; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0222501 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0222501
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr08:11337635..11338555
RNA-Seq ExpressionCmc08g0222501
SyntenyCmc08g0222501
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0043227 - membrane-bounded organelle (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047433.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.5e-16997.39Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCID RELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAP VFMDLMNRVF+EFLDTFVIVFI+DILIY+KTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
        VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRK APFVWSKACE+SFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQ
        GCVLMQ
Subjt:  GCVLMQ

KAA0048687.1 pol protein [Cucumis melo var. makuwa]2.8e-16897.39Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCID RELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAP VFMDLMNRVF+EFLDTFVIVFI+DILIY+KTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
        VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRK APFVWSKACE+SFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQ
        GCVLMQ
Subjt:  GCVLMQ

KAA0051051.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-16897.06Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCID RELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIK+GDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAP VFMDLMNRVF+EFLDTFVIVFI+DILIY+KTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
        VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRK APFVWSKACE+SFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQ
        GCVLMQ
Subjt:  GCVLMQ

KAA0053234.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.3e-16997.39Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAP VFMDLMNRVF+EFLDTFVIVFI+DILIY+KTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
        VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRK APFVWSKACE+SFQNLKQKLVTAPVLTVP+GSGSFVIYSDA KKGL
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQ
        GCVLMQ
Subjt:  GCVLMQ

KAA0053368.1 pol protein [Cucumis melo var. makuwa]4.7e-16896.73Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCID RELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAP VFM+LMNRVF+EFLDTFVIVFI+DILIY+KTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
        VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRK APFVWSKACE+SFQNLKQKLVTAP+LTVPDGSGSFVIYSDASKKGL
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQ
        GCVLMQ
Subjt:  GCVLMQ

TrEMBL top hitse value%identityAlignment
A0A5A7TV57 Ty3-gypsy retrotransposon protein4.6e-16997.39Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCID RELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAP VFMDLMNRVF+EFLDTFVIVFI+DILIY+KTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
        VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRK APFVWSKACE+SFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQ
        GCVLMQ
Subjt:  GCVLMQ

A0A5A7U330 Reverse transcriptase1.3e-16897.39Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCID RELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAP VFMDLMNRVF+EFLDTFVIVFI+DILIY+KTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
        VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRK APFVWSKACE+SFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQ
        GCVLMQ
Subjt:  GCVLMQ

A0A5A7UC07 Reverse transcriptase1.3e-16897.06Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCID RELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIK+GDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAP VFMDLMNRVF+EFLDTFVIVFI+DILIY+KTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
        VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRK APFVWSKACE+SFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQ
        GCVLMQ
Subjt:  GCVLMQ

A0A5A7UDB1 Reverse transcriptase3.5e-16997.39Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAP VFMDLMNRVF+EFLDTFVIVFI+DILIY+KTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
        VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRK APFVWSKACE+SFQNLKQKLVTAPVLTVP+GSGSFVIYSDA KKGL
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQ
        GCVLMQ
Subjt:  GCVLMQ

A0A5A7UE75 Reverse transcriptase2.3e-16896.73Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCID RELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAP VFM+LMNRVF+EFLDTFVIVFI+DILIY+KTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
        VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRK APFVWSKACE+SFQNLKQKLVTAP+LTVPDGSGSFVIYSDASKKGL
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQ
        GCVLMQ
Subjt:  GCVLMQ

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.2e-6037.58Show/hide
Query:  KELKVQLQELLDKGFIRPSVSPWGAPVLFV-KKKDGS----MRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKT
        +E++ Q+Q++L++G IR S SP+ +P+  V KK+D S     R+ ID R+LN++TV +R+P+P +D++  +L     F+ IDL  G+HQ+ +    V KT
Subjt:  KELKVQLQELLDKGFIRPSVSPWGAPVLFV-KKKDGS----MRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKT

Query:  AFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGV
        AF +++GHYE++ M FGL NAP  F   MN + +  L+   +V+++DI++++ +  EH + L +V + L    L  +  KCEF  ++ +FLGHV++  G+
Subjt:  AFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGV

Query:  SVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPF-VWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
          +P KIEA+  +  P+   E+++FLGL GYYR+F+ NF+ IA P+T+  +K       +   +++F+ LK  +   P+L VPD +  F + +DAS   L
Subjt:  SVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPF-VWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQ
        G VL Q
Subjt:  GCVLMQ

P0CT34 Transposon Tf2-1 polyprotein1.3e-5936.6Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +D + LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
         AFR   G +E++VM +G++ AP  F   +N +  E  ++ V+ +++DILI++K+E+EH +H++ VLQ L++  L    +KCEF   QV F+G+ +S+ G
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
         +     I+ V  W +P    E+R FLG   Y R+F+   S++  PL  L +K   + W+     + +N+KQ LV+ PVL   D S   ++ +DAS   +
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQ
        G VL Q
Subjt:  GCVLMQ

P0CT35 Transposon Tf2-2 polyprotein1.3e-5936.6Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +D + LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
         AFR   G +E++VM +G++ AP  F   +N +  E  ++ V+ +++DILI++K+E+EH +H++ VLQ L++  L    +KCEF   QV F+G+ +S+ G
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
         +     I+ V  W +P    E+R FLG   Y R+F+   S++  PL  L +K   + W+     + +N+KQ LV+ PVL   D S   ++ +DAS   +
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQ
        G VL Q
Subjt:  GCVLMQ

P0CT41 Transposon Tf2-12 polyprotein1.3e-5936.6Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +D + LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
         AFR   G +E++VM +G++ AP  F   +N +  E  ++ V+ +++DILI++K+E+EH +H++ VLQ L++  L    +KCEF   QV F+G+ +S+ G
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
         +     I+ V  W +P    E+R FLG   Y R+F+   S++  PL  L +K   + W+     + +N+KQ LV+ PVL   D S   ++ +DAS   +
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQ
        G VL Q
Subjt:  GCVLMQ

P20825 Retrovirus-related Pol polyprotein from transposon 2972.1e-6237.7Show/hide
Query:  ELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD-----GSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA
        E++ Q+QE+L++G IR S SP+ +P   V KK         R+ ID R+LN++T+ +RYP+P +D++  +L     F+ IDL  G+HQ+ + +  + KTA
Subjt:  ELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD-----GSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA

Query:  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVS
        F ++ GHYE++ M FGL NAP  F   MN + +  L+   +V+++DI+I++ +  EH   +++V   L D  L  +  KCEF  K+ +FLGH+V+  G+ 
Subjt:  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVS

Query:  VDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSK-ACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLG
         +P K++A+  +  P+   E+R+FLGL GYYR+F+ N++ IA P+T   +KR      K     +F+ LK  ++  P+L +PD    FV+ +DAS   LG
Subjt:  VDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSK-ACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLG

Query:  CVLMQ
         VL Q
Subjt:  CVLMQ

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.3e-2745.8Show/hide
Query:  HLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVW
        HL MVLQ    ++ YA   KC F   Q+++LG  H++S  GVS DPAK+EA+ GW  P   +E+R FLGL GYYRRFV+N+ +I  PLT+L +K +   W
Subjt:  HLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVW

Query:  SKACENSFQNLKQKLVTAPVLTVPDGSGSFV
        ++    +F+ LK  + T PVL +PD    FV
Subjt:  SKACENSFQNLKQKLVTAPVLTVPDGSGSFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCCCGCAGAGCTGAAAGAACTGAAGGTGCAGTTACAGGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTTTTATTCGTTAA
GAAGAAGGATGGATCGATGCGTCTATGCATTGACAATAGGGAGTTGAACAAGGTAACCGTAAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTAC
AGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATACCATCAGCTGAGGATTAAGGATGGTGATGTACCAAAGACAGCATTTCGTTCCAGGTATGGACACTAC
GAGTTTATCGTGATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTTATGGACTTGATGAACAGAGTGTTTAAGGAGTTCCTAGATACTTTTGTGATCGTGTTTATCAA
CGATATCTTGATATACACCAAGACGGAGGCCGAACATGAGGAGCATTTACGTATGGTTTTGCAAACACTTCGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGT
TTTGGCTGAAGCAGGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCGGTTGGACCCGACCTTCCACAGTC
AGTGAGGTTCGTAGCTTTTTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTCACTCAGTTGACTAGGAAGAGAGCTCCTTT
TGTTTGGAGCAAGGCATGTGAGAACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACCGCACCGGTTCTTACTGTACCTGATGGTTCTGGCAGTTTTGTGATTTATAGTG
ATGCTTCCAAGAAGGGTTTGGGTTGTGTTTTGATGCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCCCCGCAGAGCTGAAAGAACTGAAGGTGCAGTTACAGGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTTTTATTCGTTAA
GAAGAAGGATGGATCGATGCGTCTATGCATTGACAATAGGGAGTTGAACAAGGTAACCGTAAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTAC
AGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATACCATCAGCTGAGGATTAAGGATGGTGATGTACCAAAGACAGCATTTCGTTCCAGGTATGGACACTAC
GAGTTTATCGTGATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTTATGGACTTGATGAACAGAGTGTTTAAGGAGTTCCTAGATACTTTTGTGATCGTGTTTATCAA
CGATATCTTGATATACACCAAGACGGAGGCCGAACATGAGGAGCATTTACGTATGGTTTTGCAAACACTTCGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGT
TTTGGCTGAAGCAGGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCGGTTGGACCCGACCTTCCACAGTC
AGTGAGGTTCGTAGCTTTTTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTCACTCAGTTGACTAGGAAGAGAGCTCCTTT
TGTTTGGAGCAAGGCATGTGAGAACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACCGCACCGGTTCTTACTGTACCTGATGGTTCTGGCAGTTTTGTGATTTATAGTG
ATGCTTCCAAGAAGGGTTTGGGTTGTGTTTTGATGCAGTAG
Protein sequenceShow/hide protein sequence
MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDNRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHY
EFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFINDILIYTKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTV
SEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKRAPFVWSKACENSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQ