; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0222461 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0222461
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr08:11250570..11251436
RNA-Seq ExpressionCmc08g0222461
SyntenyCmc08g0222461
Gene Ontology termsGO:0006468 - protein phosphorylation (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004672 - protein kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RZB46718.1 Transposon Ty3-G Gag-Pol polyprotein [Glycine soja]1.1e-11566.89Show/hide
Query:  MQNGWRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYFCF-----GFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDII
        +QN WR+CIDY +LN++TKKDHFPLPF+D+M+EHL G+S++CF     G+ QI IA +DQ+KTTFTC +GT+A+RRMPFGLCNAPGTFQRCM+SIFSD +
Subjt:  MQNGWRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYFCF-----GFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDII

Query:  ENCIEVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIK
        ENCIEVFMDDFT+YG SFD CL SLE +LNRCI+TNLVLN+EKCHFMV  GIVLGH++S+KGIE+D  KI VI +L Y +C+++VRSFLG A FYR  I+
Subjt:  ENCIEVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIK

Query:  DFS---MPLTNILQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK
        DFS   +PL N+LQK+V F  +D CK+AFD LK+ L +TPI+Q+P+W  PFE+MCDASN ALGA L Q IDK    IY+ASRTL+ AQ NYTTTEK
Subjt:  DFS---MPLTNILQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK

XP_021603241.1 uncharacterized protein LOC110608326 [Manihot esculenta]1.6e-11766.89Show/hide
Query:  MQNGWRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYFC-----FGFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDII
        +QNGWR+CIDY KLN +T+KDHFPLPF+D+M+E L G+S+FC      GFYQIP+A +DQ+KTTFTC +GT+A+RRMPFGLCNAP TFQRCM+SIFS+ +
Subjt:  MQNGWRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYFC-----FGFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDII

Query:  ENCIEVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIK
        E  IEVFMDDFT+YG+SFDECL +L  IL RC+++NLVLNYEKCHFMV  G++LGH VS++GIE+DK K+DVI+ L Y TC++D+RSFLG A FYR  IK
Subjt:  ENCIEVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIK

Query:  DFS---MPLTNILQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK
        DFS    PL  +LQKDVPF  D+ C++AF+ LK++LV+ PI+Q+PNW+ PFEIMCDASN ALGA LGQ IDKK H I +ASRTL++AQ NYTTTEK
Subjt:  DFS---MPLTNILQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK

XP_031392147.1 uncharacterized protein LOC116204210 [Punica granatum]2.6e-11565.88Show/hide
Query:  MQNGWRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYFCF-----GFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDII
        +QNGWR+CIDY KLN  T+KDHFPLPF+D+M+E L G+SYFCF     G+YQI +A +DQ+KTTFTC +GT+A+RRMPFGLC+APGTFQRCMMSIFSD+I
Subjt:  MQNGWRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYFCF-----GFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDII

Query:  ENCIEVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIK
        ENCIEVFMDDFT++GDSFD CLA+L  +L+RCI++NLVLNYEKCHFMV HGIVLGH++SS+GIE+DK+K+D+I  L Y + ++ +RSFLG A FYR  IK
Subjt:  ENCIEVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIK

Query:  DFS---MPLTNILQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK
        DFS    PL ++LQKD  F+   NC++AFD LK+ L S PI+Q P+W LPFEIM DAS+ A+GA LGQ +DK+ H IY+AS+TL+ AQ NY+TTEK
Subjt:  DFS---MPLTNILQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK

XP_031392309.1 uncharacterized protein LOC116204368 [Punica granatum]8.8e-11666.22Show/hide
Query:  MQNGWRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYFCF-----GFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDII
        +QNGWR+CIDY KLN  T+KDHFPLPF+D+M+E L G+SYFCF     G+YQI +A +DQ+KTTFTC +GT+A+RRMPFGLC+APGTFQRCMMSIFSD+I
Subjt:  MQNGWRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYFCF-----GFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDII

Query:  ENCIEVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIK
        ENCIEVFMDDFT+YGDSFD CLA+L  +L+RCI++NLVLNYEKCHFMV HGIVLGH++SS+GIE+DK+K+D+I  L Y + ++ +RSFLG A FYR  IK
Subjt:  ENCIEVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIK

Query:  DFS---MPLTNILQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK
        DFS    PL ++LQKD  F+   NC++AFD LK+ L S PI+Q P+W LPFEIM DAS+ A+GA LGQ +DK+ H IY+AS+TL+ AQ NY+TTEK
Subjt:  DFS---MPLTNILQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK

XP_031402684.1 uncharacterized protein LOC116212259 [Punica granatum]2.6e-11565.88Show/hide
Query:  MQNGWRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYFCF-----GFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDII
        +QNGWR+CIDY KLN  T+KDHFPLPF+D+M+E L G+SYFCF     G+YQI +A +DQ+KTTFTC +GT+A+RRMPFGLC+APGTFQRCMMSIFSD+I
Subjt:  MQNGWRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYFCF-----GFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDII

Query:  ENCIEVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIK
        ENCIEVFMDDFT++GDSFD CLA+L  +L+RCI++NLVLNYEKCHFMV HGIVLGH++SS+GIE+DK+K+D+I  L Y + ++ +RSFLG A FYR  IK
Subjt:  ENCIEVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIK

Query:  DFS---MPLTNILQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK
        DFS    PL ++LQKD  F+   NC++AFD LK+ L S PI+Q P+W LPFEIM DAS+ A+GA LGQ +DK+ H IY+AS+TL+ AQ NY+TTEK
Subjt:  DFS---MPLTNILQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK

TrEMBL top hitse value%identityAlignment
A0A0L9TXH6 Reverse transcriptase3.6e-11565.88Show/hide
Query:  MQNGWRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYFCF-----GFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDII
        +QN WR+CIDY +LN+ T+KDHFPLPF+D+M+E L G+S++CF     G++QI I+ +DQ+KTTFTC +GT+A+RRMPFGLCNAPGTFQRCM+SIFSD +
Subjt:  MQNGWRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYFCF-----GFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDII

Query:  ENCIEVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIK
        ENCIEVFMDDFT+YG SFD CL SL+ +L RCI TNLVLN+EKCHFMV  G+VLGH++SSKGIE+D  KI VI +L Y +C+++VRSFLG A FYR  IK
Subjt:  ENCIEVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIK

Query:  DFS---MPLTNILQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK
        DFS   +PL+ +LQKD+ F  DD CK+AFD LKQ L++TPI+Q+P+W  PFE+MCDASN ALGA L Q IDK    IY+ASRTL+ AQ NYTTTEK
Subjt:  DFS---MPLTNILQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK

A0A445FCZ8 Reverse transcriptase5.6e-11666.89Show/hide
Query:  MQNGWRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYFCF-----GFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDII
        +QN WR+CIDY +LN++TKKDHFPLPF+D+M+EHL G+S++CF     G+ QI IA +DQ+KTTFTC +GT+A+RRMPFGLCNAPGTFQRCM+SIFSD +
Subjt:  MQNGWRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYFCF-----GFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDII

Query:  ENCIEVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIK
        ENCIEVFMDDFT+YG SFD CL SLE +LNRCI+TNLVLN+EKCHFMV  GIVLGH++S+KGIE+D  KI VI +L Y +C+++VRSFLG A FYR  I+
Subjt:  ENCIEVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIK

Query:  DFS---MPLTNILQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK
        DFS   +PL N+LQK+V F  +D CK+AFD LK+ L +TPI+Q+P+W  PFE+MCDASN ALGA L Q IDK    IY+ASRTL+ AQ NYTTTEK
Subjt:  DFS---MPLTNILQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK

A0A6P8D4X0 Reverse transcriptase1.2e-11565.88Show/hide
Query:  MQNGWRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYFCF-----GFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDII
        +QNGWR+CIDY KLN  T+KDHFPLPF+D+M+E L G+SYFCF     G+YQI +A +DQ+KTTFTC +GT+A+RRMPFGLC+APGTFQRCMMSIFSD+I
Subjt:  MQNGWRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYFCF-----GFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDII

Query:  ENCIEVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIK
        ENCIEVFMDDFT++GDSFD CLA+L  +L+RCI++NLVLNYEKCHFMV HGIVLGH++SS+GIE+DK+K+D+I  L Y + ++ +RSFLG A FYR  IK
Subjt:  ENCIEVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIK

Query:  DFS---MPLTNILQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK
        DFS    PL ++LQKD  F+   NC++AFD LK+ L S PI+Q P+W LPFEIM DAS+ A+GA LGQ +DK+ H IY+AS+TL+ AQ NY+TTEK
Subjt:  DFS---MPLTNILQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK

A0A6P8DCT8 Reverse transcriptase4.3e-11666.22Show/hide
Query:  MQNGWRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYFCF-----GFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDII
        +QNGWR+CIDY KLN  T+KDHFPLPF+D+M+E L G+SYFCF     G+YQI +A +DQ+KTTFTC +GT+A+RRMPFGLC+APGTFQRCMMSIFSD+I
Subjt:  MQNGWRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYFCF-----GFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDII

Query:  ENCIEVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIK
        ENCIEVFMDDFT+YGDSFD CLA+L  +L+RCI++NLVLNYEKCHFMV HGIVLGH++SS+GIE+DK+K+D+I  L Y + ++ +RSFLG A FYR  IK
Subjt:  ENCIEVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIK

Query:  DFS---MPLTNILQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK
        DFS    PL ++LQKD  F+   NC++AFD LK+ L S PI+Q P+W LPFEIM DAS+ A+GA LGQ +DK+ H IY+AS+TL+ AQ NY+TTEK
Subjt:  DFS---MPLTNILQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK

A0A6P8E830 Reverse transcriptase1.2e-11565.88Show/hide
Query:  MQNGWRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYFCF-----GFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDII
        +QNGWR+CIDY KLN  T+KDHFPLPF+D+M+E L G+SYFCF     G+YQI +A +DQ+KTTFTC +GT+A+RRMPFGLC+APGTFQRCMMSIFSD+I
Subjt:  MQNGWRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYFCF-----GFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDII

Query:  ENCIEVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIK
        ENCIEVFMDDFT++GDSFD CLA+L  +L+RCI++NLVLNYEKCHFMV HGIVLGH++SS+GIE+DK+K+D+I  L Y + ++ +RSFLG A FYR  IK
Subjt:  ENCIEVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIK

Query:  DFS---MPLTNILQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK
        DFS    PL ++LQKD  F+   NC++AFD LK+ L S PI+Q P+W LPFEIM DAS+ A+GA LGQ +DK+ H IY+AS+TL+ AQ NY+TTEK
Subjt:  DFS---MPLTNILQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.69.6e-4938.23Show/hide
Query:  WRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYF-----CFGFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDIIENCI
        +R+ IDY KLNEIT  D  P+P +DE++  L   +YF       GF+QI +  +   KT F+  +G Y + RMPFGL NAP TFQRCM  I   ++    
Subjt:  WRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYF-----CFGFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDIIENCI

Query:  EVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIKDF--
         V++DD  ++  S DE L SL L+  +  K NL L  +KC F+      LGH+++  GI+ +  KI+ IQK    T  K++++FLG   +YR  I +F  
Subjt:  EVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIKDF--

Query:  -SMPLTNILQKDVPF-LIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK
         + P+T  L+K++     +     AF  LK  +   PIL+ P++   F +  DAS++ALGA L Q      H + + SRTLN+ + NY+T EK
Subjt:  -SMPLTNILQKDVPF-LIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK

P10394 Retrovirus-related Pol polyprotein from transposon 4124.2e-4436.64Show/hide
Query:  WRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYF-CF----GFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDIIENCI
        WR+ IDY ++N+    D FPLP +D++++ L    YF C     GF+QI +    +  T+F+   G+Y F R+PFGL  AP +FQR M   FS I  +  
Subjt:  WRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYF-CF----GFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDIIENCI

Query:  EVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIK---D
         ++MDD  + G S    L +L  +  +C + NL L+ EKC F +     LGH  + KGI  D  K DVIQ           R F+   ++YR  IK   D
Subjt:  EVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIK---D

Query:  FSMPLTNILQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK
        +S  +T + +K+VPF   D C+KAF  LK +L++  +LQ P+++  F I  DAS  A GA L Q  +     + +ASR   + + N +TTE+
Subjt:  FSMPLTNILQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK

P10401 Retrovirus-related Pol polyprotein from transposon gypsy2.6e-3832.67Show/hide
Query:  RMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYFC-----FGFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDIIENCIE
        R+ ID+ KLNE T  D +P+P +  ++ +L    +F       G++QI +A  D++KT+F+ + G Y F R+PFGL NA   FQR +  +  + I     
Subjt:  RMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYFC-----FGFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDIIENCIE

Query:  VFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIKDF---
        V++DD  I+ ++  + +  ++ +L   I  N+ ++ EK  F       LG +VS  G + D  K+  IQ+     C+  VRSFLG A +YR  IKDF   
Subjt:  VFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIKDF---

Query:  SMPLTNILQ-----------KDVPFLIDDNCKKAFDDLKQRLVSTP-ILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTT
        + P+T+IL+           K +P   ++  + AF  L+  L S   IL+ P++  PF++  DAS     +G+G ++ ++   I   SRTL Q + NY T
Subjt:  SMPLTNILQ-----------KDVPFLIDDNCKKAFDDLKQRLVSTP-ILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTT

Query:  TEK
         E+
Subjt:  TEK

P20825 Retrovirus-related Pol polyprotein from transposon 2972.4e-4738.59Show/hide
Query:  NGWRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYF-----CFGFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDIIEN
        N +R+ IDY KLNEIT  D +P+P +DE++  L    YF       GF+QI +  +   KT F+   G Y + RMPFGL NAP TFQRCM +I   ++  
Subjt:  NGWRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYF-----CFGFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDIIEN

Query:  CIEVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLI---
           V++DD  I+  S  E L S++L+  +    NL L  +KC F+      LGH+V+  GI+ +  K+  I      T  K++R+FLG   +YR  I   
Subjt:  CIEVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLI---

Query:  KDFSMPLTNILQKDVPFLIDDNCK----KAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK
         D + P+T+ L+K       D  K    +AF+ LK  ++  PILQ P++   F +  DASNLALGA L Q      H I   SRTLN  + NY+  EK
Subjt:  KDFSMPLTNILQKDVPFLIDDNCK----KAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus3.8e-4534.65Show/hide
Query:  WRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYF-----CFGFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDIIENCI
        +RM +D+ +LN +T  D +P+P ++  +  L    YF       GF+QI +   D  KT F+   G Y F R+PFGL NAP  FQR +  I  + I    
Subjt:  WRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYF-----CFGFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDIIENCI

Query:  EVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIKDF--
         V++DD  ++ + +D    +L L+L    K NL +N EK HF+      LG++V++ GI+ D  K+  I ++   T +K+++ FLG   +YR  I+D+  
Subjt:  EVFMDDFTIYGDSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIKDF--

Query:  -SMPLTNILQ-----------KDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTT
         + PLTN+ +             VP  +D+   ++F+DLK  L S+ IL  P +  PF +  DASN A+GA L Q    +   I + SR+LN+ + NY T
Subjt:  -SMPLTNILQ-----------KDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTT

Query:  TEK
         EK
Subjt:  TEK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAATGGTTGGAGAATGTGCATAGATTATTGGAAACTCAATGAGATAACAAAAAAGGATCATTTCCCTTTACCTTTTCTCGATGAAATGATAGAACACTTAACGGG
TAGATCATATTTTTGTTTCGGCTTTTACCAAATTCCTATAGCATGTAAAGACCAAAAGAAAACAACTTTTACTTGTGATTATGGAACTTATGCATTTAGGCGTATGCCAT
TTGGTCTTTGTAATGCACCGGGCACGTTCCAACGTTGCATGATGAGCATATTTTCCGACATTATTGAAAATTGCATTGAAGTTTTCATGGATGATTTCACAATTTATGGT
GATAGTTTTGATGAATGTTTAGCCAGTCTAGAATTAATTCTAAATAGATGCATAAAAACTAACCTTGTCTTGAATTATGAAAAGTGTCATTTCATGGTGTTTCATGGTAT
AGTTTTAGGACACTTAGTGTCTTCAAAAGGAATAGAGCTAGATAAAACAAAAATTGACGTTATACAAAAATTGTCATATTCAACATGTTTAAAAGATGTTAGATCCTTCC
TTGGTAGTGCCGACTTTTATAGATGGTTAATAAAAGATTTTTCTATGCCTCTAACTAATATCTTACAAAAAGATGTACCATTTCTAATCGATGACAATTGTAAGAAGGCA
TTTGATGATCTCAAACAAAGGTTAGTCTCTACCCCTATCCTTCAATCTCCTAATTGGAATTTACCTTTCGAAATAATGTGTGATGCAAGCAACTTAGCATTAGGAGCTGG
TTTAGGACAAATGATAGATAAAAAATTGCATGCTATATACCATGCATCTAGGACCCTTAACCAAGCACAATTTAACTACACCACAACTGAAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAATGGTTGGAGAATGTGCATAGATTATTGGAAACTCAATGAGATAACAAAAAAGGATCATTTCCCTTTACCTTTTCTCGATGAAATGATAGAACACTTAACGGG
TAGATCATATTTTTGTTTCGGCTTTTACCAAATTCCTATAGCATGTAAAGACCAAAAGAAAACAACTTTTACTTGTGATTATGGAACTTATGCATTTAGGCGTATGCCAT
TTGGTCTTTGTAATGCACCGGGCACGTTCCAACGTTGCATGATGAGCATATTTTCCGACATTATTGAAAATTGCATTGAAGTTTTCATGGATGATTTCACAATTTATGGT
GATAGTTTTGATGAATGTTTAGCCAGTCTAGAATTAATTCTAAATAGATGCATAAAAACTAACCTTGTCTTGAATTATGAAAAGTGTCATTTCATGGTGTTTCATGGTAT
AGTTTTAGGACACTTAGTGTCTTCAAAAGGAATAGAGCTAGATAAAACAAAAATTGACGTTATACAAAAATTGTCATATTCAACATGTTTAAAAGATGTTAGATCCTTCC
TTGGTAGTGCCGACTTTTATAGATGGTTAATAAAAGATTTTTCTATGCCTCTAACTAATATCTTACAAAAAGATGTACCATTTCTAATCGATGACAATTGTAAGAAGGCA
TTTGATGATCTCAAACAAAGGTTAGTCTCTACCCCTATCCTTCAATCTCCTAATTGGAATTTACCTTTCGAAATAATGTGTGATGCAAGCAACTTAGCATTAGGAGCTGG
TTTAGGACAAATGATAGATAAAAAATTGCATGCTATATACCATGCATCTAGGACCCTTAACCAAGCACAATTTAACTACACCACAACTGAAAAATAA
Protein sequenceShow/hide protein sequence
MQNGWRMCIDYWKLNEITKKDHFPLPFLDEMIEHLTGRSYFCFGFYQIPIACKDQKKTTFTCDYGTYAFRRMPFGLCNAPGTFQRCMMSIFSDIIENCIEVFMDDFTIYG
DSFDECLASLELILNRCIKTNLVLNYEKCHFMVFHGIVLGHLVSSKGIELDKTKIDVIQKLSYSTCLKDVRSFLGSADFYRWLIKDFSMPLTNILQKDVPFLIDDNCKKA
FDDLKQRLVSTPILQSPNWNLPFEIMCDASNLALGAGLGQMIDKKLHAIYHASRTLNQAQFNYTTTEK