; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0222191 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0222191
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRibonuclease H
Genome locationCMiso1.1chr08:10645603..10646688
RNA-Seq ExpressionCmc08g0222191
SyntenyCmc08g0222191
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031737561.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402452 [Cucumis sativus]1.6e-18386.98Show/hide
Query:  MKPDVLIKIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDRE
        MKPD+LIK KEEVQK+IEAGFL VS YPEWVANIVPVPKKD KVRMCVDYRDLNR+SPKDN PL HIDMLVDN AGYSTFSFM+GF GYNQIKMAEEDRE
Subjt:  MKPDVLIKIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDRE

Query:  KTTFITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKE
        KTTFITLW TFCYKVM F LKNAGATYQRAMVTLFHDMMHKEIEVYVD MIAKSK NE HT  LQKLFDRLRKYQLKLNPSKCTFG T GKLLGFIV++E
Subjt:  KTTFITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKE

Query:  GIKVDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESS
        GIKVDPDKV+ IM+MPS  TEKE+R FLGRLNYIS+FISHLTPTCEPIFKLL KNN GKWN+DCE+AFNKIKQYLQSPPVLIPPAPG+PLILYL VLE S
Subjt:  GIKVDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESS

Query:  MDGILGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYMLYHTTWLI
        M G+LGQHDLSGKKE  IYYL+K FTDYE +YSMLERTCCALVWTAHRLRQYMLYHTTWLI
Subjt:  MDGILGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYMLYHTTWLI

XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]9.4e-18486.98Show/hide
Query:  MKPDVLIKIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDRE
        MKPD+LIK+KEEVQK+IEAGFL VS YPEWVANIVPVPKKD KVRMCVDYRDLNR+SPKDN PL HIDMLVDN AGYSTFSFM+GF GYNQIKMAEEDRE
Subjt:  MKPDVLIKIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDRE

Query:  KTTFITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKE
        KTTFITLW TFCYKVM F LKNAGATYQRAMVTLFHDMMHKEIEVYVD MIAKSK NE HT  LQKLFDRLRKYQLKLNPSKCTFG T GKLLGFIV++E
Subjt:  KTTFITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKE

Query:  GIKVDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESS
        GIKVDPDKV+ IM+MPS  TEKE+R FLGRLNYIS+FISHLTPTCEPIFKLL KNN GKWN+DCE+AFNKIKQYLQSPPVLIPPAPG+PLILYL VLE S
Subjt:  GIKVDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESS

Query:  MDGILGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYMLYHTTWLI
        M G+LGQHDLSGKKE  IYYL+K FTDYE +YSMLERTCCALVWTAHRLRQYMLYHTTWLI
Subjt:  MDGILGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYMLYHTTWLI

XP_031738857.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus]9.4e-18486.98Show/hide
Query:  MKPDVLIKIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDRE
        MKPD+LIK+KEEVQK+IEAGFL VS YPEWVANIVPVPKKD KVRMCVDYRDLNR+SPKDN PL HIDMLVDN AGYSTFSFM+GF GYNQIKMAEEDRE
Subjt:  MKPDVLIKIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDRE

Query:  KTTFITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKE
        KTTFITLW TFCYKVM F LKNAGATYQRAMVTLFHDMMHKEIEVYVD MIAKSK NE HT  LQKLFDRLRKYQLKLNPSKCTFG T GKLLGFIV++E
Subjt:  KTTFITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKE

Query:  GIKVDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESS
        GIKVDPDKV+ IM+MPS  TEKE+R FLGRLNYIS+FISHLTPTCEPIFKLL KNN GKWN+DCE+AFNKIKQYLQSPPVLIPPAPG+PLILYL VLE S
Subjt:  GIKVDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESS

Query:  MDGILGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYMLYHTTWLI
        M G+LGQHDLSGKKE  IYYL+K FTDYE +YSMLERTCCALVWTAHRLRQYMLYHTTWLI
Subjt:  MDGILGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYMLYHTTWLI

XP_031739260.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402917 [Cucumis sativus]7.2e-18487.26Show/hide
Query:  MKPDVLIKIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDRE
        MKPD+LIKIKEEVQK+IEAGFLTVS YPEWVANIVPVPKKD KVRMCVDYRDLNR+SPKDN PL HIDMLVDN AGYSTFSFM+GF GYNQIKMAEEDRE
Subjt:  MKPDVLIKIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDRE

Query:  KTTFITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKE
        KTTFITLW TFCYKVM F LKNAGATYQRAMVTLFHDMMHKEIEVYVD MIAKSK NE HT  LQKLFDRLRKYQLKLNPSKCTFG T GKLLGFIV++E
Subjt:  KTTFITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKE

Query:  GIKVDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESS
        GIKVDPDKV+ IM+MPS  TEKE+R FLGRLNYIS+FISHLTPTCEPIFKLL KNN GKWN+DCE+AFNKIKQYLQSPPVLIPPAPG+ LILYL VLE S
Subjt:  GIKVDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESS

Query:  MDGILGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYMLYHTTWLI
        M G+LGQHDLSGKKE  IYYL+K FTDYE +YSMLERTCCALVWTAHRLRQYMLYHTTWLI
Subjt:  MDGILGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYMLYHTTWLI

XP_031742360.1 uncharacterized protein LOC116404324 [Cucumis sativus]9.4e-18486.98Show/hide
Query:  MKPDVLIKIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDRE
        MKPD+LIK+KEEVQK+IEAGFL VS YPEWVANIVPVPKKD KVRMCVDYRDLNR+SPKDN PL HIDMLVDN AGYSTFSFM+GF GYNQIKMAEEDRE
Subjt:  MKPDVLIKIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDRE

Query:  KTTFITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKE
        KTTFITLW TFCYKVM F LKNAGATYQRAMVTLFHDMMHKEIEVYVD MIAKSK NE HT  LQKLFDRLRKYQLKLNPSKCTFG T GKLLGFIV++E
Subjt:  KTTFITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKE

Query:  GIKVDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESS
        GIKVDPDKV+ IM+MPS  TEKE+R FLGRLNYIS+FISHLTPTCEPIFKLL KNN GKWN+DCE+AFNKIKQYLQSPPVLIPPAPG+PLILYL VLE S
Subjt:  GIKVDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESS

Query:  MDGILGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYMLYHTTWLI
        M G+LGQHDLSGKKE  IYYL+K FTDYE +YSMLERTCCALVWTAHRLRQYMLYHTTWLI
Subjt:  MDGILGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYMLYHTTWLI

TrEMBL top hitse value%identityAlignment
A0A5A7T5W6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein1.3e-17088.29Show/hide
Query:  KEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDREKTTFITLWE
        +EEVQK+IEAGFLTVS YPEWVANIVPVPKKD KVRMC+DYRDLNR+SPKDN PL HIDMLVDN AGYSTFSFM+GF GYNQIKMAEEDREKTTFITLW 
Subjt:  KEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDREKTTFITLWE

Query:  TFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKEGIKVDPDKV
        TFCYKVM F LKNAGATYQRAMVTLFHDMMHKEIEVYVD MIAKSKT+E HT TLQKLFDRLRKYQLKLNPSKCTFG TLGKLLGFIV++EGIKVDPDKV
Subjt:  TFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKEGIKVDPDKV

Query:  RVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESSMDGILGQHD
        R IMEMPS +TEKEIRGFLGRLNYIS+FIS+LTPTCEPIFKLL KNN GKWN+DCE+AFNKIKQYLQSPPVLIPPAPG+PLILYL VLES MDG+LGQHD
Subjt:  RVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESSMDGILGQHD

Query:  LSGKKEDTIYYLTKTFTDYEFRYSMLERTCCAL
        LSGKKE  IYYL+K FTDYE RYSMLERTCCAL
Subjt:  LSGKKEDTIYYLTKTFTDYEFRYSMLERTCCAL

A0A5A7VK41 Reverse transcriptase domain-containing protein2.0e-17986.98Show/hide
Query:  MKPDVLIKIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDRE
        MKPDVLIKIKEEVQK+IEAGFLTV  YPEWVANIVPVPKKD KVRMCVDYRDLNR+SPKDNLPL HIDMLV+N AGYSTFSFM+GF GYNQIKMAEEDRE
Subjt:  MKPDVLIKIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDRE

Query:  KTTFITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKE
        K TFITLW TF YKVM F LKN GATYQRAMVTLFHDMMHKEIEVYVD MIAKSK +E HTITLQKLFDRLRKYQLK NPSKCTFG T GKLLGFIV++E
Subjt:  KTTFITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKE

Query:  GIKVDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESS
        GIKVDPDKVR IMEM S + EKEIRGFLGRLNYIS+FISHLTPTCE IFKLL KNN GKWN+DCE+AFNKIKQYLQSPPVLIPPA G+PLILYL VLESS
Subjt:  GIKVDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESS

Query:  MDGILGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYMLYHTTWLI
        MDG+LGQHDLSGKKE  IYYL+K FTDYE RYS LERTCCALVWTAHRLRQYMLYHTT LI
Subjt:  MDGILGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYMLYHTTWLI

A0A6J1D099 Ribonuclease H1.7e-16276.45Show/hide
Query:  MKPDVLIKIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDRE
        M+PD+LIKIK EV+K+I+AGFLTVSNYPEWVANIVPVPKK+ +VRMCVDYRDLNR+SPKDN PL HID+LVDN AG+STFSFM+GF GYNQIKMA EDRE
Subjt:  MKPDVLIKIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDRE

Query:  KTTFITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKE
        KTTFITLW TFCYKVMSF LKNAGATYQRAMVTLFHD+MHKEIEVYVD MIAKSK  E HT  L+KLFDRLRK++LKLN +KC FG T GKLLGF+V++E
Subjt:  KTTFITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKE

Query:  GIKVDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESS
        GIKVDPDKV+ I+EMP  +T+KE+RGFLGRLNYI++FISHLT TCEPIFKLL KNN G  ++DC+ AF+K+KQYLQ PPVL+PP PG+ LILYL V E+S
Subjt:  GIKVDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESS

Query:  MDGILGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYMLYHTTWLI
        M  +LGQHD SG+KE  IYYL+K FTD E RYS +E+TCCAL W A RLRQYMLY+TTWLI
Subjt:  MDGILGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYMLYHTTWLI

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222319.0e-16476.18Show/hide
Query:  MKPDVLIKIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDRE
        M+PD+LIK+K+EV+K+I+AGFLTVSNYPEWVANIVPVPKK+ +VRMCVDYRDLNR+SPKDN PL HID+LVDN AG+STFSFM+GF GYN+IKMA EDRE
Subjt:  MKPDVLIKIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDRE

Query:  KTTFITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKE
        KTTFITLW TFCYKVMSF LKNAGATYQRAMVTLFHD+MHKEIEVYVD MIAKS+  E HT+ L+KLF+RLRK+QLKLNP+KCTFGVT GKLLGF+V +E
Subjt:  KTTFITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKE

Query:  GIKVDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESS
        GIKVDPDKV+ I+EM   +T KE+RGFLGRLNYI++FISHLT TCEPIFKLL KNN G W +DC+ AF+KIKQY QSPP+L+PP  G+PLILYL + E+S
Subjt:  GIKVDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESS

Query:  MDGILGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYMLYHTTWLI
        M  +LGQHD SG+KE  IYYL+K FTD E  YS +E+TCCAL W AHRLRQYMLY+TTWLI
Subjt:  MDGILGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYMLYHTTWLI

A0A6J1DZ90 Ribonuclease H5.3e-16476.45Show/hide
Query:  MKPDVLIKIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDRE
        M+PD+LIKIK+EV+K+I+AGFLTVSNYPEWVANIVPVPKK+ +VRMCVDYRDLNR+SPKDN PL HID+LVDN AG+STFSFM GF G N IKMA EDRE
Subjt:  MKPDVLIKIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDRE

Query:  KTTFITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKE
        KTTFITLW TFCYKVM F LKN GATYQRAMVTLFHD+MHKEIEVYVD MIAKSK  E HT  L+KLFDRLRK++LKLNP+KC FG T GKLLGF+V++E
Subjt:  KTTFITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKE

Query:  GIKVDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESS
        GIKVDPDKV+ I+EMP  +T+KE+RGFLGRLNYI++FISHLT TCEPIFKLL KNN G W++DC+ AFNKIKQYLQ PP+L+PP PG+PLILYL V E+S
Subjt:  GIKVDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESS

Query:  MDGILGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYMLYHTTWLI
        M  +LGQHD SG+KE  IYYL+K FTD E RYS +E+TCCAL W A RLRQYMLY+TTWLI
Subjt:  MDGILGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYMLYHTTWLI

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.8e-4230.7Show/hide
Query:  KIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKD-----EKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDREKT
        +++ ++Q  +  G +  SN P + + I  VPKK      +K R+ +DYR LN  +  D  P+ ++D ++      + F+ ++   G++QI+M  E   KT
Subjt:  KIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKD-----EKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDREKT

Query:  TFITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKEGI
         F T    + Y  M F LKNA AT+QR M  +   +++K   VY+D +I  S + + H  +L  +F++L K  LKL   KC F       LG ++  +GI
Subjt:  TFITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKEGI

Query:  KVDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQ-GKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESSM
        K +P+K+  I + P     KEI+ FLG   Y  KFI +     +P+ K L KN +    N + + AF K+K  +   P+L  P   +   L     + ++
Subjt:  KVDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQ-GKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESSM

Query:  DGILGQ--HDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYML
          +L Q  H LS        Y+++T  ++E  YS +E+   A+VW     R Y+L
Subjt:  DGILGQ--HDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYML

P20825 Retrovirus-related Pol polyprotein from transposon 2975.4e-4130.59Show/hide
Query:  IKIKEEVQKKIEAGFLTVS----NYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDREKT
        I+++ +VQ+ +  G +  S    N P WV    P      K R+ +DYR LN  +  D  P+ ++D ++        F+ ++   G++QI+M EE   KT
Subjt:  IKIKEEVQKKIEAGFLTVS----NYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDREKT

Query:  TFITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKEGI
         F T    + Y  M F L+NA AT+QR M  +   +++K   VY+D +I  S +   H  ++Q +F +L    LKL   KC F       LG IV  +GI
Subjt:  TFITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKEGI

Query:  KVDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNK-DCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESSM
        K +P KV+ I+  P    +KEIR FLG   Y  KFI +     +P+   L K  +    K +  +AF K+K  +   P+L  P   +  +L       ++
Subjt:  KVDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNK-DCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESSM

Query:  DGILGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYML
          +L Q+         I ++++T  D+E  YS +E+   A+VW     R Y+L
Subjt:  DGILGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYML

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.1e-3831.05Show/hide
Query:  KIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDREKTTFITL
        +I + VQK ++  F+  S  P   + +V VPKKD   R+CVDYR LN+++  D  PL  ID L+        F+ ++   GY+QI M  +DR KT F+T 
Subjt:  KIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDREKTTFITL

Query:  WETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKEGIKVDPD
           + Y VM F L NA +T+ R M   F D+  + + VY+D ++  S++ E H   L  + +RL+   L +   KC F     + LG+ +  + I     
Subjt:  WETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKEGIKVDPD

Query:  KVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESSMDGI---
        K   I + P+ +T K+ + FLG +NY  +FI + +   +PI   +   +Q  W +  +KA  K+K  L + PVL+   P      Y +  ++S DGI   
Subjt:  KVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESSMDGI---

Query:  LGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYMLY
        L + D   K    + Y +K+    +  Y   E     ++   H  R YML+
Subjt:  LGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYMLY

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus6.2e-3728.25Show/hide
Query:  KIKEEVQKKIEAGFLTVSNYPE----WVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDREKTT
        +++ ++ + ++ G +  SN P     W+    P P  +++ RM VD++ LN  +  D  P+  I+  + +      F+ ++   G++QI M E D  KT 
Subjt:  KIKEEVQKKIEAGFLTVSNYPE----WVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDREKTT

Query:  FITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKEGIK
        F TL   + +  + F LKNA A +QR +  +  + + K   VY+D +I  S+  + H   L+ +   L K  L++N  K  F  T  + LG+IV  +GIK
Subjt:  FITLWETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKEGIK

Query:  VDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLH------KNNQGK-----WNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLIL
         DP KVR I EMP   + KE++ FLG  +Y  KFI       +P+  L        K++Q        ++   ++FN +K  L S  +L  P   +P  L
Subjt:  VDPDKVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLH------KNNQGK-----WNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLIL

Query:  YLIVLESSMDGILGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYM
               ++  +L Q D    ++  I Y++++    E  Y+ +E+   A++W+   LR Y+
Subjt:  YLIVLESSMDGILGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYM

Q99315 Transposon Ty3-G Gag-Pol polyprotein6.6e-3931.05Show/hide
Query:  KIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDREKTTFITL
        +I + VQK ++  F+  S  P   + +V VPKKD   R+CVDYR LN+++  D  PL  ID L+        F+ ++   GY+QI M  +DR KT F+T 
Subjt:  KIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDREKTTFITL

Query:  WETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKEGIKVDPD
           + Y VM F L NA +T+ R M   F D+  + + VY+D ++  S++ E H   L  + +RL+   L +   KC F     + LG+ +  + I     
Subjt:  WETFCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKEGIKVDPD

Query:  KVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESSMDGI---
        K   I + P+ +T K+ + FLG +NY  +FI + +   +PI   +   +Q  W +  +KA +K+K  L + PVL+   P      Y +  ++S DGI   
Subjt:  KVRVIMEMPSSRTEKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESSMDGI---

Query:  LGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYMLY
        L + D   K    + Y +K+    +  Y   E     ++   H  R YML+
Subjt:  LGQHDLSGKKEDTIYYLTKTFTDYEFRYSMLERTCCALVWTAHRLRQYMLY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACCTGATGTACTTATTAAAATAAAGGAGGAAGTACAGAAGAAAATTGAAGCAGGGTTCCTCACAGTCTCCAACTATCCTGAATGGGTGGCAAACATCGTTCCAGT
GCCCAAAAAAGATGAAAAAGTGAGAATGTGTGTGGATTATAGAGATTTAAATCGATCTAGTCCAAAAGATAACTTGCCTTTACTTCATATCGACATGCTGGTAGATAACG
CTGCAGGATACTCAACTTTCTCCTTCATGAATGGTTTTCCAGGATATAATCAGATCAAAATGGCTGAAGAAGATAGAGAAAAAACGACATTCATTACTCTTTGGGAAACA
TTTTGCTACAAAGTAATGTCTTTTTGTTTGAAAAATGCTGGGGCAACATATCAACGAGCAATGGTTACACTTTTTCATGATATGATGCATAAGGAAATAGAGGTGTACGT
TGATGGTATGATTGCAAAATCCAAGACAAATGAATATCATACAATCACACTCCAAAAATTATTTGATCGGTTGAGAAAATATCAATTGAAATTAAATCCATCCAAATGTA
CATTTGGGGTAACCTTGGGAAAGCTATTGGGATTCATAGTCAATAAAGAAGGGATCAAAGTAGACCCAGATAAAGTGAGGGTTATCATGGAAATGCCATCTTCTAGAACA
GAAAAAGAAATTCGAGGTTTTCTTGGAAGATTGAACTACATATCCAAATTTATCTCACATTTAACACCAACATGTGAACCAATCTTCAAGCTCTTACATAAAAACAACCA
AGGAAAATGGAATAAGGATTGTGAAAAAGCTTTCAACAAAATTAAGCAGTATTTGCAGAGCCCACCAGTACTGATACCTCCAGCTCCAGGGCAACCATTAATCTTGTATT
TAATAGTATTAGAAAGTTCCATGGATGGTATTCTAGGACAACATGATTTATCAGGGAAGAAAGAGGATACCATTTATTATTTGACCAAAACGTTTACCGATTATGAGTTT
AGATACTCAATGTTAGAGCGAACTTGTTGTGCTTTGGTATGGACCGCTCATCGTTTGAGGCAATATATGTTATACCATACGACATGGCTTATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAACCTGATGTACTTATTAAAATAAAGGAGGAAGTACAGAAGAAAATTGAAGCAGGGTTCCTCACAGTCTCCAACTATCCTGAATGGGTGGCAAACATCGTTCCAGT
GCCCAAAAAAGATGAAAAAGTGAGAATGTGTGTGGATTATAGAGATTTAAATCGATCTAGTCCAAAAGATAACTTGCCTTTACTTCATATCGACATGCTGGTAGATAACG
CTGCAGGATACTCAACTTTCTCCTTCATGAATGGTTTTCCAGGATATAATCAGATCAAAATGGCTGAAGAAGATAGAGAAAAAACGACATTCATTACTCTTTGGGAAACA
TTTTGCTACAAAGTAATGTCTTTTTGTTTGAAAAATGCTGGGGCAACATATCAACGAGCAATGGTTACACTTTTTCATGATATGATGCATAAGGAAATAGAGGTGTACGT
TGATGGTATGATTGCAAAATCCAAGACAAATGAATATCATACAATCACACTCCAAAAATTATTTGATCGGTTGAGAAAATATCAATTGAAATTAAATCCATCCAAATGTA
CATTTGGGGTAACCTTGGGAAAGCTATTGGGATTCATAGTCAATAAAGAAGGGATCAAAGTAGACCCAGATAAAGTGAGGGTTATCATGGAAATGCCATCTTCTAGAACA
GAAAAAGAAATTCGAGGTTTTCTTGGAAGATTGAACTACATATCCAAATTTATCTCACATTTAACACCAACATGTGAACCAATCTTCAAGCTCTTACATAAAAACAACCA
AGGAAAATGGAATAAGGATTGTGAAAAAGCTTTCAACAAAATTAAGCAGTATTTGCAGAGCCCACCAGTACTGATACCTCCAGCTCCAGGGCAACCATTAATCTTGTATT
TAATAGTATTAGAAAGTTCCATGGATGGTATTCTAGGACAACATGATTTATCAGGGAAGAAAGAGGATACCATTTATTATTTGACCAAAACGTTTACCGATTATGAGTTT
AGATACTCAATGTTAGAGCGAACTTGTTGTGCTTTGGTATGGACCGCTCATCGTTTGAGGCAATATATGTTATACCATACGACATGGCTTATTTAA
Protein sequenceShow/hide protein sequence
MKPDVLIKIKEEVQKKIEAGFLTVSNYPEWVANIVPVPKKDEKVRMCVDYRDLNRSSPKDNLPLLHIDMLVDNAAGYSTFSFMNGFPGYNQIKMAEEDREKTTFITLWET
FCYKVMSFCLKNAGATYQRAMVTLFHDMMHKEIEVYVDGMIAKSKTNEYHTITLQKLFDRLRKYQLKLNPSKCTFGVTLGKLLGFIVNKEGIKVDPDKVRVIMEMPSSRT
EKEIRGFLGRLNYISKFISHLTPTCEPIFKLLHKNNQGKWNKDCEKAFNKIKQYLQSPPVLIPPAPGQPLILYLIVLESSMDGILGQHDLSGKKEDTIYYLTKTFTDYEF
RYSMLERTCCALVWTAHRLRQYMLYHTTWLI