CuGenDBv2

Gene ID	Cmc08g0222831
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr08:11927092..11927475
RNA-Seq Expression	Cmc08g0222831
Synteny	Cmc08g0222831
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036001.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

4.8e-58

91.34

Show/hide

Query:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW
        MPF LTNA AVFMD MNRIFHQYLDQFVI+FIDDILVYSVDRE+HE+HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFL H+VSAKGV VDPQKVEAVVNW
Subjt:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW

Query:  KRPTSAIEVRSFLGLAGYYRRFIEDFS
        +RPTSA EVRSFLGLAGYYRRFIEDFS
Subjt:  KRPTSAIEVRSFLGLAGYYRRFIEDFS

KAA0038417.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

5.7e-59

92.91

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Query:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW
        MPF LTNA AVFMDLMNRIFHQYLDQFVI+FIDDILVYSVDRE+HE+HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFL H+VSAKGVSVDPQKVEAVVNW
Subjt:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW

Query:  KRPTSAIEVRSFLGLAGYYRRFIEDFS
        +RPTSA EVRSFLGLAGYYRRFIEDFS
Subjt:  KRPTSAIEVRSFLGLAGYYRRFIEDFS

KAA0053222.1 hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa]

4.8e-58

92.13

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Query:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW
        M F LTNA AVFMDLMNRIFHQYLDQFVI+FIDDILVYSVDRE+HE+HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFL H+VSAKGVSVDPQKVEAVVNW
Subjt:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW

Query:  KRPTSAIEVRSFLGLAGYYRRFIEDFS
        +RPTSA EVRSFLGLAGYYRRFIEDFS
Subjt:  KRPTSAIEVRSFLGLAGYYRRFIEDFS

KAA0061419.1 reverse transcriptase [Cucumis melo var. makuwa]

1.8e-57

91.34

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Query:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW
        MPF LTNA  VFMDLMNRIFHQYLDQFVI+FIDDILVYSVDRE+HE+HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFL H+VSAKGVSVDPQKVEAVVNW
Subjt:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW

Query:  KRPTSAIEVRSFLGLAGYYRRFIEDFS
        +RPTSA EV SFLGLAGYYRRFIEDFS
Subjt:  KRPTSAIEVRSFLGLAGYYRRFIEDFS

TYJ96975.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

5.7e-59

92.91

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Query:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW
        MPF LTNA AVFMDLMNRIFHQYLDQFVI+FIDDILVYSVDRE+HE+HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFL H+VSAKGVSVDPQKVEAVVNW
Subjt:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW

Query:  KRPTSAIEVRSFLGLAGYYRRFIEDFS
        +RPTSA EVRSFLGLAGYYRRFIEDFS
Subjt:  KRPTSAIEVRSFLGLAGYYRRFIEDFS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T306 DNA/RNA polymerases superfamily protein

2.3e-58

91.34

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Query:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW
        MPF LTNA AVFMD MNRIFHQYLDQFVI+FIDDILVYSVDRE+HE+HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFL H+VSAKGV VDPQKVEAVVNW
Subjt:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW

Query:  KRPTSAIEVRSFLGLAGYYRRFIEDFS
        +RPTSA EVRSFLGLAGYYRRFIEDFS
Subjt:  KRPTSAIEVRSFLGLAGYYRRFIEDFS

A0A5A7TA17 Putative gag-pol polyprotein

2.8e-59

92.91

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Query:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW
        MPF LTNA AVFMDLMNRIFHQYLDQFVI+FIDDILVYSVDRE+HE+HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFL H+VSAKGVSVDPQKVEAVVNW
Subjt:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW

Query:  KRPTSAIEVRSFLGLAGYYRRFIEDFS
        +RPTSA EVRSFLGLAGYYRRFIEDFS
Subjt:  KRPTSAIEVRSFLGLAGYYRRFIEDFS

A0A5A7UBV9 Uncharacterized protein

2.3e-58

92.13

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Query:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW
        M F LTNA AVFMDLMNRIFHQYLDQFVI+FIDDILVYSVDRE+HE+HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFL H+VSAKGVSVDPQKVEAVVNW
Subjt:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW

Query:  KRPTSAIEVRSFLGLAGYYRRFIEDFS
        +RPTSA EVRSFLGLAGYYRRFIEDFS
Subjt:  KRPTSAIEVRSFLGLAGYYRRFIEDFS

A0A5D3BEU1 DNA/RNA polymerases superfamily protein

2.8e-59

92.91

Show/hide

Query:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW
        MPF LTNA AVFMDLMNRIFHQYLDQFVI+FIDDILVYSVDRE+HE+HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFL H+VSAKGVSVDPQKVEAVVNW
Subjt:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW

Query:  KRPTSAIEVRSFLGLAGYYRRFIEDFS
        +RPTSA EVRSFLGLAGYYRRFIEDFS
Subjt:  KRPTSAIEVRSFLGLAGYYRRFIEDFS

A0A5D3DZ50 DNA/RNA polymerases superfamily protein

8.8e-58

91.34

Show/hide

Query:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW
        MPF LTNA  VFMDLMNRIFHQYLDQFVI+FIDDILVYSVDRE+HE+HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFL H+VSAKGVSVDPQKVEAVVNW
Subjt:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW

Query:  KRPTSAIEVRSFLGLAGYYRRFIEDFS
        +RPTSA EV SFLGLAGYYRRFIEDFS
Subjt:  KRPTSAIEVRSFLGLAGYYRRFIEDFS

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

3.7e-21

37.8

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Query:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW
        MPF L NA A F   MN I    L++  ++++DDI+V+S   + H + L +V + L    L  +  KCEF  ++  FL H+++  G+  +P+K+EA+  +
Subjt:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW

Query:  KRPTSAIEVRSFLGLAGYYRRFIEDFS
          PT   E+++FLGL GYYR+FI +F+
Subjt:  KRPTSAIEVRSFLGLAGYYRRFIEDFS

P0CT41 Transposon Tf2-12 polyprotein

9.5e-17

35.77

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Query:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW
        MP+ ++ A A F   +N I  +  +  V+ ++DDIL++S     H KH++ VLQ L++  L    +KCEF   QV F+ + +S KG +   + ++ V+ W
Subjt:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW

Query:  KRPTSAIEVRSFLGLAGYYRRFI
        K+P +  E+R FLG   Y R+FI
Subjt:  KRPTSAIEVRSFLGLAGYYRRFI

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

1.0e-18

35.43

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Query:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW
        +PF L NA ++F   ++ +  + + +   +++DD++++S +   H +H+  VL+ L D  +     K  F+ E V +L  IVS  G   DP+KV+A+  +
Subjt:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW

Query:  KRPTSAIEVRSFLGLAGYYRRFIEDFS
          P    +VRSFLGLA YYR FI+DF+
Subjt:  KRPTSAIEVRSFLGLAGYYRRFIEDFS

P20825 Retrovirus-related Pol polyprotein from transposon 297

3.7e-21

39.37

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Query:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW
        MPF L NA A F   MN I    L++  ++++DDI+++S     H   +++V   L D  L  +  KCEF  ++  FL HIV+  G+  +P KV+A+V++
Subjt:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW

Query:  KRPTSAIEVRSFLGLAGYYRRFIEDFS
          PT   E+R+FLGL GYYR+FI +++
Subjt:  KRPTSAIEVRSFLGLAGYYRRFIEDFS

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

1.7e-21

40.16

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Query:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW
        +PF L NA A+F  +++ I  +++ +   ++IDDI+V+S D + H K+LR+VL +L    L     K  F   QV FL +IV+A G+  DP+KV A+   
Subjt:  MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNW

Query:  KRPTSAIEVRSFLGLAGYYRRFIEDFS
          PTS  E++ FLG+  YYR+FI+D++
Subjt:  KRPTSAIEVRSFLGLAGYYRRFIEDFS

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

9.8e-17

48.15

Show/hide

Query:  HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFL--EHIVSAKGVSVDPQKVEAVVNWKRPTSAIEVRSFLGLAGYYRRFIEDF
        HL +VLQ     Q YA   KC F   Q+ +L   HI+S +GVS DP K+EA+V W  P +  E+R FLGL GYYRRF++++
Subjt:  HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFL--EHIVSAKGVSVDPQKVEAVVNWKRPTSAIEVRSFLGLAGYYRRFIEDF

Sequences

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CDS sequence

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ATGCCATTCAGGTTAACGAATGCGCTAGCGGTTTTCATGGATCTCATGAACAGGATCTTCCATCAGTATTTAGATCAGTTTGTGATCCTGTTCATTGATGATATA
TTAGTTTACTCGGTTGATAGAGAAGCCCATGAGAAACATCTGAGGATTGTTCTACAGACTCTACGTGATAAACAATTGTACGCAAAGTTCAGCAAATGTGAGTTT
TGGTTGGAACAAGTAGTATTCTTGGAGCATATAGTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTGGAAGCGGTTGTAAATTGGAAAAGACCAACCAGT
GCGATAGAAGTACGTAGTTTCCTGGGTTTAGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCATGA

mRNA sequence

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Protein sequence

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MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNWKRPTS
AIEVRSFLGLAGYYRRFIEDFS

Cmc08g0222831 (gene) of Melon (Charmono) v1.1 genome