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Cmc08g0220571 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0220571
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRAB6-interacting golgin
Genome locationCMiso1.1chr08:8483747..8485647
RNA-Seq ExpressionCmc08g0220571
SyntenyCmc08g0220571
Gene Ontology termsGO:0005794 - Golgi apparatus (cellular component)
InterPro domainsIPR007033 - RAB6-interacting golgin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025281.1 putative DNA double-strand break repair Rad50 ATPase isoform X2 [Cucumis melo var. makuwa]5.3e-7395.76Show/hide
Query:  MQTDQNPPQQLQAMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
        MQTDQNPPQQLQ MLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
Subjt:  MQTDQNPPQQLQAMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
        NKELKPLG      EKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
Subjt:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS

XP_004143305.1 uncharacterized protein LOC101209289 [Cucumis sativus]7.8e-7797.58Show/hide
Query:  MQTDQNPPQQLQAMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
        MQ+DQNPPQQLQAMLENS NLSFSSKEDDEMSKSALAAFREKEEEIDRMRTEL+NKLQ+RLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
Subjt:  MQTDQNPPQQLQAMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
        NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
Subjt:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS

XP_008462544.1 PREDICTED: uncharacterized protein LOC103500877 [Cucumis melo]1.1e-7899.39Show/hide
Query:  MQTDQNPPQQLQAMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
        MQTDQNPPQQLQ MLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
Subjt:  MQTDQNPPQQLQAMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
        NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
Subjt:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS

XP_023543803.1 uncharacterized protein LOC111803564 [Cucurbita pepo subsp. pepo]4.5e-6483.64Show/hide
Query:  MQTDQNPPQQLQAMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
        MQ +QN PQQLQ ML+NSGNLSFSSKED+EMSKSAL+AFREKEEEI+RMRTEL  KLQ RLGRV+EESRRL+S+REELE I GDP RKEIGQIRK+ID L
Subjt:  MQTDQNPPQQLQAMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
        NKELKPLG  CQKKEKEYKDALD+FNEKNNEKVQ ISKLMEMVGESE++RLKRLEELSKHVDN +
Subjt:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS

XP_038882826.1 uncharacterized protein LOC120073968 isoform X1 [Benincasa hispida]1.7e-7191.52Show/hide
Query:  MQTDQNPPQQLQAMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
        MQ+DQN PQQLQAML+NS +LSFSSKEDD+MSKSALAAFREKEEEIDRMR +LHNKLQVRLGRVQEESRRL+S+REEL+AI GDPMRKEIGQIRKKIDAL
Subjt:  MQTDQNPPQQLQAMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
        NKELKPLG+TCQKKEKEYKDALD+FNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
Subjt:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS

TrEMBL top hitse value%identityAlignment
A0A0A0KHE9 RAB6-interacting golgin3.8e-7797.58Show/hide
Query:  MQTDQNPPQQLQAMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
        MQ+DQNPPQQLQAMLENS NLSFSSKEDDEMSKSALAAFREKEEEIDRMRTEL+NKLQ+RLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
Subjt:  MQTDQNPPQQLQAMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
        NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
Subjt:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS

A0A1S3CIS0 RAB6-interacting golgin5.3e-7999.39Show/hide
Query:  MQTDQNPPQQLQAMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
        MQTDQNPPQQLQ MLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
Subjt:  MQTDQNPPQQLQAMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
        NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
Subjt:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS

A0A5A7SM04 RAB6-interacting golgin2.5e-7395.76Show/hide
Query:  MQTDQNPPQQLQAMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
        MQTDQNPPQQLQ MLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
Subjt:  MQTDQNPPQQLQAMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
        NKELKPLG      EKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
Subjt:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS

A0A6J1EJF7 RAB6-interacting golgin1.4e-6383.03Show/hide
Query:  MQTDQNPPQQLQAMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
        MQ +QN PQQLQ ML+NSGNLSFSSKED+EMSKSAL+AFREKEEEI+RMRTEL  KLQ RLGRV+EESRRL+S+REELE I GDP RKEIGQIRK+ID L
Subjt:  MQTDQNPPQQLQAMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
        NKELKPLG  CQKKEKEYKDALD+FNEKNNEKV  ISKLMEMVGESE++RLKRLEELSKHVDN +
Subjt:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS

A0A6J1IS07 RAB6-interacting golgin2.8e-6484.66Show/hide
Query:  MQTDQNPPQQLQAMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
        MQ +QN PQQLQ ML+NSGNLSFSSKED+EMSKSAL+AFREKEEEI+RMRTEL  KLQ RLGRV+EESRRL+S+REELE I GDP RKEIGQIRK+ID L
Subjt:  MQTDQNPPQQLQAMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDN
        NKELKPLG  CQKKEKEYKDALD+FNEKNNEKVQ ISKLMEMVGESE++RLKRLEELSKHVDN
Subjt:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G36410.1 Family of unknown function (DUF662)1.3e-4560.48Show/hide
Query:  QTDQNPPQQLQAMLENSGNLSFS---SKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKID
        Q    P QQ   M+ ++G+LSFS   S+ED+EM++SAL+AFR KE+EI++ R E+  ++Q +LGRV++E++RLS++REELE++  DPMRKE+  +RKKID
Subjt:  QTDQNPPQQLQAMLENSGNLSFS---SKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKID

Query:  ALNKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEM---VGESEKLRLKRLEELSKHVD
        ++NKELKPLG T QKKE+EYK+ALD+FNEKN EKVQLI+KLMEM   VGESEKLR+ +LEELSK ++
Subjt:  ALNKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEM---VGESEKLRLKRLEELSKHVD

AT2G36410.2 Family of unknown function (DUF662)6.9e-4760.98Show/hide
Query:  QTDQNPPQQLQAMLENSGNLSFS---SKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKID
        Q    P QQ   M+ ++G+LSFS   S+ED+EM++SAL+AFR KE+EI++ R E+  ++Q +LGRV++E++RLS++REELE++  DPMRKE+  +RKKID
Subjt:  QTDQNPPQQLQAMLENSGNLSFS---SKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKID

Query:  ALNKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVD
        ++NKELKPLG T QKKE+EYK+ALD+FNEKN EKVQLI+KLME+VGESEKLR+ +LEELSK ++
Subjt:  ALNKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVD

AT2G36410.3 Family of unknown function (DUF662)1.0e-4560.37Show/hide
Query:  QTDQNPPQQLQAMLENSGNLSFS---SKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKID
        Q    P QQ   M+ ++G+LSFS   S+ED+EM++SAL+AFR KE+EI++ R E+  ++Q +LGRV++E++RLS++REELE++  DPMRKE+  +RKKID
Subjt:  QTDQNPPQQLQAMLENSGNLSFS---SKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKID

Query:  ALNKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVD
        ++NKELKPLG T QKK  EYK+ALD+FNEKN EKVQLI+KLME+VGESEKLR+ +LEELSK ++
Subjt:  ALNKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVD

AT3G09980.1 Family of unknown function (DUF662)2.6e-4662.66Show/hide
Query:  QQLQAMLENSGNLSFS---SKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDALNKELK
        +QL A L  SG++SFS   SKED+EMS++AL+AFR KEEEI++ + E+  ++Q +LGRV+EE++RL+ +REELE +  DPMRKE+  +RKKID++NKELK
Subjt:  QQLQAMLENSGNLSFS---SKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDALNKELK

Query:  PLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDN
        PLG T QKKE+EYK+AL++FNEKN EKVQLI++LME+VGESEK+R+K+LEELSK++D+
Subjt:  PLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDN

AT3G52920.2 Family of unknown function (DUF662)2.0e-4662.35Show/hide
Query:  PPQQLQAMLENSGNLSFS---SKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDALNKE
        PPQQ+        +LSFS   SKED+EM++SAL+AFR KE+EI++ + E+  +++ +LGRV+EE+RRL+S+REELE +  DPMRKE+  +RKKID++NKE
Subjt:  PPQQLQAMLENSGNLSFS---SKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDALNKE

Query:  LKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
        LKPLG T QKKE+EYK+ALD+FNEKN EKVQLI+KLME+VGESEKLRLK+L+ELS+ +D  S
Subjt:  LKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGACCGACCAGAATCCACCGCAGCAACTTCAAGCAATGTTAGAGAATTCTGGAAATTTGAGTTTCAGTAGTAAAGAAGACGATGAGATGTCCAAATCGGCGCTTGC
TGCTTTTAGGGAAAAGGAAGAAGAGATCGATCGCATGAGGACTGAGCTTCACAACAAACTTCAAGTTCGTCTCGGCCGTGTTCAGGAAGAATCCAGGCGTTTGTCTTCAC
TTCGAGAGGAACTTGAAGCCATAGGAGGAGATCCAATGAGGAAGGAAATTGGACAAATTCGTAAGAAAATTGATGCCCTAAACAAGGAATTGAAGCCTCTTGGAGTAACG
TGCCAAAAGAAGGAGAAAGAGTACAAAGATGCCCTTGATTCTTTTAATGAAAAGAACAACGAAAAAGTACAGTTAATATCAAAACTAATGGAGATGGTTGGTGAAAGTGA
AAAGCTGAGGCTAAAGAGGTTGGAAGAATTGAGTAAGCATGTGGATAACACTTCCTAA
mRNA sequenceShow/hide mRNA sequence
AGTAAAGGGATTAAAATGAGAGGGAGAAAATGATATTTTAACCCAATAGAAAAAGAAAGCTAACAGAGCAATAGCCTAAGAAAGAAAAAGGCAGAGGAAAGGAAATAGCG
ATTCCTTCATTCATTCATAGAAACACAAACTAAAGGGGGCGTTGGTTTCAAGAAAAATCAAGATCAAGGACCAAAGGGAAAGATGCAGACCGACCAGAATCCACCGCAGC
AACTTCAAGCAATGTTAGAGAATTCTGGAAATTTGAGTTTCAGTAGTAAAGAAGACGATGAGATGTCCAAATCGGCGCTTGCTGCTTTTAGGGAAAAGGAAGAAGAGATC
GATCGCATGAGGACTGAGCTTCACAACAAACTTCAAGTTCGTCTCGGCCGTGTTCAGGAAGAATCCAGGCGTTTGTCTTCACTTCGAGAGGAACTTGAAGCCATAGGAGG
AGATCCAATGAGGAAGGAAATTGGACAAATTCGTAAGAAAATTGATGCCCTAAACAAGGAATTGAAGCCTCTTGGAGTAACGTGCCAAAAGAAGGAGAAAGAGTACAAAG
ATGCCCTTGATTCTTTTAATGAAAAGAACAACGAAAAAGTACAGTTAATATCAAAACTAATGGAGATGGTTGGTGAAAGTGAAAAGCTGAGGCTAAAGAGGTTGGAAGAA
TTGAGTAAGCATGTGGATAACACTTCCTAATTCAATTACTAAATTCAATCAATCAATCAGTTTCTATTAGTTTCCTTTGGGGTTTTTATGTTGTTTTCTTTTTTCTTAAA
AATGTTTGTATTGGGTGTTTGAAATTTAACCAGGGTCTGTCATATGTTTTTTATTTCATTTTGGTTTAAATTTACTTTCACTAAACATTCTTATTTTAGGATCATATTTA
TATATATGTATGTAGTGCTCTTAACCTTACAAATATATCTTGTATCTAAACTTT
Protein sequenceShow/hide protein sequence
MQTDQNPPQQLQAMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDALNKELKPLGVT
CQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS