; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0220911 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0220911
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionIntegrase
Genome locationCMiso1.1chr08:8760515..8761522
RNA-Seq ExpressionCmc08g0220911
SyntenyCmc08g0220911
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003729 - mRNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025311.1 integrase [Cucumis melo var. makuwa]4.2e-186100Show/hide
Query:  MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE
        MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE
Subjt:  MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE

Query:  KCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIY
        KCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIY
Subjt:  KCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIY

Query:  NTTNRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYE
        NTTNRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYE
Subjt:  NTTNRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYE

Query:  EIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF
        EIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF
Subjt:  EIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF

TYJ95504.1 integrase [Cucumis melo var. makuwa]2.6e-17594.63Show/hide
Query:  MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE
        MTARMTPQQNGVAERKN+TIMEMARSMLKAK LPNEF GD VAC VYILNR PTKSVP MTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE
Subjt:  MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE

Query:  KCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIY
        KCIMVGYSENSKAYRLY PVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDEN+VAQELEQAEIQAVESSSSSTSSSTS+DEISPRRMRSIQEIY
Subjt:  KCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIY

Query:  NTTNRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYE
        NTTNRINDDHFANFALF GVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWEL ELPTNKQALGVK VY+TKLKSDGNVE YKARLVVKGYKQEYGVDYE
Subjt:  NTTNRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYE

Query:  EIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF
        EIFA V RIETIRLILSL AQNGWKVYQMDVKSAF
Subjt:  EIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF

TYJ98761.1 integrase [Cucumis melo var. makuwa]2.6e-17594.63Show/hide
Query:  MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE
        MTARMTPQQNGVAERKN+TIMEMARSMLKAK LPNEF GD VAC VYILNR PTKSVP MTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE
Subjt:  MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE

Query:  KCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIY
        KCIMVGYSENSKAYRLY PVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDEN+VAQELEQAEIQAVESSSSSTSSSTS+DEISPRRMRSIQEIY
Subjt:  KCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIY

Query:  NTTNRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYE
        NTTNRINDDHFANFALF GVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWEL ELPTNKQALGVK VY+TKLKSDGNVE YKARLVVKGYKQEYGVDYE
Subjt:  NTTNRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYE

Query:  EIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF
        EIFA V RIETIRLILSL AQNGWKVYQMDVKSAF
Subjt:  EIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF

TYK24556.1 integrase [Cucumis melo var. makuwa]2.6e-17594.63Show/hide
Query:  MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE
        MTARMTPQQNGVAERKN+TIMEMARSMLKAK LPNEF GD VAC VYILNR PTKSVP MTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE
Subjt:  MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE

Query:  KCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIY
        KCIMVGYSENSKAYRLY PVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDEN+VAQELEQAEIQAVESSSSSTSSSTS+DEISPRRMRSIQEIY
Subjt:  KCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIY

Query:  NTTNRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYE
        NTTNRINDDHFANFALF GVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWEL ELPTNKQALGVK VY+TKLKSDGNVE YKARLVVKGYKQEYGVDYE
Subjt:  NTTNRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYE

Query:  EIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF
        EIFA V RIETIRLILSL AQNGWKVYQMDVKSAF
Subjt:  EIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF

TYK30104.1 integrase [Cucumis melo var. makuwa]2.6e-17594.63Show/hide
Query:  MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE
        MTARMTPQQNGVAERKN+TIMEMARSMLKAK LPNEF GD VAC VYILNR PTKSVP MTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE
Subjt:  MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE

Query:  KCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIY
        KCIMVGYSENSKAYRLY PVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDEN+VAQELEQAEIQAVESSSSSTSSSTS+DEISPRRMRSIQEIY
Subjt:  KCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIY

Query:  NTTNRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYE
        NTTNRINDDHFANFALF GVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWEL ELPTNKQALGVK VY+TKLKSDGNVE YKARLVVKGYKQEYGVDYE
Subjt:  NTTNRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYE

Query:  EIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF
        EIFA V RIETIRLILSL AQNGWKVYQMDVKSAF
Subjt:  EIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF

TrEMBL top hitse value%identityAlignment
A0A5A7SM37 Integrase2.0e-186100Show/hide
Query:  MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE
        MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE
Subjt:  MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE

Query:  KCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIY
        KCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIY
Subjt:  KCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIY

Query:  NTTNRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYE
        NTTNRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYE
Subjt:  NTTNRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYE

Query:  EIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF
        EIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF
Subjt:  EIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF

A0A5D3BJ80 Integrase1.2e-17594.63Show/hide
Query:  MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE
        MTARMTPQQNGVAERKN+TIMEMARSMLKAK LPNEF GD VAC VYILNR PTKSVP MTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE
Subjt:  MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE

Query:  KCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIY
        KCIMVGYSENSKAYRLY PVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDEN+VAQELEQAEIQAVESSSSSTSSSTS+DEISPRRMRSIQEIY
Subjt:  KCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIY

Query:  NTTNRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYE
        NTTNRINDDHFANFALF GVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWEL ELPTNKQALGVK VY+TKLKSDGNVE YKARLVVKGYKQEYGVDYE
Subjt:  NTTNRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYE

Query:  EIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF
        EIFA V RIETIRLILSL AQNGWKVYQMDVKSAF
Subjt:  EIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF

A0A5D3CLV1 Integrase1.2e-17594.63Show/hide
Query:  MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE
        MTARMTPQQNGVAERKN+TIMEMARSMLKAK LPNEF GD VAC VYILNR PTKSVP MTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE
Subjt:  MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE

Query:  KCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIY
        KCIMVGYSENSKAYRLY PVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDEN+VAQELEQAEIQAVESSSSSTSSSTS+DEISPRRMRSIQEIY
Subjt:  KCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIY

Query:  NTTNRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYE
        NTTNRINDDHFANFALF GVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWEL ELPTNKQALGVK VY+TKLKSDGNVE YKARLVVKGYKQEYGVDYE
Subjt:  NTTNRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYE

Query:  EIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF
        EIFA V RIETIRLILSL AQNGWKVYQMDVKSAF
Subjt:  EIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF

A0A5D3DLN8 Integrase1.2e-17594.63Show/hide
Query:  MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE
        MTARMTPQQNGVAERKN+TIMEMARSMLKAK LPNEF GD VAC VYILNR PTKSVP MTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE
Subjt:  MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE

Query:  KCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIY
        KCIMVGYSENSKAYRLY PVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDEN+VAQELEQAEIQAVESSSSSTSSSTS+DEISPRRMRSIQEIY
Subjt:  KCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIY

Query:  NTTNRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYE
        NTTNRINDDHFANFALF GVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWEL ELPTNKQALGVK VY+TKLKSDGNVE YKARLVVKGYKQEYGVDYE
Subjt:  NTTNRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYE

Query:  EIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF
        EIFA V RIETIRLILSL AQNGWKVYQMDVKSAF
Subjt:  EIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF

A0A5D3E2J1 Integrase1.2e-17594.63Show/hide
Query:  MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE
        MTARMTPQQNGVAERKN+TIMEMARSMLKAK LPNEF GD VAC VYILNR PTKSVP MTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE
Subjt:  MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSE

Query:  KCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIY
        KCIMVGYSENSKAYRLY PVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDEN+VAQELEQAEIQAVESSSSSTSSSTS+DEISPRRMRSIQEIY
Subjt:  KCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIY

Query:  NTTNRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYE
        NTTNRINDDHFANFALF GVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWEL ELPTNKQALGVK VY+TKLKSDGNVE YKARLVVKGYKQEYGVDYE
Subjt:  NTTNRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYE

Query:  EIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF
        EIFA V RIETIRLILSL AQNGWKVYQMDVKSAF
Subjt:  EIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF

SwissProt top hitse value%identityAlignment
P04146 Copia protein1.5e-4030.75Show/hide
Query:  MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPD--MTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDK
        +T   TPQ NGV+ER  +TI E AR+M+    L   F G+ V    Y++NR P++++ D   TPYE W  +KP + HLRVFG+  Y HI N+ +GK DDK
Subjt:  MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPD--MTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDK

Query:  SEKCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWN---------WNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEIS
        S K I VGY  N   ++L+  V+ K I++RDV+  E    N         +  D  E+++    N D  K+ Q     E +  ++      S  S+++  
Subjt:  SEKCIMVGYSENSKAYRLYKPVSRKIIISRDVIFSEDESWN---------WNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEIS

Query:  PRRMRSIQE--------------------------IYNTTNRINDDHF-----------------ANFALFVGVD-------------------------
        P   R I +                          +  +  R  DDH                  A     +G+D                         
Subjt:  PRRMRSIQE--------------------------IYNTTNRINDDHF-----------------ANFALFVGVD-------------------------

Query:  ----------------------PVTFDE-AIQDEK--WKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYG
                              P +FDE   +D+K  W+ A++ E++A + N TW + + P NK  +  + V+  K    GN   YKARLV +G+ Q+Y 
Subjt:  ----------------------PVTFDE-AIQDEK--WKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYG

Query:  VDYEEIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF
        +DYEE FA V RI + R ILSLV Q   KV+QMDVK+AF
Subjt:  VDYEEIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.7e-5034.71Show/hide
Query:  TPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSEKCIMV
        TPQ NGVAER N+TI+E  RSML+   LP  F G+ V    Y++NR P+  +    P   W  ++ S SHL+VFG  A++H+P + R KLDDKS  CI +
Subjt:  TPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSEKCIMV

Query:  GYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMR-----------
        GY +    YRL+ PV +K+I SRDV+F E E     D  ++ K+    N              +    +S++ TS+ ++ DE+S +  +           
Subjt:  GYSENSKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMR-----------

Query:  --SIQEIYNTTN--------------RINDDHFANFALFVGVD---PVTFDEAI-QDEKWKI--AMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTK
           ++E+ + T               R+    + +    +  D   P +  E +   EK ++  AM +E++++++N T++L ELP  K+ L  K V+K K
Subjt:  --SIQEIYNTTN--------------RINDDHFANFALFVGVD---PVTFDEAI-QDEKWKI--AMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTK

Query:  LKSDGNVENYKARLVVKGYKQEYGVDYEEIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF
           D  +  YKARLVVKG++Q+ G+D++EIF+ V+++ +IR ILSL A    +V Q+DVK+AF
Subjt:  LKSDGNVENYKARLVVKGYKQEYGVDYEEIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF

P92520 Uncharacterized mitochondrial protein AtMg008201.0e-1740.68Show/hide
Query:  NRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYEEIF
        N++N  +       +  +P +   A++D  W  AM +E+DA+ RN+TW L   P N+  LG K V+KTKL SDG ++  KARLV KG+ QE G+ + E +
Subjt:  NRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYEEIF

Query:  ALVIRIETIRLILSLVAQ
        + V+R  TIR IL++  Q
Subjt:  ALVIRIETIRLILSLVAQ

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE16.8e-3025.61Show/hide
Query:  TPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSEKCIMV
        TP+ NG++ERK++ I+E   ++L    +P  +     A  VY++NR PT  +   +P++   G  P+   LRVFG   Y  +    + KLDDKS +C+ +
Subjt:  TPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSEKCIMV

Query:  GYSENSKAYRLYKPVSRKIIISRDVIFSE--------------------DESWNWND-----------DVDEAKSPFHV-------------------NI
        GYS    AY      + ++ ISR V F E                    + S  W+                   P H                    N+
Subjt:  GYSENSKAYRLYKPVSRKIIISRDVIFSE--------------------DESWNWND-----------DVDEAKSPFHV-------------------NI

Query:  DE---------------------------------------------NKVAQELEQAEIQAVESSSSS----TSSSTSDDEISPRRM-----RSIQEIYN
        D                                              N+   +L Q+     +SSSSS    TS+S+S    +P  +       + +I N
Subjt:  DE---------------------------------------------NKVAQELEQAEIQAVESSSSS----TSSSTSDDEISPRRM-----RSIQEIYN

Query:  TTNRI------------------NDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWEL-RELPTNKQALGVKLVYKTKLKSDGNVENY
          N+                   N  +    +L    +P T  +A++DE+W+ AM  EI+A   N TW+L    P++   +G + ++  K  SDG++  Y
Subjt:  TTNRI------------------NDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWEL-RELPTNKQALGVKLVYKTKLKSDGNVENY

Query:  KARLVVKGYKQEYGVDYEEIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF
        KARLV KGY Q  G+DY E F+ VI+  +IR++L +     W + Q+DV +AF
Subjt:  KARLVVKGYKQEYGVDYEEIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE29.2e-2723.85Show/hide
Query:  TPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSEKCIMV
        TP+ NG++ERK++ I+EM  ++L    +P  +     +  VY++NR PT  +   +P++   G+ P+   L+VFG   Y  +    R KL+DKS++C  +
Subjt:  TPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSEKCIMV

Query:  GYSENSKAYRLYKPVSRKIIISRDVIFSE--------------------DESWNWNDDVDEAKSPF----------HVNIDENKVAQELEQAEIQAVESS
        GYS    AY      + ++  SR V F E                    D + NW        +P           H++      +        Q   S+
Subjt:  GYSENSKAYRLYKPVSRKIIISRDVIFSE--------------------DESWNWNDDVDEAKSPF----------HVNIDENKVAQELEQAEIQAVESS

Query:  --SSSTSSSTSDDEISP--------------RRMRSIQEIYNTTN-------------------------------------------------------
          SSS SS +S +  +P              +   S   I N  N                                                       
Subjt:  --SSSTSSSTSDDEISP--------------RRMRSIQEIYNTTN-------------------------------------------------------

Query:  -------------------------RINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWEL-RELPTNKQALGVKLVYKTKLKSDGN
                                 + N  +    +L    +P T  +A++D++W+ AM  EI+A   N TW+L    P +   +G + ++  K  SDG+
Subjt:  -------------------------RINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWEL-RELPTNKQALGVKLVYKTKLKSDGN

Query:  VENYKARLVVKGYKQEYGVDYEEIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF
        +  YKARLV KGY Q  G+DY E F+ VI+  +IR++L +     W + Q+DV +AF
Subjt:  VENYKARLVVKGYKQEYGVDYEEIFALVIRIETIRLILSLVAQNGWKVYQMDVKSAF

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 86.3e-2344.35Show/hide
Query:  DPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYEEIFALVIRIETIRLILSLVA
        +P T++EA +   W  AMD EI A+    TWE+  LP NK+ +G K VYK K  SDG +E YKARLV KGY Q+ G+D+ E F+ V ++ +++LIL++ A
Subjt:  DPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYEEIFALVIRIETIRLILSLVA

Query:  QNGWKVYQMDVKSAF
           + ++Q+D+ +AF
Subjt:  QNGWKVYQMDVKSAF

ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.8e-0937.65Show/hide
Query:  NKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSEK
        N+TI+E  RSML    LP  F  D     V+I+N+ P+ ++    P E W    P+ S+LR FG +AY H      GKL  +++K
Subjt:  NKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSEK

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)7.3e-1940.68Show/hide
Query:  NRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYEEIF
        N++N  +       +  +P +   A++D  W  AM +E+DA+ RN+TW L   P N+  LG K V+KTKL SDG ++  KARLV KG+ QE G+ + E +
Subjt:  NRINDDHFANFALFVGVDPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYEEIF

Query:  ALVIRIETIRLILSLVAQ
        + V+R  TIR IL++  Q
Subjt:  ALVIRIETIRLILSLVAQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGCTCGAATGACTCCACAGCAAAATGGAGTTGCAGAACGAAAAAATAAAACAATCATGGAAATGGCGAGAAGTATGCTAAAAGCAAAAATTCTGCCAAACGAATT
TTTGGGAGATGTTGTTGCATGTATTGTTTACATTCTAAATCGAGGTCCAACAAAGAGTGTTCCAGATATGACTCCTTATGAAGCATGGTGTGGTGAGAAACCATCTGTTA
GTCATTTGAGAGTGTTTGGGAGTATAGCTTATTCTCATATTCCAAATCAGCTAAGAGGCAAGCTTGATGATAAATCTGAAAAATGCATTATGGTAGGTTATAGTGAAAAT
TCTAAAGCTTATCGATTGTATAAACCTGTGTCAAGAAAAATTATTATCAGCAGAGATGTGATTTTCAGTGAAGATGAATCATGGAACTGGAATGACGACGTTGATGAAGC
TAAAAGTCCATTTCATGTTAATATAGATGAAAATAAAGTTGCTCAAGAATTAGAGCAAGCGGAAATTCAAGCGGTAGAGTCATCTTCGTCCTCAACGTCATCTTCCACAA
GTGATGATGAAATCTCACCAAGGAGAATGAGGAGTATTCAAGAAATTTATAATACCACTAACAGGATTAATGACGATCATTTTGCTAATTTTGCATTGTTTGTTGGTGTT
GATCCTGTAACTTTTGATGAAGCCATCCAAGATGAGAAATGGAAGATTGCAATGGATCAAGAAATTGATGCAATAAGAAGAAATGAAACATGGGAGTTGAGGGAGCTTCC
GACAAACAAACAAGCTCTTGGAGTAAAATTGGTGTACAAAACAAAGTTGAAGTCAGATGGTAATGTTGAAAATTACAAGGCAAGACTTGTTGTAAAAGGCTACAAGCAGG
AATATGGTGTGGATTATGAAGAAATATTTGCCCTTGTGATAAGAATTGAGACCATTCGATTGATTTTGTCATTAGTTGCTCAAAATGGATGGAAAGTTTATCAAATGGAT
GTAAAATCCGCTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAGCTCGAATGACTCCACAGCAAAATGGAGTTGCAGAACGAAAAAATAAAACAATCATGGAAATGGCGAGAAGTATGCTAAAAGCAAAAATTCTGCCAAACGAATT
TTTGGGAGATGTTGTTGCATGTATTGTTTACATTCTAAATCGAGGTCCAACAAAGAGTGTTCCAGATATGACTCCTTATGAAGCATGGTGTGGTGAGAAACCATCTGTTA
GTCATTTGAGAGTGTTTGGGAGTATAGCTTATTCTCATATTCCAAATCAGCTAAGAGGCAAGCTTGATGATAAATCTGAAAAATGCATTATGGTAGGTTATAGTGAAAAT
TCTAAAGCTTATCGATTGTATAAACCTGTGTCAAGAAAAATTATTATCAGCAGAGATGTGATTTTCAGTGAAGATGAATCATGGAACTGGAATGACGACGTTGATGAAGC
TAAAAGTCCATTTCATGTTAATATAGATGAAAATAAAGTTGCTCAAGAATTAGAGCAAGCGGAAATTCAAGCGGTAGAGTCATCTTCGTCCTCAACGTCATCTTCCACAA
GTGATGATGAAATCTCACCAAGGAGAATGAGGAGTATTCAAGAAATTTATAATACCACTAACAGGATTAATGACGATCATTTTGCTAATTTTGCATTGTTTGTTGGTGTT
GATCCTGTAACTTTTGATGAAGCCATCCAAGATGAGAAATGGAAGATTGCAATGGATCAAGAAATTGATGCAATAAGAAGAAATGAAACATGGGAGTTGAGGGAGCTTCC
GACAAACAAACAAGCTCTTGGAGTAAAATTGGTGTACAAAACAAAGTTGAAGTCAGATGGTAATGTTGAAAATTACAAGGCAAGACTTGTTGTAAAAGGCTACAAGCAGG
AATATGGTGTGGATTATGAAGAAATATTTGCCCTTGTGATAAGAATTGAGACCATTCGATTGATTTTGTCATTAGTTGCTCAAAATGGATGGAAAGTTTATCAAATGGAT
GTAAAATCCGCTTTTTGA
Protein sequenceShow/hide protein sequence
MTARMTPQQNGVAERKNKTIMEMARSMLKAKILPNEFLGDVVACIVYILNRGPTKSVPDMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSEKCIMVGYSEN
SKAYRLYKPVSRKIIISRDVIFSEDESWNWNDDVDEAKSPFHVNIDENKVAQELEQAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIYNTTNRINDDHFANFALFVGV
DPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELRELPTNKQALGVKLVYKTKLKSDGNVENYKARLVVKGYKQEYGVDYEEIFALVIRIETIRLILSLVAQNGWKVYQMD
VKSAF