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Cmc08g0221061 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0221061
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr08:8912263..8912535
RNA-Seq ExpressionCmc08g0221061
SyntenyCmc08g0221061
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0043227 - membrane-bounded organelle (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008194 - UDP-glycosyltransferase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031437.1 pol protein [Cucumis melo var. makuwa]2.1e-3998.81Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDG MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
KAA0033508.1 gag protease polyprotein [Cucumis melo var. makuwa]1.6e-3995.4Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLSGD
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDG MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL  +
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLSGD
KAA0035480.1 pol protein [Cucumis melo var. makuwa]2.1e-3998.81Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDG MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
KAA0036671.1 gag protease polyprotein [Cucumis melo var. makuwa]2.1e-3998.81Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDG MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
TYK26818.1 gag protease polyprotein [Cucumis melo var. makuwa]1.6e-3995.4Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLSGD
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDG MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL  +
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLSGD
TrEMBL top hitse value%identityAlignment
A0A5A7SSG1 Gag protease polyprotein7.7e-4095.4Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLSGD
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDG MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL  +
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLSGD
A0A5A7UBS1 Reverse transcriptase1.0e-3998.81Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDG MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
A0A5D3C4W8 Ty3-gypsy retrotransposon protein1.0e-3998.81Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDG MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
A0A5D3CQB5 Reverse transcriptase1.0e-3998.81Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDG MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
A0A5D3DTG5 Gag protease polyprotein7.7e-4095.4Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLSGD
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDG MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL  +
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLSGD
SwissProt top hitse value%identityAlignment
P0CT41 Transposon Tf2-12 polyprotein9.1e-1439.29Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
        + P +++ +  ++ + L  G IR S +    PV+FV KK+G +R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
P10394 Retrovirus-related Pol polyprotein from transposon 4122.4e-1442.53Show/hide
Query:  AELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGP------MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
        ++++E++ Q+Q+L+    + PSVS + +P+L V KK  P       RL IDYR++NK  + +++PLPRIDD+ DQL  A  FS +DL
Subjt:  AELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGP------MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein4.0e-1750Show/hide
Query:  KELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
        +E+   +Q+LLD  FI PS SP  +PV+ V KKDG  RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+ +DL
Subjt:  KELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
Q99315 Transposon Ty3-G Gag-Pol polyprotein4.0e-1750Show/hide
Query:  KELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
        +E+   +Q+LLD  FI PS SP  +PV+ V KKDG  RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+ +DL
Subjt:  KELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
Q9UR07 Transposon Tf2-11 polyprotein9.1e-1439.29Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
        + P +++ +  ++ + L  G IR S +    PV+FV KK+G +R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL
Arabidopsis top hitse value%identityAlignment
ATMG00850.1 DNA/RNA polymerases superfamily protein6.7e-0454.55Show/hide
Query:  LKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDG
        LK  L E+L+   I+PS+SP+ +PVL V+KKDG
Subjt:  LKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCCCGCAGAATTGAAAGAACTGAAGGTACAGTTACAGGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTCTTATTCGTTAA
GAAGAAGGATGGGCCGATGCGTCTATGCATTGACTATAGGGAGTTGAACAAAGTAACCGTAAAGAACAGATATCCCTTGCCCAGGATTGACGATCTATTTGACCAGTTAC
AGGGAGCCACAGTGTTCTCTAAGATTGATCTTTCGGGGGATACCATCAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCCCCGCAGAATTGAAAGAACTGAAGGTACAGTTACAGGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTCTTATTCGTTAA
GAAGAAGGATGGGCCGATGCGTCTATGCATTGACTATAGGGAGTTGAACAAAGTAACCGTAAAGAACAGATATCCCTTGCCCAGGATTGACGATCTATTTGACCAGTTAC
AGGGAGCCACAGTGTTCTCTAAGATTGATCTTTCGGGGGATACCATCAGCTGA
Protein sequenceShow/hide protein sequence
MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLSGDTIS