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Cmc08g0216671 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0216671
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionProtein pleiotropic regulatory locus 1
Genome locationCMiso1.1chr08:5715747..5716717
RNA-Seq ExpressionCmc08g0216671
SyntenyCmc08g0216671
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0000974 - Prp19 complex (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR015943 - WD40/YVTN repeat-like-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025721.1 protein pleiotropic regulatory locus 1 [Cucumis melo var. makuwa]5.2e-2795.16Show/hide
Query:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKTNRCG
        VSGVDNGSLWFWDWNTAYNFQRSQT AQPGSLDS+AGIYALSY ITGSRLVTCEADKTNRCG
Subjt:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKTNRCG

KGN48861.1 hypothetical protein Csa_003772 [Cucumis sativus]5.0e-2285.25Show/hide
Query:  SGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKTNRCG
        SG DNG LWFWDW TAYNFQ+SQTIAQP SLDS+AGIYALSY I GSRLVTCEADKT RCG
Subjt:  SGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKTNRCG

XP_008458420.1 PREDICTED: protein pleiotropic regulatory locus 1 [Cucumis melo]3.6e-2082.76Show/hide
Query:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT
        V+G DNGSLWFWDW + +NFQ+SQTI QPGSLDS+AGIYALSY ITGSRLVTCEADKT
Subjt:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT

XP_022138465.1 protein pleiotropic regulatory locus 1 [Momordica charantia]4.7e-2081.03Show/hide
Query:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT
        V+G DNGSLWFWDW + +NFQ+SQTI QPGSLDS+AGIYALSY ITGSRL+TCEADKT
Subjt:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT

XP_038874340.1 protein pleiotropic regulatory locus 1 [Benincasa hispida]3.6e-2082.76Show/hide
Query:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT
        V+G DNGSLWFWDW + +NFQ+SQTI QPGSLDS+AGIYALSY ITGSRLVTCEADKT
Subjt:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT

TrEMBL top hitse value%identityAlignment
A0A0A0KM95 Uncharacterized protein2.4e-2285.25Show/hide
Query:  SGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKTNRCG
        SG DNG LWFWDW TAYNFQ+SQTIAQP SLDS+AGIYALSY I GSRLVTCEADKT RCG
Subjt:  SGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKTNRCG

A0A1S3C7C3 protein pleiotropic regulatory locus 11.7e-2082.76Show/hide
Query:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT
        V+G DNGSLWFWDW + +NFQ+SQTI QPGSLDS+AGIYALSY ITGSRLVTCEADKT
Subjt:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT

A0A5D3CQ93 Protein pleiotropic regulatory locus 12.5e-2795.16Show/hide
Query:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKTNRCG
        VSGVDNGSLWFWDWNTAYNFQRSQT AQPGSLDS+AGIYALSY ITGSRLVTCEADKTNRCG
Subjt:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKTNRCG

A0A6J1CB66 protein pleiotropic regulatory locus 12.3e-2081.03Show/hide
Query:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT
        V+G DNGSLWFWDW + +NFQ+SQTI QPGSLDS+AGIYALSY ITGSRL+TCEADKT
Subjt:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT

W1P3X1 WD_REPEATS_REGION domain-containing protein3.9e-2077.59Show/hide
Query:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT
        V+G DNGSLWFWDWN+ +NFQ++QTI QPGSLDS+AGIYALSY +TGSRL++CEADKT
Subjt:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT

SwissProt top hitse value%identityAlignment
O13615 Pre-mRNA-splicing factor prp52.1e-1559.65Show/hide
Query:  SGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT
        SG DNGS+ FWDW + + +Q  Q++ QPGSLDS+AGI+A S+  TG RL+TCEADK+
Subjt:  SGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT

O43660 Pleiotropic regulator 13.1e-1458.62Show/hide
Query:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT
        VSG DNG++  WDW T YNFQR     QPGSLDS++GI+A ++  + SRL+T EADKT
Subjt:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT

Q2KID6 Pleiotropic regulator 13.1e-1458.62Show/hide
Query:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT
        VSG DNG++  WDW T YNFQR     QPGSLDS++GI+A ++  + SRL+T EADKT
Subjt:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT

Q39190 Protein pleiotropic regulator PRL29.2e-1968.97Show/hide
Query:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT
        V+G D G LWFWDW + +NFQR++TI QPGSL+S+AGIYA  Y  TGSRLVTCE DKT
Subjt:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT

Q42384 Protein pleiotropic regulatory locus 11.8e-1970.69Show/hide
Query:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT
        V+G DNGS+WFWDW + ++FQ+S+TI QPGSL+S+AGIYA  Y  TGSRLVTCEADKT
Subjt:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT

Arabidopsis top hitse value%identityAlignment
AT3G16650.1 Transducin/WD40 repeat-like superfamily protein6.5e-2068.97Show/hide
Query:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT
        V+G D G LWFWDW + +NFQR++TI QPGSL+S+AGIYA  Y  TGSRLVTCE DKT
Subjt:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT

AT4G15900.1 pleiotropic regulatory locus 11.3e-2070.69Show/hide
Query:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT
        V+G DNGS+WFWDW + ++FQ+S+TI QPGSL+S+AGIYA  Y  TGSRLVTCEADKT
Subjt:  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGTGGATGTCAGTGAGTGGAGTTGACAATGGTAGTTTATGGTTCTGGGATTGGAATACTGCTTATAACTTTCAGCGATCACAAACAATTGCTCAACCTGGCTCGTT
GGATAGTGATGCTGGGATTTATGCTCTTTCCTATTACATAACTGGTTCGAGGCTTGTAACTTGTGAAGCAGATAAAACTAATAGATGTGGATAG
mRNA sequenceShow/hide mRNA sequence
GTCGGGATTGGTAAAATTACAGAGTCATAAGTGGTCACCTAAGTTGTGTAGGGTCTATTGCATTTGATCCAAGCAACATGTGTTTTTGTACTGGATCAGTAGATCGTACC
AACGGGATTTGAGATGAAGAACAAGTCAAATGCTGGGATCTCTAACAGAACAAGGTTGTGATTGTCTCCCATGACCTAACTATTACGTTTTGGGATCGTAGATATGGAAA
AACAATGACAACTCTAACACATCAGAAGAAATCTTTTCGAGCAATGGCACAACATCCTAACAACACAGTGTCTTTGCATCTGCTTCAGCGGATAATATCAAGAAATTTAA
TCTTCCCAGAGGGGAGTTTGGGCAGAACATGCGGTGGATGTCAGTGAGTGGAGTTGACAATGGTAGTTTATGGTTCTGGGATTGGAATACTGCTTATAACTTTCAGCGAT
CACAAACAATTGCTCAACCTGGCTCGTTGGATAGTGATGCTGGGATTTATGCTCTTTCCTATTACATAACTGGTTCGAGGCTTGTAACTTGTGAAGCAGATAAAACTAAT
AGATGTGGATAGAAGATGAAAATGCTACCCCTATAACTGACTATCTCTTCAAAAATATCAAGCCATCCGAAGATATACGAAGACTCTAGGCTTAGTTTTTCAATTTTTTT
TAATTTCTTTTTTGTTGTAAATATAATCACTAACGTTTGTGAATTCTTTGGAAATTAGTCAATTTTCCTTAGAACATTGTAATTGTCATGTTTCTATTTTCTCTTACAAA
CTACGAAGTACAGAATATTT
Protein sequenceShow/hide protein sequence
MRWMSVSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKTNRCG