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Cmc08g0220431 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0220431
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionLysM domain-containing protein
Genome locationCMiso1.1chr08:8393494..8394275
RNA-Seq ExpressionCmc08g0220431
SyntenyCmc08g0220431
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647420.1 hypothetical protein Csa_003059 [Cucumis sativus]5.5e-4490.38Show/hide
Query:  MGKRSPSPPPPPSSSKATVVSLVILVLSCLIWCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHFIKYPT
        MGKRS S     S SKA VVSLVILVLSCLIWCCKSSELL YNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHF KYPT
Subjt:  MGKRSPSPPPPPSSSKATVVSLVILVLSCLIWCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHFIKYPT

Query:  FLTP
        FLTP
Subjt:  FLTP
KAG6595189.1 hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sororia]7.8e-2268.29Show/hide
Query:  SSSKATVVSLVILVLSCLIWCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
        SSS+   + LV+++    +WCC S E+L   C+EIYVV EGETLQSISEKCGDPFI E NPHIND DDVFPGLVIKITPF H
Subjt:  SSSKATVVSLVILVLSCLIWCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
OMO68297.1 hypothetical protein COLO4_29778 [Corchorus olitorius]3.6e-1961.11Show/hide
Query:  VILVLSCLIWCCKSSELLEYN------------------CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
        V+LVLS    CC+SS+  E+                   C+EIYVV EGETLQ+ISEKCGDP+IVEENPHI+DPDDVFPGLVIKITPFH+
Subjt:  VILVLSCLIWCCKSSELLEYN------------------CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
XP_010271716.1 PREDICTED: uncharacterized protein LOC104607716 [Nelumbo nucifera]2.8e-1965Show/hide
Query:  VILVLSCLIWCCKSSE----------LLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
        ++LV+  L+ CC SSE          ++   C+EIYVV EGETL +ISEKCGDPFIVEENPHI+DPDDVFPGLVIKITPF
Subjt:  VILVLSCLIWCCKSSE----------LLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
XP_022744694.1 uncharacterized protein LOC111295462 [Durio zibethinus]1.6e-1963.53Show/hide
Query:  VILVLSCLIWCCKSSELLEYN-------------CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
        V+L+LSC   CC+ S   +Y              C+EIYVV EGETLQ+ISEKCGDPFIVEENPHI+DPDDVFPGLVIKITPF++
Subjt:  VILVLSCLIWCCKSSELLEYN-------------CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
TrEMBL top hitse value%identityAlignment
A0A1R3HD93 LysM domain-containing protein1.7e-1961.11Show/hide
Query:  VILVLSCLIWCCKSSELLEYN------------------CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
        V+LVLS    CC+SS+  E+                   C+EIYVV EGETLQ+ISEKCGDP+IVEENPHI+DPDDVFPGLVIKITPFH+
Subjt:  VILVLSCLIWCCKSSELLEYN------------------CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
A0A1R3IHT9 LysM domain-containing protein1.7e-1961.11Show/hide
Query:  VILVLSCLIWCCKSSELLEYN------------------CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
        V+LVLS    CC+SS+  E+                   C+EIYVV EGETLQ+ISEKCGDP+IVEENPHI+DPDDVFPGLVIKITPFH+
Subjt:  VILVLSCLIWCCKSSELLEYN------------------CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
A0A1U8AYB4 uncharacterized protein LOC1046077161.3e-1965Show/hide
Query:  VILVLSCLIWCCKSSE----------LLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
        ++LV+  L+ CC SSE          ++   C+EIYVV EGETL +ISEKCGDPFIVEENPHI+DPDDVFPGLVIKITPF
Subjt:  VILVLSCLIWCCKSSE----------LLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
A0A6P5YVX7 uncharacterized protein LOC1112954627.8e-2063.53Show/hide
Query:  VILVLSCLIWCCKSSELLEYN-------------CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
        V+L+LSC   CC+ S   +Y              C+EIYVV EGETLQ+ISEKCGDPFIVEENPHI+DPDDVFPGLVIKITPF++
Subjt:  VILVLSCLIWCCKSSELLEYN-------------CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
A0A803MQG7 Uncharacterized protein3.9e-1973.02Show/hide
Query:  WCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
        W   S +++   C+E+YVV EGETL SISEKCGDP+IVEENPHINDPDDVFPGLVIKITPF +
Subjt:  WCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52790.1 peptidoglycan-binding LysM domain-containing protein6.1e-1777.08Show/hide
Query:  CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITP
        C+EIY V EGETLQ+ISEKCGDP+IVE NPHI+D DD+FPGL+I+ITP
Subjt:  CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITP
AT4G25433.1 peptidoglycan-binding LysM domain-containing protein1.0e-1966.13Show/hide
Query:  SCLIWCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKI
        +C +W  +  +++E  CEE+YVV EG+TL SISEKCGDPFIVE NPHI+DPDDVFPGL+IK+
Subjt:  SCLIWCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKI
AT5G62150.1 peptidoglycan-binding LysM domain-containing protein2.3e-1967.8Show/hide
Query:  KSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFH
        + S+     CEEIY+V EGETL +I +KCGDPFIVE NPHI+DPDDVFPGLV+KI PF+
Subjt:  KSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFH

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAGAGATCACCATCACCACCACCACCACCATCCTCATCAAAGGCAACGGTGGTTAGTTTGGTAATTTTGGTATTGAGTTGCTTAATATGGTGTTGCAAGAGCAG
TGAATTATTAGAGTACAATTGTGAAGAGATATATGTTGTTCATGAAGGAGAAACTTTGCAAAGCATTAGTGAAAAATGTGGAGATCCATTCATTGTTGAAGAAAATCCTC
ACATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTTATCAAGATCACTCCTTTTCACCATTTTATCAAATATCCCACCTTTCTCACACCTTAA
mRNA sequenceShow/hide mRNA sequence
CTTCATTGAAGGAACCTTTCAACTTCCTCTCAAGAAAAAACTTCACCCACTTCAACTACCTTTATAACCCAAACCTTATTCATTTCTTTCTTATACACACACACATGTAT
ATATACACATATTAGCATTAAGAAACATAACCAATTAATTCCATATAGAAGTGTTATATATACAATGGGGAAGAGATCACCATCACCACCACCACCACCATCCTCATCAA
AGGCAACGGTGGTTAGTTTGGTAATTTTGGTATTGAGTTGCTTAATATGGTGTTGCAAGAGCAGTGAATTATTAGAGTACAATTGTGAAGAGATATATGTTGTTCATGAA
GGAGAAACTTTGCAAAGCATTAGTGAAAAATGTGGAGATCCATTCATTGTTGAAGAAAATCCTCACATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTTATCAAGAT
CACTCCTTTTCACCATTTTATCAAATATCCCACCTTTCTCACACCTTAATTATTATTCATCTAATTCAATTATATTTTTCTTGGGTTATTATATCATTATATATATTGCT
TCTTCTTTTGTTTCCGATAAGTTTTTGTAATGGATAATCTTATGTGTATCTTTTTAGTTAACAATTGTAATGGTGTGGAAAATTGAACCGTCCGTCCTTGAAACGATAAT
TTTTTTTTTCTTTTTGACAATATAGGTGTAAAGAAGAATCAAACTTTTTAACTTTTTCGAGATTTATTCTATTTGCTTTATAATAATACTTATGCTTATCATGATTTACT
GAGTTATGTTCA
Protein sequenceShow/hide protein sequence
MGKRSPSPPPPPSSSKATVVSLVILVLSCLIWCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHFIKYPTFLTP