| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0036643.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 3.0e-77 | 89.76 | Show/hide |
Query: MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
MHDPE IVSE PVSE VDT NL CELE RRSKR+RTEKSFGPDFLSTFIVERRDEIDCNFTNL+LI ED KTYQEALNSVDS MWKEAIKSELDSL M
Subjt: MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
Query: NHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIR
NHTWELVDLPMGNKPIRCKWIFKRK KPNG IERYKARLVVVGYTQKQG+DYFDTYSPVTKITTIR
Subjt: NHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIR
|
|
| KAA0038001.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 4.3e-76 | 90.57 | Show/hide |
Query: MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
MHDPEN SIVSET VSE V+TSNLRCELELRRSKR+RTEKSF PDFLSTFIVERRDEID NFTNLYLI+EDPKTYQE LNSV+ SMWKEAIKSELDSLVM
Subjt: MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
Query: NHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPV
NHTW+LVDLPMGNKPIRC+WIFKRK KPNGS+ERYKARLVVVGYTQKQGIDYFDTYSPV
Subjt: NHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPV
|
|
| KAA0042080.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 1.8e-82 | 93.45 | Show/hide |
Query: MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
MHDPENPSIVSE PVSETVDTSNLRCELELRRSKR+RTEKSFG DFLSTFIVERRDEID NFTNLYLI+EDPKTYQEALNSVD SMWKEAI SELDSLVM
Subjt: MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
Query: NHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTL
NHTW+LVDLPM NKPIRCKWIFKRK KPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIR L
Subjt: NHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTL
|
|
| TYJ97996.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 1.7e-72 | 94.48 | Show/hide |
Query: MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
MHDPENPSIVSETPVSETV+TSNLRCELEL RSKR+RTEKSFGPDFLSTFIVERRDEIDCNFTNLYLI+EDPKTYQEALNSV+SSMWKEAIKSELDSLVM
Subjt: MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
Query: NHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYT
NHTW+LVDLPMGNKPIRCKWIFKRK KPNGSIERYK RLVVVGYT
Subjt: NHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYT
|
|
| TYK06518.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 2.2e-104 | 89.19 | Show/hide |
Query: MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
MHDPE IVSE PVSETVDT NL CELE RRSKR+RTEKSFGPDFLSTFIVERRDEIDCNFTNL+LI+EDPKTYQEALNSVDS MWKEAIKSELDSL M
Subjt: MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
Query: NHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTLIALAVIHNLLILQIDVKTTFLNGDLEEEIYMT
NHTWELVDLPMGNKPIRCKWIFKRK KPNG IERYKARLVVVGYTQKQG+DYFDTYSPVTKITTIR LIALA IHNLLI Q+DVKT FLNG+LEEEIYMT
Subjt: NHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTLIALAVIHNLLILQIDVKTTFLNGDLEEEIYMT
Query: QPEGFKISGQENKVCK-RESPY
QPEGFKISGQENKVCK R+S Y
Subjt: QPEGFKISGQENKVCK-RESPY
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7T166 Ty1-copia retrotransposon protein | 1.4e-77 | 89.76 | Show/hide |
Query: MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
MHDPE IVSE PVSE VDT NL CELE RRSKR+RTEKSFGPDFLSTFIVERRDEIDCNFTNL+LI ED KTYQEALNSVDS MWKEAIKSELDSL M
Subjt: MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
Query: NHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIR
NHTWELVDLPMGNKPIRCKWIFKRK KPNG IERYKARLVVVGYTQKQG+DYFDTYSPVTKITTIR
Subjt: NHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIR
|
|
| A0A5A7T8N6 Ty1-copia retrotransposon protein | 2.1e-76 | 90.57 | Show/hide |
Query: MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
MHDPEN SIVSET VSE V+TSNLRCELELRRSKR+RTEKSF PDFLSTFIVERRDEID NFTNLYLI+EDPKTYQE LNSV+ SMWKEAIKSELDSLVM
Subjt: MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
Query: NHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPV
NHTW+LVDLPMGNKPIRC+WIFKRK KPNGS+ERYKARLVVVGYTQKQGIDYFDTYSPV
Subjt: NHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPV
|
|
| A0A5A7TFH9 Ty1-copia retrotransposon protein | 8.7e-83 | 93.45 | Show/hide |
Query: MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
MHDPENPSIVSE PVSETVDTSNLRCELELRRSKR+RTEKSFG DFLSTFIVERRDEID NFTNLYLI+EDPKTYQEALNSVD SMWKEAI SELDSLVM
Subjt: MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
Query: NHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTL
NHTW+LVDLPM NKPIRCKWIFKRK KPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIR L
Subjt: NHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTL
|
|
| A0A5D3BFX4 Ty1-copia retrotransposon protein | 8.2e-73 | 94.48 | Show/hide |
Query: MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
MHDPENPSIVSETPVSETV+TSNLRCELEL RSKR+RTEKSFGPDFLSTFIVERRDEIDCNFTNLYLI+EDPKTYQEALNSV+SSMWKEAIKSELDSLVM
Subjt: MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
Query: NHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYT
NHTW+LVDLPMGNKPIRCKWIFKRK KPNGSIERYK RLVVVGYT
Subjt: NHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYT
|
|
| A0A5D3C5T2 Ty1-copia retrotransposon protein | 1.1e-104 | 89.19 | Show/hide |
Query: MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
MHDPE IVSE PVSETVDT NL CELE RRSKR+RTEKSFGPDFLSTFIVERRDEIDCNFTNL+LI+EDPKTYQEALNSVDS MWKEAIKSELDSL M
Subjt: MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
Query: NHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTLIALAVIHNLLILQIDVKTTFLNGDLEEEIYMT
NHTWELVDLPMGNKPIRCKWIFKRK KPNG IERYKARLVVVGYTQKQG+DYFDTYSPVTKITTIR LIALA IHNLLI Q+DVKT FLNG+LEEEIYMT
Subjt: NHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTLIALAVIHNLLILQIDVKTTFLNGDLEEEIYMT
Query: QPEGFKISGQENKVCK-RESPY
QPEGFKISGQENKVCK R+S Y
Subjt: QPEGFKISGQENKVCK-RESPY
|
|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 3.8e-27 | 37.56 | Show/hide |
Query: TSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEED-PKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCK
T N E+ RRS+R +T+ + E + ++ N + I D P ++ E D S W+EAI +EL++ +N+TW + P + +
Subjt: TSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEED-PKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCK
Query: WIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTLIALAVIHNLLILQIDVKTTFLNGDLEEEIYMTQPEGFKISGQENKVCK
W+F K G+ RYKARLV G+TQK IDY +T++PV +I++ R +++L + +NL + Q+DVKT FLNG L+EEIYM P+G IS + VCK
Subjt: WIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTLIALAVIHNLLILQIDVKTTFLNGDLEEEIYMTQPEGFKISGQENKVCK
|
|
| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 6.3e-38 | 44.44 | Show/hide |
Query: LRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEED--PKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWIFKRKKK
LRRS+R R E P T LI +D P++ +E L+ + + +A++ E++SL N T++LV+LP G +P++CKW+FK KK
Subjt: LRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEED--PKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWIFKRKKK
Query: PNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTLIALAVIHNLLILQIDVKTTFLNGDLEEEIYMTQPEGFKISGQENKVCK
+ + RYKARLVV G+ QK+GID+ + +SPV K+T+IRT+++LA +L + Q+DVKT FL+GDLEEEIYM QPEGF+++G+++ VCK
Subjt: PNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTLIALAVIHNLLILQIDVKTTFLNGDLEEEIYMTQPEGFKISGQENKVCK
|
|
| P92520 Uncharacterized mitochondrial protein AtMg00820 | 1.0e-16 | 41.9 | Show/hide |
Query: IEEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRT
I+++PK+ AL W +A++ ELD+L N TW LV P+ + CKW+FK K +G+++R KARLV G+ Q++GI + +TYSPV + TIRT
Subjt: IEEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRT
Query: LIALA
++ +A
Subjt: LIALA
|
|
| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.2e-28 | 42.95 | Show/hide |
Query: EEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPI-RCKWIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRT
E +P+T A+ ++ W+ A+ SE+++ + NHTW+LV P + I C+WIF +K +GS+ RYKARLV GY Q+ G+DY +T+SPV K T+IR
Subjt: EEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPI-RCKWIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRT
Query: LIALAVIHNLLILQIDVKTTFLNGDLEEEIYMTQPEGFKISGQENKVCK
++ +AV + I Q+DV FL G L +++YM+QP GF + N VCK
Subjt: LIALAVIHNLLILQIDVKTTFLNGDLEEEIYMTQPEGFKISGQENKVCK
|
|
| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.3e-27 | 42.18 | Show/hide |
Query: DPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPI-RCKWIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTLI
+P+T A+ ++ W++A+ SE+++ + NHTW+LV P + I C+WIF +K +GS+ RYKARLV GY Q+ G+DY +T+SPV K T+IR ++
Subjt: DPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPI-RCKWIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTLI
Query: ALAVIHNLLILQIDVKTTFLNGDLEEEIYMTQPEGFKISGQENKVCK
+AV + I Q+DV FL G L +E+YM+QP GF + + VC+
Subjt: ALAVIHNLLILQIDVKTTFLNGDLEEEIYMTQPEGFKISGQENKVCK
|
|
