CuGenDBv2

Gene ID	Cmc08g0222341
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr08:10959013..10959912
RNA-Seq Expression	Cmc08g0222341
Synteny	Cmc08g0222341
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

7.9e-152

89.93

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER
        MDFLFGLPRTSSGHDGIWVIV RLTKT RFI IK TSTLDQLAR YVDKI+SQ+GVPVSIVSDRDPRFTSKFW SLQKAMGTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYANKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNN+YQSSIGMAPYEALYGRPC+T VCWNEVGERKLVGPELVQ TTNNIKLIRENL+ AQDRQ+SYA+KR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYANKR

Query:  RRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLRKYIPDPLHMLQEQPVELKEDLSYVEAP
        RRNLEFQ GDQVFLKLSPWR V  F RKGK SPRYIG YQI +RVGPAAYRLELPI+LARIHDVFHVSMLRKYIPDP H+LQ+QPVELKEDLSYVE P
Subjt:  RRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLRKYIPDPLHMLQEQPVELKEDLSYVEAP

KAA0053246.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

7.9e-152

89.93

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER
        MDFLFGLPRTSSGHDGIWVIV RLTKT RFI IK TSTLDQLAR YVDKI+SQ+GVPVSIVSDRDPRFTSKFW SLQKAMGTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYANKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNN+YQSSIGMAPYEALYGRPC+T VCWNEVGERKLVGPELVQ TTNNIKLIRENL+ AQDRQ+SYA+KR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYANKR

Query:  RRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLRKYIPDPLHMLQEQPVELKEDLSYVEAP
        RRNLEFQ GDQVFLKLSPWR V  F RKGK SPRYIG YQI +RVGPAAYRLELPI+LARIHDVFHVSMLRKYIPDP H+LQ+QPVELKEDLSYVE P
Subjt:  RRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLRKYIPDPLHMLQEQPVELKEDLSYVEAP

KAA0059508.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

5.5e-153

90.27

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER
        MDFLFGLPRTSSGHDGIWVIV RLTKT RFI IK TSTLDQLAR YVDKI+SQ+GVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYANKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNN+YQSSIGMAPYEALYGRPC+T VCWNEVGERKLVGPELVQ TTNNIKLIRENL+ AQDRQ+SYA+KR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYANKR

Query:  RRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLRKYIPDPLHMLQEQPVELKEDLSYVEAP
        RRNLEFQ GDQVFLKLSPWR V  F RKGK SPRYIG YQI +RVGPAAYRLELPI+LARIHDVFHVSMLRKYIPDP H+LQ+QPVELKEDLSYVE P
Subjt:  RRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLRKYIPDPLHMLQEQPVELKEDLSYVEAP

KAA0059912.1 reverse transcriptase [Cucumis melo var. makuwa]

7.9e-152

89.93

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER
        MDFLFGLPRTSSGHDGIWVIV RLTKT RFI IK TSTLDQLAR YVDKI+SQ+GVPVSIVSDRDPRFTSKFW SLQKAMGTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYANKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNN+YQSSIGMAPYEALYGRPC+T VCWNEVGERKLVGPELVQ TTNNIKLIRENL+ AQDRQ+SYA+KR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYANKR

Query:  RRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLRKYIPDPLHMLQEQPVELKEDLSYVEAP
        RRNLEFQ GDQVFLKLSPWR V  F RKGK SPRYIG YQI +RVGPAAYRLELPI+LARIHDVFHVSMLRKYIPDP H+LQ+QPVELKEDLSYVE P
Subjt:  RRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLRKYIPDPLHMLQEQPVELKEDLSYVEAP

TYK05214.1 reverse transcriptase [Cucumis melo var. makuwa]

7.9e-152

89.93

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER
        MDFLFGLPRTSSGHDGIWVIV RLTKT RFI IK TSTLDQLAR YVDKI+SQ+GVPVSIVSDRDPRFTSKFW SLQKAMGTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYANKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNN+YQSSIGMAPYEALYGRPC+T VCWNEVGERKLVGPELVQ TTNNIKLIRENL+ AQDRQ+SYA+KR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYANKR

Query:  RRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLRKYIPDPLHMLQEQPVELKEDLSYVEAP
        RRNLEFQ GDQVFLKLSPWR V  F RKGK SPRYIG YQI +RVGPAAYRLELPI+LARIHDVFHVSMLRKYIPDP H+LQ+QPVELKEDLSYVE P
Subjt:  RRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLRKYIPDPLHMLQEQPVELKEDLSYVEAP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1Y5 Reverse transcriptase

3.8e-152

89.93

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER
        MDFLFGLPRTSSGHDGIWVIV RLTKT RFI IK TSTLDQLAR YVDKI+SQ+GVPVSIVSDRDPRFTSKFW SLQKAMGTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYANKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNN+YQSSIGMAPYEALYGRPC+T VCWNEVGERKLVGPELVQ TTNNIKLIRENL+ AQDRQ+SYA+KR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYANKR

Query:  RRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLRKYIPDPLHMLQEQPVELKEDLSYVEAP
        RRNLEFQ GDQVFLKLSPWR V  F RKGK SPRYIG YQI +RVGPAAYRLELPI+LARIHDVFHVSMLRKYIPDP H+LQ+QPVELKEDLSYVE P
Subjt:  RRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLRKYIPDPLHMLQEQPVELKEDLSYVEAP

A0A5A7U2V7 Reverse transcriptase

3.8e-152

89.93

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER
        MDFLFGLPRTSSGHDGIWVIV RLTKT RFI IK TSTLDQLAR YVDKI+SQ+GVPVSIVSDRDPRFTSKFW SLQKAMGTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYANKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNN+YQSSIGMAPYEALYGRPC+T VCWNEVGERKLVGPELVQ TTNNIKLIRENL+ AQDRQ+SYA+KR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYANKR

Query:  RRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLRKYIPDPLHMLQEQPVELKEDLSYVEAP
        RRNLEFQ GDQVFLKLSPWR V  F RKGK SPRYIG YQI +RVGPAAYRLELPI+LARIHDVFHVSMLRKYIPDP H+LQ+QPVELKEDLSYVE P
Subjt:  RRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLRKYIPDPLHMLQEQPVELKEDLSYVEAP

A0A5A7UWG4 DNA/RNA polymerases superfamily protein

2.6e-153

90.27

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER
        MDFLFGLPRTSSGHDGIWVIV RLTKT RFI IK TSTLDQLAR YVDKI+SQ+GVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYANKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNN+YQSSIGMAPYEALYGRPC+T VCWNEVGERKLVGPELVQ TTNNIKLIRENL+ AQDRQ+SYA+KR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYANKR

Query:  RRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLRKYIPDPLHMLQEQPVELKEDLSYVEAP
        RRNLEFQ GDQVFLKLSPWR V  F RKGK SPRYIG YQI +RVGPAAYRLELPI+LARIHDVFHVSMLRKYIPDP H+LQ+QPVELKEDLSYVE P
Subjt:  RRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLRKYIPDPLHMLQEQPVELKEDLSYVEAP

A0A5D3BHI1 Reverse transcriptase

3.8e-152

89.93

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER
        MDFLFGLPRTSSGHDGIWVIV RLTKT RFI IK TSTLDQLAR YVDKI+SQ+GVPVSIVSDRDPRFTSKFW SLQKAMGTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYANKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNN+YQSSIGMAPYEALYGRPC+T VCWNEVGERKLVGPELVQ TTNNIKLIRENL+ AQDRQ+SYA+KR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYANKR

Query:  RRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLRKYIPDPLHMLQEQPVELKEDLSYVEAP
        RRNLEFQ GDQVFLKLSPWR V  F RKGK SPRYIG YQI +RVGPAAYRLELPI+LARIHDVFHVSMLRKYIPDP H+LQ+QPVELKEDLSYVE P
Subjt:  RRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLRKYIPDPLHMLQEQPVELKEDLSYVEAP

A0A5D3BS67 Reverse transcriptase

3.8e-152

89.93

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER
        MDFLFGLPRTSSGHDGIWVIV RLTKT RFI IK TSTLDQLAR YVDKI+SQ+GVPVSIVSDRDPRFTSKFW SLQKAMGTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYANKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNN+YQSSIGMAPYEALYGRPC+T VCWNEVGERKLVGPELVQ TTNNIKLIRENL+ AQDRQ+SYA+KR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYANKR

Query:  RRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLRKYIPDPLHMLQEQPVELKEDLSYVEAP
        RRNLEFQ GDQVFLKLSPWR V  F RKGK SPRYIG YQI +RVGPAAYRLELPI+LARIHDVFHVSMLRKYIPDP H+LQ+QPVELKEDLSYVE P
Subjt:  RRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLRKYIPDPLHMLQEQPVELKEDLSYVEAP

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

4.2e-31

30.69

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER
        MDF+  LP  SSG++ ++V+V R +K    +    + T +Q AR +  ++I+  G P  I++D D  FTS+ W          +KFS  + PQTDGQ+ER
Subjt:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEAL--YGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYAN
        T QT+E +LR        +W  H+ L++ +YNN+  S+  M P+E +  Y      L    E+        E  Q T    + ++E+L     + + Y +
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEAL--YGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYAN

Query:  KRRRNL-EFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARI-HDVFHVSMLRKY
         + + + EFQ GD V +K +         +  K +P + G + ++++ GP  Y L+LP  +  +    FHVS L KY
Subjt:  KRRRNL-EFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARI-HDVFHVSMLRKY

P0CT41 Transposon Tf2-12 polyprotein

4.2e-31

30.69

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER
        MDF+  LP  SSG++ ++V+V R +K    +    + T +Q AR +  ++I+  G P  I++D D  FTS+ W          +KFS  + PQTDGQ+ER
Subjt:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEAL--YGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYAN
        T QT+E +LR        +W  H+ L++ +YNN+  S+  M P+E +  Y      L    E+        E  Q T    + ++E+L     + + Y +
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEAL--YGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYAN

Query:  KRRRNL-EFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARI-HDVFHVSMLRKY
         + + + EFQ GD V +K +         +  K +P + G + ++++ GP  Y L+LP  +  +    FHVS L KY
Subjt:  KRRRNL-EFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARI-HDVFHVSMLRKY

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

2.2e-32

34.8

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER
        MDF+ GLP TS+  + I V+V R +K   FI+ + T    QL       I S HG P +I SDRD R T+  +  L K +G     S++ HPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKT--LVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYAN
        TIQTL  +LRA V     +W  +LP +EF YN++   ++G +P+E   G    T  +   +EV  R     EL +         +E L+ AQ    +  N
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKT--LVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYAN

Query:  KRRRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLR
        +RR+ L    GD V +      A F      K    Y+G ++++K++   AY L+L     + H V +V  L+
Subjt:  KRRRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLR

Q99315 Transposon Ty3-G Gag-Pol polyprotein

1.5e-33

33.56

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER
        MDF+ GLP TS+  + I V+V R +K   FI+ + T    QL       I S HG P +I SDRD R T+  +  L K +G     S++ HPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKT--LVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYAN
        TIQTL  +LRA       +W  +LP +EF YN++   ++G +P+E   G    T  +   +EV  R     EL +         +E L+ AQ    +  N
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKT--LVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYAN

Query:  KRRRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLRKYIPDPLHMLQEQPVELKE
        +RR+ L    GD V +      A F      K    Y+G ++++K++   AY L+L     + H V +V  L+K++  P    + +P+   E
Subjt:  KRRRNLEFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLRKYIPDPLHMLQEQPVELKE

Q9UR07 Transposon Tf2-11 polyprotein

4.2e-31

30.69

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Query:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER
        MDF+  LP  SSG++ ++V+V R +K    +    + T +Q AR +  ++I+  G P  I++D D  FTS+ W          +KFS  + PQTDGQ+ER
Subjt:  MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEAL--YGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYAN
        T QT+E +LR        +W  H+ L++ +YNN+  S+  M P+E +  Y      L    E+        E  Q T    + ++E+L     + + Y +
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEAL--YGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYAN

Query:  KRRRNL-EFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARI-HDVFHVSMLRKY
         + + + EFQ GD V +K +         +  K +P + G + ++++ GP  Y L+LP  +  +    FHVS L KY
Subjt:  KRRRNL-EFQAGDQVFLKLSPWRAVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARI-HDVFHVSMLRKY

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATTTTCTATTTGGATTACCTCGTACATCTAGTGGACATGATGGTATATGGGTAATAGTAGTTAGACTCACGAAGACGGTACGATTTATATCGATTAAAGCGACATC
TACGTTAGACCAGTTAGCTAGATCATATGTTGATAAGATTATTAGTCAGCATGGAGTACCAGTGTCCATAGTTTCAGATAGGGATCCGAGGTTTACTTCTAAATTTTGGC
ATAGTTTACAGAAAGCAATGGGAACAGGGCTAAAGTTTAGTACATCATTTCATCCCCAAACAGACGGTCAGTCCGAGAGGACAATCCAAACTTTAGAGGACATGTTGAGA
GCATGTGTCCTTCAACTTAAAGGAAGTTGGGATACCCACTTGCCACTTATGGAGTTTGCTTATAATAATAGCTATCAATCTAGTATCGGTATGGCACCATATGAGGCCTT
ATACGGGAGACCATGCAAAACTCTTGTGTGTTGGAATGAAGTGGGAGAGCGAAAGTTAGTAGGTCCTGAGTTGGTTCAGACTACGACAAACAATATTAAGTTAATTAGAG
AAAACCTGAAGATAGCCCAAGATCGGCAGAGAAGTTATGCAAATAAGCGACGAAGAAACTTAGAATTCCAAGCTGGAGATCAAGTTTTCTTGAAATTATCTCCATGGCGA
GCTGTTTTTCATTTCAGAAGAAAAGGTAAGTTCAGTCCTAGATATATTGGGTCATATCAGATAATGAAACGAGTGGGACCAGCAGCATATAGACTTGAGTTGCCAATAAA
ACTTGCTCGAATACATGATGTTTTCCATGTATCCATGTTAAGAAAATATATACCAGATCCATTACATATGTTGCAAGAGCAACCAGTTGAATTAAAAGAAGATTTGAGTT
ATGTTGAAGCACCATTTTAG

mRNA sequence

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Protein sequence

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MDFLFGLPRTSSGHDGIWVIVVRLTKTVRFISIKATSTLDQLARSYVDKIISQHGVPVSIVSDRDPRFTSKFWHSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLR
ACVLQLKGSWDTHLPLMEFAYNNSYQSSIGMAPYEALYGRPCKTLVCWNEVGERKLVGPELVQTTTNNIKLIRENLKIAQDRQRSYANKRRRNLEFQAGDQVFLKLSPWR
AVFHFRRKGKFSPRYIGSYQIMKRVGPAAYRLELPIKLARIHDVFHVSMLRKYIPDPLHMLQEQPVELKEDLSYVEAPF

Cmc08g0222341 (gene) of Melon (Charmono) v1.1 genome