein sequenceShow/hide protein sequence
MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFA
FAVFSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIISRSTPDPGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAAN
VIPQNPPCPTLFVANLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEGMRLEYAKSRMGMRKKPK