; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0220871 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0220871
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRibonuclease H
Genome locationCMiso1.1chr08:8729826..8730929
RNA-Seq ExpressionCmc08g0220871
SyntenyCmc08g0220871
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031752.1 uncharacterized protein E6C27_scaffold506G00150 [Cucumis melo var. makuwa]1.3e-20999.73Show/hide
Query:  MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR
        MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR
Subjt:  MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR

Query:  LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN
        LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN
Subjt:  LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN

Query:  YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF
        YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF
Subjt:  YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF

Query:  VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI
        VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI
Subjt:  VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]1.7e-20999.45Show/hide
Query:  MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR
        MQRIFDDMLHKH+ECYVDDLVVKSKKKCDHLKDLK VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR
Subjt:  MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR

Query:  LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN
        LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN
Subjt:  LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN

Query:  YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF
        YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF
Subjt:  YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF

Query:  VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI
        VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI
Subjt:  VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI

TYK02262.1 uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa]1.3e-20999.73Show/hide
Query:  MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR
        MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR
Subjt:  MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR

Query:  LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN
        LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN
Subjt:  LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN

Query:  YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF
        YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF
Subjt:  YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF

Query:  VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI
        VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI
Subjt:  VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI

TYK16275.1 uncharacterized protein E5676_scaffold21G00440 [Cucumis melo var. makuwa]1.7e-20999.45Show/hide
Query:  MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR
        MQRIFDDMLHKH+ECYVDDLVVKSKKKCDHLKDLK VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR
Subjt:  MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR

Query:  LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN
        LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN
Subjt:  LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN

Query:  YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF
        YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF
Subjt:  YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF

Query:  VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI
        VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI
Subjt:  VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI

TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]1.7e-20999.45Show/hide
Query:  MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR
        MQRIFDDMLHKH+ECYVDDLVVKSKKKCDHLKDLK VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR
Subjt:  MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR

Query:  LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN
        LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN
Subjt:  LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN

Query:  YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF
        YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF
Subjt:  YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF

Query:  VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI
        VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI
Subjt:  VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI

TrEMBL top hitse value%identityAlignment
A0A5A7SKZ3 Ribonuclease H6.4e-21099.73Show/hide
Query:  MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR
        MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR
Subjt:  MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR

Query:  LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN
        LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN
Subjt:  LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN

Query:  YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF
        YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF
Subjt:  YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF

Query:  VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI
        VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI
Subjt:  VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI

A0A5A7TZU9 Ribonuclease H8.4e-21099.45Show/hide
Query:  MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR
        MQRIFDDMLHKH+ECYVDDLVVKSKKKCDHLKDLK VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR
Subjt:  MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR

Query:  LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN
        LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN
Subjt:  LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN

Query:  YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF
        YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF
Subjt:  YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF

Query:  VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI
        VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI
Subjt:  VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI

A0A5D3BTY1 Ribonuclease H6.4e-21099.73Show/hide
Query:  MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR
        MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR
Subjt:  MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR

Query:  LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN
        LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN
Subjt:  LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN

Query:  YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF
        YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF
Subjt:  YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF

Query:  VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI
        VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI
Subjt:  VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI

A0A5D3CXS1 Uncharacterized protein8.4e-21099.45Show/hide
Query:  MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR
        MQRIFDDMLHKH+ECYVDDLVVKSKKKCDHLKDLK VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR
Subjt:  MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR

Query:  LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN
        LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN
Subjt:  LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN

Query:  YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF
        YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF
Subjt:  YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF

Query:  VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI
        VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI
Subjt:  VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI

A0A5D3D1E5 Ribonuclease H8.4e-21099.45Show/hide
Query:  MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR
        MQRIFDDMLHKH+ECYVDDLVVKSKKKCDHLKDLK VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR
Subjt:  MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGR

Query:  LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN
        LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN
Subjt:  LAYIRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELN

Query:  YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF
        YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF
Subjt:  YSPIEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLF

Query:  VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI
        VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI
Subjt:  VESMEPWIMFFDGAARRSGAGVGIVFISPEKHMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGI

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein6.5e-3429.15Show/hide
Query:  IFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAY
        I  +    H+ CY+DD+++ SK + +H+K +K VL +L+   L +N  KC F  +  KF+G+ +  +G       ID + +   PKN  ELR+  G + Y
Subjt:  IFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAY

Query:  IRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELNYSP
        +R+FI   +    P   L++KD  + W  +   A ++IK+ L++PPVL      K ++L   A + ++GA+L+Q++D  K   + Y S  ++ A+LNYS 
Subjt:  IRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELNYSP

Query:  IEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISG-----------RLAKWAIILQ--QYDIVYIPQKAVKGQALADFLA-----DHPVPS
         +K  LA+  ++   RHY++       +  +P K +     + G           RLA+W + LQ   ++I Y P  A     +AD L+       P+P 
Subjt:  IEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISG-----------RLAKWAIILQ--QYDIVYIPQKAVKGQALADFLA-----DHPVPS

Query:  NWKLCDDLPDEEVLFVESM
              D  D  + FV  +
Subjt:  NWKLCDDLPDEEVLFVESM

P0CT35 Transposon Tf2-2 polyprotein6.5e-3429.15Show/hide
Query:  IFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAY
        I  +    H+ CY+DD+++ SK + +H+K +K VL +L+   L +N  KC F  +  KF+G+ +  +G       ID + +   PKN  ELR+  G + Y
Subjt:  IFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAY

Query:  IRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELNYSP
        +R+FI   +    P   L++KD  + W  +   A ++IK+ L++PPVL      K ++L   A + ++GA+L+Q++D  K   + Y S  ++ A+LNYS 
Subjt:  IRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELNYSP

Query:  IEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISG-----------RLAKWAIILQ--QYDIVYIPQKAVKGQALADFLA-----DHPVPS
         +K  LA+  ++   RHY++       +  +P K +     + G           RLA+W + LQ   ++I Y P  A     +AD L+       P+P 
Subjt:  IEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISG-----------RLAKWAIILQ--QYDIVYIPQKAVKGQALADFLA-----DHPVPS

Query:  NWKLCDDLPDEEVLFVESM
              D  D  + FV  +
Subjt:  NWKLCDDLPDEEVLFVESM

P0CT36 Transposon Tf2-3 polyprotein6.5e-3429.15Show/hide
Query:  IFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAY
        I  +    H+ CY+DD+++ SK + +H+K +K VL +L+   L +N  KC F  +  KF+G+ +  +G       ID + +   PKN  ELR+  G + Y
Subjt:  IFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAY

Query:  IRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELNYSP
        +R+FI   +    P   L++KD  + W  +   A ++IK+ L++PPVL      K ++L   A + ++GA+L+Q++D  K   + Y S  ++ A+LNYS 
Subjt:  IRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELNYSP

Query:  IEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISG-----------RLAKWAIILQ--QYDIVYIPQKAVKGQALADFLA-----DHPVPS
         +K  LA+  ++   RHY++       +  +P K +     + G           RLA+W + LQ   ++I Y P  A     +AD L+       P+P 
Subjt:  IEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISG-----------RLAKWAIILQ--QYDIVYIPQKAVKGQALADFLA-----DHPVPS

Query:  NWKLCDDLPDEEVLFVESM
              D  D  + FV  +
Subjt:  NWKLCDDLPDEEVLFVESM

P0CT41 Transposon Tf2-12 polyprotein6.5e-3429.15Show/hide
Query:  IFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAY
        I  +    H+ CY+DD+++ SK + +H+K +K VL +L+   L +N  KC F  +  KF+G+ +  +G       ID + +   PKN  ELR+  G + Y
Subjt:  IFDDMLHKHIECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAY

Query:  IRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELNYSP
        +R+FI   +    P   L++KD  + W  +   A ++IK+ L++PPVL      K ++L   A + ++GA+L+Q++D  K   + Y S  ++ A+LNYS 
Subjt:  IRRFISNLAGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELNYSP

Query:  IEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISG-----------RLAKWAIILQ--QYDIVYIPQKAVKGQALADFLA-----DHPVPS
         +K  LA+  ++   RHY++       +  +P K +     + G           RLA+W + LQ   ++I Y P  A     +AD L+       P+P 
Subjt:  IEKMCLALFFAIDKLRHYMQAFTIHLVAKADPVKYILSRPVISG-----------RLAKWAIILQ--QYDIVYIPQKAVKGQALADFLA-----DHPVPS

Query:  NWKLCDDLPDEEVLFVESM
              D  D  + FV  +
Subjt:  NWKLCDDLPDEEVLFVESM

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus5.0e-3432.58Show/hide
Query:  QRIFDDMLHKHI----ECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRL
        QR+ DD+L +HI      Y+DD++V S+    H K+L+ VL  L K  L++N  K  F  T  +FLG+IV   GI+ D  K+ AI +MP P ++ EL+R 
Subjt:  QRIFDDMLHKHI----ECYVDDLVVKSKKKCDHLKDLK-VLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRL

Query:  QGRLAYIRRFISNLAGRCQPFQRLMR-----------KDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECA
         G  +Y R+FI + A   +P   L R                  D++   +F+ +K  L +  +L+ P   KP  L   A   ++GA+L+Q+ D+G++  
Subjt:  QGRLAYIRRFISNLAGRCQPFQRLMR-----------KDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECA

Query:  LYYLSRTLTGAELNYSPIEKMCLALFFAIDKLRHYMQ-AFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQY--DIVYIPQKAVKGQALADFLADHPV
        + Y+SR+L   E NY+ IEK  LA+ +++D LR Y+  A TI +     P+ + L     + +L +W   +++Y  +++Y P K+     +AD L+  P 
Subjt:  LYYLSRTLTGAELNYSPIEKMCLALFFAIDKLRHYMQ-AFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQY--DIVYIPQKAVKGQALADFLADHPV

Query:  PSNWKLCDDL
          N +L  DL
Subjt:  PSNWKLCDDL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGGATCTTTGATGATATGTTGCATAAACACATTGAATGTTATGTTGACGATCTCGTAGTCAAGTCCAAGAAGAAATGCGATCACTTGAAAGACCTAAAGGTACT
TGATCGCCTCAGAAAATATCAACTAAGAATGAACCCTCTCAAGTGTGCATTTGGTGTAACTTCAGGGAAGTTTTTGGGATTTATAGTGAGACATCGCGGCATCGAAGTTG
ATCACTCAAAAATTGATGCTATCCAGAAGATGCCAAGTCCGAAGAACCTGCACGAATTGAGACGATTGCAAGGTCGCTTGGCTTACATTAGAAGGTTTATATCTAATCTT
GCAGGTCGATGTCAACCATTCCAGAGACTAATGAGGAAGGATGCAGTCTTTGATTGGGACCAGTCATGCCAAAATGCATTTGATAGCATAAAGAAGTATCTGCTCAACCC
TCCGGTCTTAAGTGCGCCTGCAACTGGAAAACCATTAATATTGTATATTGCGGCTCAAGAGACTTCACTCGGGGCATTACTTGCACAAGAAAATGATAAGGGTAAGGAAT
GCGCACTCTACTATCTAAGTAGAACTCTGACAGGAGCTGAATTAAATTATTCTCCAATTGAAAAAATGTGTCTCGCCCTCTTCTTTGCAATAGATAAACTGAGACATTAT
ATGCAAGCCTTCACTATACACTTGGTGGCAAAAGCTGATCCTGTCAAATATATATTATCAAGGCCAGTCATCTCGGGACGCCTCGCGAAGTGGGCTATTATACTCCAACA
ATACGACATTGTATATATCCCCCAAAAAGCAGTAAAGGGCCAAGCATTAGCAGATTTCCTGGCTGATCATCCAGTTCCATCAAATTGGAAGTTATGTGACGACTTACCTG
ATGAGGAAGTATTGTTTGTTGAAAGCATGGAGCCTTGGATCATGTTCTTTGATGGTGCGGCACGAAGAAGTGGAGCTGGTGTTGGCATTGTCTTCATTTCTCCTGAGAAA
CATATGTTGCCATATAGCTTCACACTCGGTGAATTGTGTTCAAATAATGTTGCCGAGTACCAAGCCTTCATTATCGGTCTCCAAATGGCTTCAGAATTTGGGATAAGTGC
ATAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGGATCTTTGATGATATGTTGCATAAACACATTGAATGTTATGTTGACGATCTCGTAGTCAAGTCCAAGAAGAAATGCGATCACTTGAAAGACCTAAAGGTACT
TGATCGCCTCAGAAAATATCAACTAAGAATGAACCCTCTCAAGTGTGCATTTGGTGTAACTTCAGGGAAGTTTTTGGGATTTATAGTGAGACATCGCGGCATCGAAGTTG
ATCACTCAAAAATTGATGCTATCCAGAAGATGCCAAGTCCGAAGAACCTGCACGAATTGAGACGATTGCAAGGTCGCTTGGCTTACATTAGAAGGTTTATATCTAATCTT
GCAGGTCGATGTCAACCATTCCAGAGACTAATGAGGAAGGATGCAGTCTTTGATTGGGACCAGTCATGCCAAAATGCATTTGATAGCATAAAGAAGTATCTGCTCAACCC
TCCGGTCTTAAGTGCGCCTGCAACTGGAAAACCATTAATATTGTATATTGCGGCTCAAGAGACTTCACTCGGGGCATTACTTGCACAAGAAAATGATAAGGGTAAGGAAT
GCGCACTCTACTATCTAAGTAGAACTCTGACAGGAGCTGAATTAAATTATTCTCCAATTGAAAAAATGTGTCTCGCCCTCTTCTTTGCAATAGATAAACTGAGACATTAT
ATGCAAGCCTTCACTATACACTTGGTGGCAAAAGCTGATCCTGTCAAATATATATTATCAAGGCCAGTCATCTCGGGACGCCTCGCGAAGTGGGCTATTATACTCCAACA
ATACGACATTGTATATATCCCCCAAAAAGCAGTAAAGGGCCAAGCATTAGCAGATTTCCTGGCTGATCATCCAGTTCCATCAAATTGGAAGTTATGTGACGACTTACCTG
ATGAGGAAGTATTGTTTGTTGAAAGCATGGAGCCTTGGATCATGTTCTTTGATGGTGCGGCACGAAGAAGTGGAGCTGGTGTTGGCATTGTCTTCATTTCTCCTGAGAAA
CATATGTTGCCATATAGCTTCACACTCGGTGAATTGTGTTCAAATAATGTTGCCGAGTACCAAGCCTTCATTATCGGTCTCCAAATGGCTTCAGAATTTGGGATAAGTGC
ATAG
Protein sequenceShow/hide protein sequence
MQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNL
AGRCQPFQRLMRKDAVFDWDQSCQNAFDSIKKYLLNPPVLSAPATGKPLILYIAAQETSLGALLAQENDKGKECALYYLSRTLTGAELNYSPIEKMCLALFFAIDKLRHY
MQAFTIHLVAKADPVKYILSRPVISGRLAKWAIILQQYDIVYIPQKAVKGQALADFLADHPVPSNWKLCDDLPDEEVLFVESMEPWIMFFDGAARRSGAGVGIVFISPEK
HMLPYSFTLGELCSNNVAEYQAFIIGLQMASEFGISA