; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0222221 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0222221
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr08:10725903..10726655
RNA-Seq ExpressionCmc08g0222221
SyntenyCmc08g0222221
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR041373 - Reverse transcriptase, RNase H-like domain
IPR041588 - Integrase zinc-binding domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035188.1 pol protein [Cucumis melo var. makuwa]1.1e-12290.36Show/hide
Query:  SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL
        SHEQNYPTHELEL AVVFALKIWRHYL  EKIQIFTDHKSLKYFF QK+LNMRQRRWLELVKDYDCEILYH G ANVVA  LS+ V HSA LIT QAPLL
Subjt:  SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL

Query:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPGTTK
        RDFERVEIAVSVGEV SQL QLSVQPTLRQRIIV QLN  YLVEKRRLV+TGQGEDF ISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPG+TK
Subjt:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPGTTK

Query:  MYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPLSVPG
        MYQDLRSVYWWRNMKREVA+FVS+CLVCQQVKAPRQRPAGLLQPLSVPG
Subjt:  MYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPLSVPG

KAA0041490.1 hypothetical protein E6C27_scaffold6G00780 [Cucumis melo var. makuwa]2.9e-12390.76Show/hide
Query:  SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL
        SHEQNYPTH LEL AVVFALKIWRHYLY EKIQI+TDHKSLKYFF QKELNMR RRWLELVKDYDCEILYHPGKANVVA  LSR V HSA LIT QAPLL
Subjt:  SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL

Query:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPGTTK
        RDFER EIAVSVGEVTSQL QLSVQPTLRQRIIV QLN  YLVEKRRLVETGQGEDF IS DDGL FEGRLCV EDSAVKTELLTEAHSSPFTMHPG+TK
Subjt:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPGTTK

Query:  MYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPLSVPG
        MYQDLRSVYWWRNMKREVADFVS+CLVCQQVKAPRQRPAGLLQPLSVPG
Subjt:  MYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPLSVPG

KAA0050011.1 pol protein [Cucumis melo var. makuwa]7.6e-12490.36Show/hide
Query:  SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL
        SHEQNYPTH+LEL AVVFALKIWRHYLY EKIQI TDHKSLKYFF QKELNMRQRRWLELVKDYDCE+LYHPGKANVVA  LSR V HSA LIT QAPLL
Subjt:  SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL

Query:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPGTTK
        RDFER EIAVSVGEVTSQL QLSVQPTLRQRIIV QLN  YLVEKRRLVETGQGEDF ISSDDGLTFEGRLCV +DSA+KTELLTE HSSPFTMHPG+TK
Subjt:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPGTTK

Query:  MYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPLSVPG
        MYQDLRSVYWWRNMKREVADFVS+CLVCQQVKAPRQRPAGLLQPLSVPG
Subjt:  MYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPLSVPG

TYK21801.1 pol protein [Cucumis melo var. makuwa]1.1e-12290.36Show/hide
Query:  SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL
        SHEQNYPTHELEL AVVFALKIWRHYL  EKIQIFTDHKSLKYFF QK+LNMRQRRWLELVKDYDCEILYH G ANVVA  LS+ V HSA LIT QAPLL
Subjt:  SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL

Query:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPGTTK
        RDFERVEIAVSVGEV SQL QLSVQPTLRQRIIV QLN  YLVEKRRLV+TGQGEDF ISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPG+TK
Subjt:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPGTTK

Query:  MYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPLSVPG
        MYQDLRSVYWWRNMKREVA+FVS+CLVCQQVKAPRQRPAGLLQPLSVPG
Subjt:  MYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPLSVPG

TYK24364.1 putative polyprotein [Cucumis melo var. makuwa]2.9e-12390.76Show/hide
Query:  SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL
        SHEQNYPTH LEL AVVFALKIWRHYLY EKIQI+TDHKSLKYFF QKELNMR RRWLELVKDYDCEILYHPGKANVVA  LSR V HSA LIT QAPLL
Subjt:  SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL

Query:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPGTTK
        RDFER EIAVSVGEVTSQL QLSVQPTLRQRIIV QLN  YLVEKRRLVETGQGEDF IS DDGL FEGRLCV EDSAVKTELLTEAHSSPFTMHPG+TK
Subjt:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPGTTK

Query:  MYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPLSVPG
        MYQDLRSVYWWRNMKREVADFVS+CLVCQQVKAPRQRPAGLLQPLSVPG
Subjt:  MYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPLSVPG

TrEMBL top hitse value%identityAlignment
A0A5A7SX56 Pol protein5.3e-12390.36Show/hide
Query:  SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL
        SHEQNYPTHELEL AVVFALKIWRHYL  EKIQIFTDHKSLKYFF QK+LNMRQRRWLELVKDYDCEILYH G ANVVA  LS+ V HSA LIT QAPLL
Subjt:  SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL

Query:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPGTTK
        RDFERVEIAVSVGEV SQL QLSVQPTLRQRIIV QLN  YLVEKRRLV+TGQGEDF ISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPG+TK
Subjt:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPGTTK

Query:  MYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPLSVPG
        MYQDLRSVYWWRNMKREVA+FVS+CLVCQQVKAPRQRPAGLLQPLSVPG
Subjt:  MYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPLSVPG

A0A5A7TDX1 Reverse transcriptase1.4e-12390.76Show/hide
Query:  SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL
        SHEQNYPTH LEL AVVFALKIWRHYLY EKIQI+TDHKSLKYFF QKELNMR RRWLELVKDYDCEILYHPGKANVVA  LSR V HSA LIT QAPLL
Subjt:  SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL

Query:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPGTTK
        RDFER EIAVSVGEVTSQL QLSVQPTLRQRIIV QLN  YLVEKRRLVETGQGEDF IS DDGL FEGRLCV EDSAVKTELLTEAHSSPFTMHPG+TK
Subjt:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPGTTK

Query:  MYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPLSVPG
        MYQDLRSVYWWRNMKREVADFVS+CLVCQQVKAPRQRPAGLLQPLSVPG
Subjt:  MYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPLSVPG

A0A5A7U8T4 Pol protein3.7e-12490.36Show/hide
Query:  SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL
        SHEQNYPTH+LEL AVVFALKIWRHYLY EKIQI TDHKSLKYFF QKELNMRQRRWLELVKDYDCE+LYHPGKANVVA  LSR V HSA LIT QAPLL
Subjt:  SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL

Query:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPGTTK
        RDFER EIAVSVGEVTSQL QLSVQPTLRQRIIV QLN  YLVEKRRLVETGQGEDF ISSDDGLTFEGRLCV +DSA+KTELLTE HSSPFTMHPG+TK
Subjt:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPGTTK

Query:  MYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPLSVPG
        MYQDLRSVYWWRNMKREVADFVS+CLVCQQVKAPRQRPAGLLQPLSVPG
Subjt:  MYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPLSVPG

A0A5D3DDR0 Pol protein5.3e-12390.36Show/hide
Query:  SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL
        SHEQNYPTHELEL AVVFALKIWRHYL  EKIQIFTDHKSLKYFF QK+LNMRQRRWLELVKDYDCEILYH G ANVVA  LS+ V HSA LIT QAPLL
Subjt:  SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL

Query:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPGTTK
        RDFERVEIAVSVGEV SQL QLSVQPTLRQRIIV QLN  YLVEKRRLV+TGQGEDF ISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPG+TK
Subjt:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPGTTK

Query:  MYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPLSVPG
        MYQDLRSVYWWRNMKREVA+FVS+CLVCQQVKAPRQRPAGLLQPLSVPG
Subjt:  MYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPLSVPG

A0A5D3DL91 Reverse transcriptase1.4e-12390.76Show/hide
Query:  SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL
        SHEQNYPTH LEL AVVFALKIWRHYLY EKIQI+TDHKSLKYFF QKELNMR RRWLELVKDYDCEILYHPGKANVVA  LSR V HSA LIT QAPLL
Subjt:  SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL

Query:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPGTTK
        RDFER EIAVSVGEVTSQL QLSVQPTLRQRIIV QLN  YLVEKRRLVETGQGEDF IS DDGL FEGRLCV EDSAVKTELLTEAHSSPFTMHPG+TK
Subjt:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPGTTK

Query:  MYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPLSVPG
        MYQDLRSVYWWRNMKREVADFVS+CLVCQQVKAPRQRPAGLLQPLSVPG
Subjt:  MYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPLSVPG

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein7.6e-1826.29Show/hide
Query:  NYPTHELELVAVVFALKIWRHYLYS--EKIQIFTDHKSL--KYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL
        NY   + E++A++ +LK WRHYL S  E  +I TDH++L  +     +  N R  RW   ++D++ EI Y PG AN +A  LSR       ++    P+ 
Subjt:  NYPTHELELVAVVFALKIWRHYLYS--EKIQIFTDHKSL--KYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL

Query:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLV-----EKRRLVETGQGED-FFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTM
        +D E   I        + + Q+S+    + +++    N + L+     E +R+ E  Q +D   I+S D      ++ +  D+ +   ++ + H     +
Subjt:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLV-----EKRRLVETGQGED-FFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTM

Query:  HPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPL
        HPG   +   +   + W+ +++++ ++V  C  CQ  K+   +P G LQP+
Subjt:  HPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPL

P0CT35 Transposon Tf2-2 polyprotein7.6e-1826.29Show/hide
Query:  NYPTHELELVAVVFALKIWRHYLYS--EKIQIFTDHKSL--KYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL
        NY   + E++A++ +LK WRHYL S  E  +I TDH++L  +     +  N R  RW   ++D++ EI Y PG AN +A  LSR       ++    P+ 
Subjt:  NYPTHELELVAVVFALKIWRHYLYS--EKIQIFTDHKSL--KYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL

Query:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLV-----EKRRLVETGQGED-FFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTM
        +D E   I        + + Q+S+    + +++    N + L+     E +R+ E  Q +D   I+S D      ++ +  D+ +   ++ + H     +
Subjt:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLV-----EKRRLVETGQGED-FFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTM

Query:  HPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPL
        HPG   +   +   + W+ +++++ ++V  C  CQ  K+   +P G LQP+
Subjt:  HPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPL

P0CT36 Transposon Tf2-3 polyprotein7.6e-1826.29Show/hide
Query:  NYPTHELELVAVVFALKIWRHYLYS--EKIQIFTDHKSL--KYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL
        NY   + E++A++ +LK WRHYL S  E  +I TDH++L  +     +  N R  RW   ++D++ EI Y PG AN +A  LSR       ++    P+ 
Subjt:  NYPTHELELVAVVFALKIWRHYLYS--EKIQIFTDHKSL--KYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL

Query:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLV-----EKRRLVETGQGED-FFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTM
        +D E   I        + + Q+S+    + +++    N + L+     E +R+ E  Q +D   I+S D      ++ +  D+ +   ++ + H     +
Subjt:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLV-----EKRRLVETGQGED-FFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTM

Query:  HPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPL
        HPG   +   +   + W+ +++++ ++V  C  CQ  K+   +P G LQP+
Subjt:  HPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPL

P0CT41 Transposon Tf2-12 polyprotein7.6e-1826.29Show/hide
Query:  NYPTHELELVAVVFALKIWRHYLYS--EKIQIFTDHKSL--KYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL
        NY   + E++A++ +LK WRHYL S  E  +I TDH++L  +     +  N R  RW   ++D++ EI Y PG AN +A  LSR       ++    P+ 
Subjt:  NYPTHELELVAVVFALKIWRHYLYS--EKIQIFTDHKSL--KYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL

Query:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLV-----EKRRLVETGQGED-FFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTM
        +D E   I        + + Q+S+    + +++    N + L+     E +R+ E  Q +D   I+S D      ++ +  D+ +   ++ + H     +
Subjt:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLV-----EKRRLVETGQGED-FFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTM

Query:  HPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPL
        HPG   +   +   + W+ +++++ ++V  C  CQ  K+   +P G LQP+
Subjt:  HPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPL

Q9UR07 Transposon Tf2-11 polyprotein7.6e-1826.29Show/hide
Query:  NYPTHELELVAVVFALKIWRHYLYS--EKIQIFTDHKSL--KYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL
        NY   + E++A++ +LK WRHYL S  E  +I TDH++L  +     +  N R  RW   ++D++ EI Y PG AN +A  LSR       ++    P+ 
Subjt:  NYPTHELELVAVVFALKIWRHYLYS--EKIQIFTDHKSL--KYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLL

Query:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLV-----EKRRLVETGQGED-FFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTM
        +D E   I        + + Q+S+    + +++    N + L+     E +R+ E  Q +D   I+S D      ++ +  D+ +   ++ + H     +
Subjt:  RDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLV-----EKRRLVETGQGED-FFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTM

Query:  HPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPL
        HPG   +   +   + W+ +++++ ++V  C  CQ  K+   +P G LQP+
Subjt:  HPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCATGAGCAGAACTACCCTACCCACGAATTAGAGTTGGTAGCAGTGGTCTTTGCACTGAAGATATGGAGGCATTACCTATACAGTGAGAAGATACAGATTTTCAC
TGACCATAAGAGCCTGAAGTACTTCTTCATCCAGAAGGAGTTGAACATGAGACAGAGGAGATGGCTCGAGTTGGTGAAAGACTATGACTGCGAGATTCTATACCACCCAG
GTAAGGCAAATGTAGTAGCTTACACGCTGAGTAGGAATGTTCCACATTCAGCAGAACTGATCACCAATCAAGCCCCCTTACTCAGAGATTTTGAGAGAGTCGAGATTGCA
GTCTCAGTAGGAGAGGTTACTTCACAGTTGGTTCAGTTGTCAGTACAGCCAACCCTGAGACAGAGGATTATTGTCGTTCAGTTGAATGGTTCTTATTTGGTTGAGAAGCG
TCGTTTGGTAGAGACAGGGCAAGGTGAGGACTTCTTCATATCCTCTGACGATGGCCTTACGTTTGAGGGACGCTTGTGTGTGTCGGAAGACAGTGCAGTCAAGACAGAGC
TTTTGACTGAGGCTCACAGTTCTCCATTTACCATGCACCCTGGAACTACGAAGATGTACCAGGACTTAAGGAGTGTCTATTGGTGGAGGAACATGAAGAGAGAAGTGGCA
GATTTTGTCAGTAAGTGTTTGGTGTGCCAGCAGGTGAAGGCACCTAGACAGCGGCCAGCCGGGTTGTTGCAACCCTTGAGTGTGCCAGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTCATGAGCAGAACTACCCTACCCACGAATTAGAGTTGGTAGCAGTGGTCTTTGCACTGAAGATATGGAGGCATTACCTATACAGTGAGAAGATACAGATTTTCAC
TGACCATAAGAGCCTGAAGTACTTCTTCATCCAGAAGGAGTTGAACATGAGACAGAGGAGATGGCTCGAGTTGGTGAAAGACTATGACTGCGAGATTCTATACCACCCAG
GTAAGGCAAATGTAGTAGCTTACACGCTGAGTAGGAATGTTCCACATTCAGCAGAACTGATCACCAATCAAGCCCCCTTACTCAGAGATTTTGAGAGAGTCGAGATTGCA
GTCTCAGTAGGAGAGGTTACTTCACAGTTGGTTCAGTTGTCAGTACAGCCAACCCTGAGACAGAGGATTATTGTCGTTCAGTTGAATGGTTCTTATTTGGTTGAGAAGCG
TCGTTTGGTAGAGACAGGGCAAGGTGAGGACTTCTTCATATCCTCTGACGATGGCCTTACGTTTGAGGGACGCTTGTGTGTGTCGGAAGACAGTGCAGTCAAGACAGAGC
TTTTGACTGAGGCTCACAGTTCTCCATTTACCATGCACCCTGGAACTACGAAGATGTACCAGGACTTAAGGAGTGTCTATTGGTGGAGGAACATGAAGAGAGAAGTGGCA
GATTTTGTCAGTAAGTGTTTGGTGTGCCAGCAGGTGAAGGCACCTAGACAGCGGCCAGCCGGGTTGTTGCAACCCTTGAGTGTGCCAGGGTGA
Protein sequenceShow/hide protein sequence
MSHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLLRDFERVEIA
VSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPGTTKMYQDLRSVYWWRNMKREVA
DFVSKCLVCQQVKAPRQRPAGLLQPLSVPG