CuGenDBv2

Gene ID	Cmc08g0221441
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	RNA polymerase sigma factor sigF, chloroplastic
Genome location	CMiso1.1chr08:9215669..9217425
RNA-Seq Expression	Cmc08g0221441
Synteny	Cmc08g0221441
Gene Ontology terms	GO:0071482 - cellular response to light stimulus (biological process) GO:2000142 - regulation of DNA-templated transcription, initiation (biological process) GO:0003677 - DNA binding (molecular function) GO:0016987 - sigma factor activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0063818.1 RNA polymerase sigma factor sigF [Cucumis melo var. makuwa]

2.3e-86

100

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Query:  MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW
        MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW
Subjt:  MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW

Query:  NNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP
        NNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP
Subjt:  NNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP

TYK07304.1 RNA polymerase sigma factor sigF [Cucumis melo var. makuwa]

2.3e-86

100

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Query:  MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW
        MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW
Subjt:  MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW

Query:  NNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP
        NNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP
Subjt:  NNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP

XP_016902883.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis melo]

2.3e-86

100

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Query:  MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW
        MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW
Subjt:  MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW

Query:  NNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP
        NNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP
Subjt:  NNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP

XP_016902885.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Cucumis melo]

1.1e-83

98.09

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Query:  MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW
        MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW
Subjt:  MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW

Query:  NNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP
        NNPSSRKY  +NDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP
Subjt:  NNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP

XP_031742503.1 OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 12 isoform X2 [Cucumis sativus]

4.0e-78

92.55

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Query:  MVMNDYDSDAIRWGLRFF----NGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKF
        MVMNDYDSDAIRWGLRFF    NGD NGDMPYSTEYLP TAQ DVNFYEHYYGN+ NNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPS ASKF
Subjt:  MVMNDYDSDAIRWGLRFF----NGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKF

Query:  ALGWNNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP
        ALGWNNPSSR YSSENDSVEDEVETVEPSSSCSSPGQ DNYYPYGHDNQVDWRMDQMIPAP
Subjt:  ALGWNNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KIE6 OTU domain-containing protein

1.9e-78

92.55

Show/hide

Query:  MVMNDYDSDAIRWGLRFF----NGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKF
        MVMNDYDSDAIRWGLRFF    NGD NGDMPYSTEYLP TAQ DVNFYEHYYGN+ NNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPS ASKF
Subjt:  MVMNDYDSDAIRWGLRFF----NGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKF

Query:  ALGWNNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP
        ALGWNNPSSR YSSENDSVEDEVETVEPSSSCSSPGQ DNYYPYGHDNQVDWRMDQMIPAP
Subjt:  ALGWNNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP

A0A1S4E3S8 RNA polymerase sigma factor sigF, chloroplastic isoform X1

1.1e-86

100

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Query:  MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW
        MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW
Subjt:  MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW

Query:  NNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP
        NNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP
Subjt:  NNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP

A0A1S4E4I4 RNA polymerase sigma factor sigF, chloroplastic isoform X2

5.3e-84

98.09

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Query:  MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW
        MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW
Subjt:  MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW

Query:  NNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP
        NNPSSRKY  +NDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP
Subjt:  NNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP

A0A5A7V893 RNA polymerase sigma factor sigF

1.1e-86

100

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Query:  MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW
        MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW
Subjt:  MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW

Query:  NNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP
        NNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP
Subjt:  NNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP

A0A5D3C7T8 RNA polymerase sigma factor sigF

1.1e-86

100

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Query:  MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW
        MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW
Subjt:  MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGW

Query:  NNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP
        NNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP
Subjt:  NNPSSRKYSSENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAP

SwissProt top hits

e value

%identity

Alignment

Q9LZF7 OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 10

1.9e-06

29.19

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Query:  MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEH------YYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNV------E
        MV ++ ++  + W   F         PY  E +    +  V  + H      YY  + ++  ++V+NDEIIA TLQ++F QLEIAE++ YS+       +
Subjt:  MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEH------YYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNV------E

Query:  DPSHASKFA-----LGWNNPS-SRKYSSE---NDSVED-EVETVEPSSSCSSPGQEDNYYPYGHDNQVD------WRMDQMIPAP
           + + ++       WN+ S +  YSSE   ND+ +D   +      SCSSP   D Y      +Q D       R++QM+P P
Subjt:  DPSHASKFA-----LGWNNPS-SRKYSSE---NDSVED-EVETVEPSSSCSSPGQEDNYYPYGHDNQVD------WRMDQMIPAP

Arabidopsis top hits

e value

%identity

Alignment

AT5G03330.1 Cysteine proteinases superfamily protein

1.4e-07

29.19

Show/hide

Query:  MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEH------YYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNV------E
        MV ++ ++  + W   F         PY  E +    +  V  + H      YY  + ++  ++V+NDEIIA TLQ++F QLEIAE++ YS+       +
Subjt:  MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEH------YYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNV------E

Query:  DPSHASKFA-----LGWNNPS-SRKYSSE---NDSVED-EVETVEPSSSCSSPGQEDNYYPYGHDNQVD------WRMDQMIPAP
           + + ++       WN+ S +  YSSE   ND+ +D   +      SCSSP   D Y      +Q D       R++QM+P P
Subjt:  DPSHASKFA-----LGWNNPS-SRKYSSE---NDSVED-EVETVEPSSSCSSPGQEDNYYPYGHDNQVD------WRMDQMIPAP

AT5G03330.2 Cysteine proteinases superfamily protein

1.4e-07

29.19

Show/hide

Query:  MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEH------YYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNV------E
        MV ++ ++  + W   F         PY  E +    +  V  + H      YY  + ++  ++V+NDEIIA TLQ++F QLEIAE++ YS+       +
Subjt:  MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEH------YYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNV------E

Query:  DPSHASKFA-----LGWNNPS-SRKYSSE---NDSVED-EVETVEPSSSCSSPGQEDNYYPYGHDNQVD------WRMDQMIPAP
           + + ++       WN+ S +  YSSE   ND+ +D   +      SCSSP   D Y      +Q D       R++QM+P P
Subjt:  DPSHASKFA-----LGWNNPS-SRKYSSE---NDSVED-EVETVEPSSSCSSPGQEDNYYPYGHDNQVD------WRMDQMIPAP

Sequences

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CDS sequence

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ATGGTCATGAACGATTATGATTCTGATGCGATTCGTTGGGGTCTTCGTTTTTTCAACGGGGACTTAAATGGGGACATGCCGTATAGTACCGAGTACTTGCCTGTCACGGC
ACAACAGGATGTCAATTTCTATGAGCATTATTATGGAAATCATTGCAATAATGAGGTTAACAATGTGGAGAACGACGAAATTATTGCACACACTCTTCAGGAGGAGTTTT
CCCAATTAGAAATTGCAGAGGCCTCAGGATATTCAAATGTAGAAGATCCATCCCATGCATCGAAGTTTGCGCTTGGTTGGAACAATCCATCCTCGAGGAAATACAGTTCA
GAAAATGATTCTGTTGAAGATGAAGTTGAAACTGTGGAGCCTTCTAGTTCATGTTCTAGTCCAGGTCAAGAGGATAATTACTATCCATATGGGCATGATAATCAAGTAGA
TTGGAGAATGGATCAAATGATTCCAGCACCTGACTTGTGA

mRNA sequence

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TTTTGTCGTCGTCATCAATTGCATCCGTATGCAGCCTATGCTTCTTTAAATGTGCAGTCCTCCGCGACTTTCTCTTCTTTTTCTCACACATTTCTTCGATAGGAAGCTTC
ATCCTTAAACCTCCTTGATCGCTTTCCCCTTTGATTCAACTGCCGGTGAGATTTCAGAGGTCTCTGGTAGAGGTGGAGAAACTACCTTTAACTTGTGTAGTTGTTACGAG
AAGATGGTCATGAACGATTATGATTCTGATGCGATTCGTTGGGGTCTTCGTTTTTTCAACGGGGACTTAAATGGGGACATGCCGTATAGTACCGAGTACTTGCCTGTCAC
GGCACAACAGGATGTCAATTTCTATGAGCATTATTATGGAAATCATTGCAATAATGAGGTTAACAATGTGGAGAACGACGAAATTATTGCACACACTCTTCAGGAGGAGT
TTTCCCAATTAGAAATTGCAGAGGCCTCAGGATATTCAAATGTAGAAGATCCATCCCATGCATCGAAGTTTGCGCTTGGTTGGAACAATCCATCCTCGAGGAAATACAGT
TCAGAAAATGATTCTGTTGAAGATGAAGTTGAAACTGTGGAGCCTTCTAGTTCATGTTCTAGTCCAGGTCAAGAGGATAATTACTATCCATATGGGCATGATAATCAAGT
AGATTGGAGAATGGATCAAATGATTCCAGCACCTGACTTGTGACTGCTGACATCTAGGAATACTCTATATCTGCTTAGAATATGGAATTGTTTTCCTCATGATTGGAAAG
TATTCTGTAATAATTTCCGTAGGTTCTTTTTTTTTTTTCTTTGGGAAATTTTGTAAGATATTGTACTATTCTTACATCATTTGTGCATTTTTATCAGTCCAGAATGGTTA
CTGGAACCTTAGGGGTATTGTACATTTGGATGCTTTCTCTGCGAACCATTGACTTGTTTATGTCCGCATTTTTGGTTCACTATTTACTTAATTTTTTGAAAGCGAAGCAA
GGGATCTTTTGAAACTGTACAGTTGCAAAAGCCGATATACTTCTCCAATTTCTGTGCTAACATAA

Protein sequence

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MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGWNNPSSRKYSS
ENDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAPDL

Cmc08g0221441 (gene) of Melon (Charmono) v1.1 genome