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Cmc08g0214341 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0214341
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTubulin alpha-1B chain
Genome locationCMiso1.1chr08:4516236..4516909
RNA-Seq ExpressionCmc08g0214341
SyntenyCmc08g0214341
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH09729.1 hypothetical protein Prudu_022311 [Prunus dulcis]4.5e-2551.89Show/hide
Query:  MHKSPLCVHEIKFVVNAGEDLCDTCGVGDHAYSSLNLGQIPAWYNSRWLVIDTTLESCWAPVNKLDGSFGFNGSHRCVDILWNHISSVHQTTGHVFSMAG
        +HK  L +H++K VVN+GE L +   VGDHA+S LNLG++ +W NS WLV+DT LES  APV KL+G+ G +G +  + IL ++I++VH+   HVF++A 
Subjt:  MHKSPLCVHEIKFVVNAGEDLCDTCGVGDHAYSSLNLGQIPAWYNSRWLVIDTTLESCWAPVNKLDGSFGFNGSHRCVDILWNHISSVHQTTGHVFSMAG

Query:  VTLGHH
        VTLGHH
Subjt:  VTLGHH

GER37418.1 P-loop containing nucleoside triphosphatehydrolases superfamily protein, partial [Striga asiatica]6.5e-2450.47Show/hide
Query:  MHKSPLCVHEIKFVVNAGEDLCDTCGVGDHAYSSLNLGQIPAWYNSRWLVIDTTLESCWAPVNKLDGSFGFNGSHRCVDILWNHISSVHQTTGHVFSMAG
        +HK PL +H++K VVN  E L +T  V  HA+  L+L Q+    +S WLV+D  LES  APV+KL+G+FGF+  H C++ILW+HI+SVH+   HV SM+ 
Subjt:  MHKSPLCVHEIKFVVNAGEDLCDTCGVGDHAYSSLNLGQIPAWYNSRWLVIDTTLESCWAPVNKLDGSFGFNGSHRCVDILWNHISSVHQTTGHVFSMAG

Query:  VTLGHHG
        VT  HHG
Subjt:  VTLGHHG

GIL42644.1 hypothetical protein Vafri_593 [Volvox africanus]2.7e-2248.11Show/hide
Query:  MHKSPLCVHEIKFVVNAGEDLCDTCGVGDHAYSSLNLGQIPAWYNSRWLVIDTTLESCWAPVNKLDGSFGFNGSHRCVDILWNHISSVHQTTGHVFSMAG
        +H+  L VH+I+ +V A EDL D   VGDHA  +L+LGQ+  W NS WLV+D  LE+ WAPV++LDG+   NG H  V +L + I++VHQ   HV ++  
Subjt:  MHKSPLCVHEIKFVVNAGEDLCDTCGVGDHAYSSLNLGQIPAWYNSRWLVIDTTLESCWAPVNKLDGSFGFNGSHRCVDILWNHISSVHQTTGHVFSMAG

Query:  VTLGHH
        V L HH
Subjt:  VTLGHH

GIL73334.1 hypothetical protein Vretifemale_3527, partial [Volvox reticuliferus]2.1e-2247.17Show/hide
Query:  MHKSPLCVHEIKFVVNAGEDLCDTCGVGDHAYSSLNLGQIPAWYNSRWLVIDTTLESCWAPVNKLDGSFGFNGSHRCVDILWNHISSVHQTTGHVFSMAG
        +H+  L +H+I+ VV A EDL ++  VGDHA  +L+LGQI  W+N   LV+D  L++  APV++L+G+   +G H  VD+LW+HI++VHQ  GHV ++A 
Subjt:  MHKSPLCVHEIKFVVNAGEDLCDTCGVGDHAYSSLNLGQIPAWYNSRWLVIDTTLESCWAPVNKLDGSFGFNGSHRCVDILWNHISSVHQTTGHVFSMAG

Query:  VTLGHH
        V L HH
Subjt:  VTLGHH

KAF1768815.1 hypothetical protein GCK72_000628 [Caenorhabditis remanei]3.8e-2454Show/hide
Query:  LCVHEIKFVVNAGEDLCDTCGVGDHAYSSLNLGQIPAWYNSRWLVIDTTLESCWAPVNKLDGSFGFNGSHRCVDILWNHISSVHQTTGHVFSMAGVTLGH
        LCVHEI+FVV  G  L D  GVG+HA+ + +LG+I +W +S WLV+D+ LES WAPVN+LDGS G +G    V++LWN +SSV +   HV S+A +TL H
Subjt:  LCVHEIKFVVNAGEDLCDTCGVGDHAYSSLNLGQIPAWYNSRWLVIDTTLESCWAPVNKLDGSFGFNGSHRCVDILWNHISSVHQTTGHVFSMAGVTLGH

TrEMBL top hitse value%identityAlignment
A0A023G3K8 Putative alpha tubulin (Fragment)4.1e-2450.49Show/hide
Query:  KSPLCVHEIKFVVNAGEDLCDTCGVGDHAYSSLNLGQIPAWYNSRWLVIDTTLESCWAPVNKLDGSFGFNGSHRCVDILWNHISSVHQTTGHVFSMAGVT
        + PL +HE++ V+     LC+  GV  HA+S+L LGQ+    NS  LV+D+ LE+ WAPVNKLDG+ G +G + CVDILW+HI++V +T GHV  M G+T
Subjt:  KSPLCVHEIKFVVNAGEDLCDTCGVGDHAYSSLNLGQIPAWYNSRWLVIDTTLESCWAPVNKLDGSFGFNGSHRCVDILWNHISSVHQTTGHVFSMAGVT

Query:  LGH
        L H
Subjt:  LGH

A0A433T8Y9 Uncharacterized protein (Fragment)2.3e-2246.6Show/hide
Query:  KSPLCVHEIKFVVNAGEDLCDTCGVGDHAYSSLNLGQIPAWYNSRWLVIDTTLESCWAPVNKLDGSFGFNGSHRCVDILWNHISSVHQTTGHVFSMAGVT
        +SPL +HE+K VV +G  L +  GV  HA+S+L+LGQ+ +W NS  LV+D  LE+ W PV+KLDG  G +G + CVD+L +++++V    GHV +++G+T
Subjt:  KSPLCVHEIKFVVNAGEDLCDTCGVGDHAYSSLNLGQIPAWYNSRWLVIDTTLESCWAPVNKLDGSFGFNGSHRCVDILWNHISSVHQTTGHVFSMAGVT

Query:  LGH
        L H
Subjt:  LGH

A0A4Y1RZ79 Uncharacterized protein2.2e-2551.89Show/hide
Query:  MHKSPLCVHEIKFVVNAGEDLCDTCGVGDHAYSSLNLGQIPAWYNSRWLVIDTTLESCWAPVNKLDGSFGFNGSHRCVDILWNHISSVHQTTGHVFSMAG
        +HK  L +H++K VVN+GE L +   VGDHA+S LNLG++ +W NS WLV+DT LES  APV KL+G+ G +G +  + IL ++I++VH+   HVF++A 
Subjt:  MHKSPLCVHEIKFVVNAGEDLCDTCGVGDHAYSSLNLGQIPAWYNSRWLVIDTTLESCWAPVNKLDGSFGFNGSHRCVDILWNHISSVHQTTGHVFSMAG

Query:  VTLGHH
        VTLGHH
Subjt:  VTLGHH

A0A5A7PXT3 P-loop containing nucleoside triphosphatehydrolases superfamily protein (Fragment)3.2e-2450.47Show/hide
Query:  MHKSPLCVHEIKFVVNAGEDLCDTCGVGDHAYSSLNLGQIPAWYNSRWLVIDTTLESCWAPVNKLDGSFGFNGSHRCVDILWNHISSVHQTTGHVFSMAG
        +HK PL +H++K VVN  E L +T  V  HA+  L+L Q+    +S WLV+D  LES  APV+KL+G+FGF+  H C++ILW+HI+SVH+   HV SM+ 
Subjt:  MHKSPLCVHEIKFVVNAGEDLCDTCGVGDHAYSSLNLGQIPAWYNSRWLVIDTTLESCWAPVNKLDGSFGFNGSHRCVDILWNHISSVHQTTGHVFSMAG

Query:  VTLGHHG
        VT  HHG
Subjt:  VTLGHHG

A0A6A5HMK8 Uncharacterized protein1.9e-2454Show/hide
Query:  LCVHEIKFVVNAGEDLCDTCGVGDHAYSSLNLGQIPAWYNSRWLVIDTTLESCWAPVNKLDGSFGFNGSHRCVDILWNHISSVHQTTGHVFSMAGVTLGH
        LCVHEI+FVV  G  L D  GVG+HA+ + +LG+I +W +S WLV+D+ LES WAPVN+LDGS G +G    V++LWN +SSV +   HV S+A +TL H
Subjt:  LCVHEIKFVVNAGEDLCDTCGVGDHAYSSLNLGQIPAWYNSRWLVIDTTLESCWAPVNKLDGSFGFNGSHRCVDILWNHISSVHQTTGHVFSMAGVTLGH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACAAAAGCCCTCTTTGCGTACATGAGATCAAATTTGTGGTCAATGCGGGAGAAGACCTCTGCGACACTTGTGGAGTTGGAGATCATGCATACAGCTCTTTGAACCT
TGGCCAAATCCCCGCCTGGTACAACAGTAGGTGGCTGGTAATTGATACCACACTTGAATCCTGTTGGGCACCAGTCAACAAATTGGATGGTTCGTTTGGTTTTAATGGTA
GCCACCGCTGCGTTGACATCCTTTGGAACCACATCTCCTCTGTACATCAAACAACAGGCCATGTATTTTCCATGGCGGGGGTCACACTTGGCCATCATGGATGA
mRNA sequenceShow/hide mRNA sequence
CACACCATTGAAGTAGAAAGGAGATACACACCATTAAAGCAAGCAATACGGTCACGATGAGCTGCATCACTCCAGAGGAGGACACATTAGCAAATATTATAGTCAACTGC
TAAGTGAAGCACATGGCTATTACAACATATAGCAACAATAACACCGGAGATAACAGAAACTAAAGGGAAACTACTATTGTGGAAACATGTAAACTTCTTTCCAACCTAAT
AGTCTTCTCCTTCTTCGTCATCATCATCACCCGCCTCAGCACCGACCTCCTCGTAGTCCTTCTCCAACGCAGCAAGATCCTCCCTAGCCTCAGAGAACTCGCCTTCTTCC
ATACCCTCACCCACGTACCAATGCACAAAAGCCCTCTTTGCGTACATGAGATCAAATTTGTGGTCAATGCGGGAGAAGACCTCTGCGACACTTGTGGAGTTGGAGATCAT
GCATACAGCTCTTTGAACCTTGGCCAAATCCCCGCCTGGTACAACAGTAGGTGGCTGGTAATTGATACCACACTTGAATCCTGTTGGGCACCAGTCAACAAATTGGATGG
TTCGTTTGGTTTTAATGGTAGCCACCGCTGCGTTGACATCCTTTGGAACCACATCTCCTCTGTACATCAAACAACAGGCCATGTATTTTCCATGGCGGGGGTCACACTTG
GCCATCATGGATGA
Protein sequenceShow/hide protein sequence
MHKSPLCVHEIKFVVNAGEDLCDTCGVGDHAYSSLNLGQIPAWYNSRWLVIDTTLESCWAPVNKLDGSFGFNGSHRCVDILWNHISSVHQTTGHVFSMAGVTLGHHG