; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0222701 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0222701
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrotransposon protein
Genome locationCMiso1.1chr08:11749581..11750908
RNA-Seq ExpressionCmc08g0222701
SyntenyCmc08g0222701
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042482.1 hypothetical protein E6C27_scaffold246G00290 [Cucumis melo var. makuwa]1.3e-0669.05Show/hide
Query:  MTCHMGTQFCFRVYVSVFQHYVFNENLVFPCFKKCLLSLFLF
        +TCHMGTQFCF VYVSVFQ+ +FNENLVFP FKK  + +  F
Subjt:  MTCHMGTQFCFRVYVSVFQHYVFNENLVFPCFKKCLLSLFLF
KAA0047141.1 hypothetical protein E6C27_scaffold83G00010 [Cucumis melo var. makuwa]1.5e-1279.59Show/hide
Query:  MTCHMGTQFCFRVYVSVFQHYVFNENLVFPCFKKCLLSLFLFSNNLSLI
        +TCHMGT+FCF VYVS+FQH VFNEN VFP  KKCLLSLFLFSN+LSL+
Subjt:  MTCHMGTQFCFRVYVSVFQHYVFNENLVFPCFKKCLLSLFLFSNNLSLI
KAA0047173.1 hypothetical protein E6C27_scaffold83G00480 [Cucumis melo var. makuwa]7.7e-0488.46Show/hide
Query:  MTCHMGTQFCFRVYVSVFQHYVFNEN
        +TCHMGTQFCF VYVSVFQH VFNEN
Subjt:  MTCHMGTQFCFRVYVSVFQHYVFNEN
KAA0066181.1 uncharacterized protein E6C27_scaffold21G001920 [Cucumis melo var. makuwa]4.3e-0771.43Show/hide
Query:  MTCHMGTQFCFRVYVSVFQHYVFNENLVFPCFKKCLLSLFLF
        +TCH+GTQFCFRVYVSVFQ+ VFNENLVFP FKK  + +  F
Subjt:  MTCHMGTQFCFRVYVSVFQHYVFNENLVFPCFKKCLLSLFLF
TYK11698.1 Retrotransposon protein [Cucumis melo var. makuwa]6.3e-0686.67Show/hide
Query:  MTCHMGTQFCFRVYVSVFQHYVFNENLVFP
        +TCHMGTQFCFRVYVSVFQ+ VFN+NLVFP
Subjt:  MTCHMGTQFCFRVYVSVFQHYVFNENLVFP
TrEMBL top hitse value%identityAlignment
A0A5A7TUC6 Uncharacterized protein3.7e-0488.46Show/hide
Query:  MTCHMGTQFCFRVYVSVFQHYVFNEN
        +TCHMGTQFCF VYVSVFQH VFNEN
Subjt:  MTCHMGTQFCFRVYVSVFQHYVFNEN
A0A5A7U0M0 Uncharacterized protein7.5e-1379.59Show/hide
Query:  MTCHMGTQFCFRVYVSVFQHYVFNENLVFPCFKKCLLSLFLFSNNLSLI
        +TCHMGT+FCF VYVS+FQH VFNEN VFP  KKCLLSLFLFSN+LSL+
Subjt:  MTCHMGTQFCFRVYVSVFQHYVFNENLVFPCFKKCLLSLFLFSNNLSLI
A0A5D3CKK9 Retrotransposon protein3.0e-0686.67Show/hide
Query:  MTCHMGTQFCFRVYVSVFQHYVFNENLVFP
        +TCHMGTQFCFRVYVSVFQ+ VFN+NLVFP
Subjt:  MTCHMGTQFCFRVYVSVFQHYVFNENLVFP
A0A5D3CTN7 Uncharacterized protein2.1e-0771.43Show/hide
Query:  MTCHMGTQFCFRVYVSVFQHYVFNENLVFPCFKKCLLSLFLF
        +TCH+GTQFCFRVYVSVFQ+ VFNENLVFP FKK  + +  F
Subjt:  MTCHMGTQFCFRVYVSVFQHYVFNENLVFPCFKKCLLSLFLF
A0A5D3DH51 Uncharacterized protein6.1e-0769.05Show/hide
Query:  MTCHMGTQFCFRVYVSVFQHYVFNENLVFPCFKKCLLSLFLF
        +TCHMGTQFCF VYVSVFQ+ +FNENLVFP FKK  + +  F
Subjt:  MTCHMGTQFCFRVYVSVFQHYVFNENLVFPCFKKCLLSLFLF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTCAGCATTATGTTTTTAATGAAAATTTAGTCTTCCCTTGTTTCAAAAAATGTCTCTT
GTCATTGTTTCTTTTTAGTAATAACCTCAGCTTAATATAA
mRNA sequenceShow/hide mRNA sequence
GAAAAAGGTTCTTTATCTTCTTCTATAAGATAACCCTCTGTTGTCGCCGCCTCATTAGTTGAAGTTAAGATTGGTCTCTTTGGAAGCTTGAGGATTTAAAGTGATTGAAT
TTTTTCCATCAAGGATAAGAGGATTTTTCAACCTCCATCTGAGTAACCTTGGCGAAGGTAAAGGTAGAGGAAAGCTGGTGAGCGATAGAGAAGGATCCATGACATGCCAT
ATGGGGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTCAGCATTATGTTTTTAATGAAAATTTAGTCTTCCCTTGTTTCAAAAAATGTCTCTTGTCATTGTTTCT
TTTTAGTAATAACCTCAGCTTAATATAA
Protein sequenceShow/hide protein sequence
MTCHMGTQFCFRVYVSVFQHYVFNENLVFPCFKKCLLSLFLFSNNLSLI