; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0222961 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0222961
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
Genome locationCMiso1.1chr08:12111453..12112154
RNA-Seq ExpressionCmc08g0222961
SyntenyCmc08g0222961
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADJ18449.1 gag/pol protein, partial [Bryonia dioica]1.1e-11186.27Show/hide
Query:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG
        MKDLG+AQY+LGIQIV+NRKN+TLAMSQASYIDK+L RYKMQNSK G LP+++GIHLSKEQC KTPQEV DMR IPY+S VGSLMYAMLCTRPDIC+SVG
Subjt:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG

Query:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEA
        +VSRYQSNPG DHWT VKNILKYLRRT++YMLVYG KDLILT Y DSDFQ DKDARKSTSGSVFTLNG AVVWRS KQ+ IADS MEAEYVAACEAAKEA
Subjt:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEA

Query:  VWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS
        VWLRKFLTDLE+VPNMHLPITLYCDNSGAVANS
Subjt:  VWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-10682.4Show/hide
Query:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG
        MKDLG+AQYVLGIQI+++RKN+TLA+SQA+YIDK+L+RY MQNSK GLLP+++G+HLSKEQ  KTPQEV DMR+IPYAS VGSLMYAMLCTRPDIC++VG
Subjt:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG

Query:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEA
        +VSRYQSNPG DHWT VK +LKYLRRT+DYMLVYG KDLILT Y DSDFQ DKD+RKSTSGSVFTLNG AVVWRS KQ  IADS MEAEYVAACEAAKEA
Subjt:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEA

Query:  VWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS
        VWLRKFL DLE+VPNM+LPITLYCDNSGAVANS
Subjt:  VWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS

KAA0046768.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-10784.55Show/hide
Query:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG
        MK LG+AQYVLGIQIV+N KN+TLAMSQ SYIDK+L RYKMQNSK GLLPY+YGI LSKEQC KTPQEV DM  IPYAS +GSLMYAMLCTRPDIC+SVG
Subjt:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG

Query:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEA
        +VSRYQSNP  DHWT VKNILKY RRTKDYMLVYG+KDLILT Y DSDFQ DKDARKST GSVFTLNG AVVWRS KQS IADS MEA YVAACEA+KEA
Subjt:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEA

Query:  VWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS
        VWL+KFLTDLE+VPNMHLPITLYCDNSGAVANS
Subjt:  VWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS

KAA0052272.1 gag/pol protein [Cucumis melo var. makuwa]5.8e-11085.84Show/hide
Query:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG
        MKDL +AQYVLGI+IV+NRKN+TLAMSQ SYIDK+L RYKMQNSK  LLPY+YGIHLSKEQC KTPQEV DM  IPYAS VGSLMYAMLCTRPDIC+SVG
Subjt:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG

Query:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEA
        +VSRYQSNPG DHWT VKNILKYLRRTKDYMLVYG+KDLILTRY DSDFQ DKD RKSTS SVFTLNGEAVVW+  KQS IADS MEAEYVA+CEAAKEA
Subjt:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEA

Query:  VWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS
        VWL+KFLTDLEIVPN+HLPITLYCDNSGAVANS
Subjt:  VWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-10682.4Show/hide
Query:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG
        MKDLG+AQYVLGIQI+++RKN+TLA+SQA+YIDK+L+RY MQNSK GLLP+++G+HLSKEQ  KTPQEV DMR+IPYAS VGSLMYAMLCTRPDIC++VG
Subjt:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG

Query:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEA
        +VSRYQSNPG DHWT VK +LKYLRRT+DYMLVYG KDLILT Y DSDFQ DKD+RKSTSGSVFTLNG AVVWRS KQ  IADS MEAEYVAACEAAKEA
Subjt:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEA

Query:  VWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS
        VWLRKFL DLE+VPNM+LPITLYCDNSGAVANS
Subjt:  VWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS

TrEMBL top hitse value%identityAlignment
A0A5A7TV73 Gag/pol protein1.7e-10784.55Show/hide
Query:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG
        MK LG+AQYVLGIQIV+N KN+TLAMSQ SYIDK+L RYKMQNSK GLLPY+YGI LSKEQC KTPQEV DM  IPYAS +GSLMYAMLCTRPDIC+SVG
Subjt:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG

Query:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEA
        +VSRYQSNP  DHWT VKNILKY RRTKDYMLVYG+KDLILT Y DSDFQ DKDARKST GSVFTLNG AVVWRS KQS IADS MEA YVAACEA+KEA
Subjt:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEA

Query:  VWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS
        VWL+KFLTDLE+VPNMHLPITLYCDNSGAVANS
Subjt:  VWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS

A0A5A7TZD0 Gag/pol protein5.0e-10782.4Show/hide
Query:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG
        MKDLG+AQYVLGIQI+++RKN+TLA+SQA+YIDK+L+RY MQNSK GLLP+++G+HLSKEQ  KTPQEV DMR+IPYAS VGSLMYAMLCTRPDIC++VG
Subjt:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG

Query:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEA
        +VSRYQSNPG DHWT VK +LKYLRRT+DYMLVYG KDLILT Y DSDFQ DKD+RKSTSGSVFTLNG AVVWRS KQ  IADS MEAEYVAACEAAKEA
Subjt:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEA

Query:  VWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS
        VWLRKFL DLE+VPNM+LPITLYCDNSGAVANS
Subjt:  VWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS

A0A5A7U945 Gag/pol protein2.8e-11085.84Show/hide
Query:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG
        MKDL +AQYVLGI+IV+NRKN+TLAMSQ SYIDK+L RYKMQNSK  LLPY+YGIHLSKEQC KTPQEV DM  IPYAS VGSLMYAMLCTRPDIC+SVG
Subjt:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG

Query:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEA
        +VSRYQSNPG DHWT VKNILKYLRRTKDYMLVYG+KDLILTRY DSDFQ DKD RKSTS SVFTLNGEAVVW+  KQS IADS MEAEYVA+CEAAKEA
Subjt:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEA

Query:  VWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS
        VWL+KFLTDLEIVPN+HLPITLYCDNSGAVANS
Subjt:  VWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS

A0A5A7UYE8 Gag/pol protein5.0e-10782.4Show/hide
Query:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG
        MKDLG+AQYVLGIQI+++RKN+TLA+SQA+YIDK+L+RY MQNSK GLLP+++G+HLSKEQ  KTPQEV DMR+IPYAS VGSLMYAMLCTRPDIC++VG
Subjt:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG

Query:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEA
        +VSRYQSNPG DHWT VK +LKYLRRT+DYMLVYG KDLILT Y DSDFQ DKD+RKSTSGSVFTLNG AVVWRS KQ  IADS MEAEYVAACEAAKEA
Subjt:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEA

Query:  VWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS
        VWLRKFL DLE+VPNM+LPITLYCDNSGAVANS
Subjt:  VWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS

E2GK51 Gag/pol protein (Fragment)5.1e-11286.27Show/hide
Query:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG
        MKDLG+AQY+LGIQIV+NRKN+TLAMSQASYIDK+L RYKMQNSK G LP+++GIHLSKEQC KTPQEV DMR IPY+S VGSLMYAMLCTRPDIC+SVG
Subjt:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG

Query:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEA
        +VSRYQSNPG DHWT VKNILKYLRRT++YMLVYG KDLILT Y DSDFQ DKDARKSTSGSVFTLNG AVVWRS KQ+ IADS MEAEYVAACEAAKEA
Subjt:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEA

Query:  VWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS
        VWLRKFLTDLE+VPNMHLPITLYCDNSGAVANS
Subjt:  VWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS

SwissProt top hitse value%identityAlignment
P04146 Copia protein3.6e-3034.58Show/hide
Query:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQ--NSKNGLLPYKYGIHL--SKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDIC
        M DL + ++ +GI+I    +   + +SQ++Y+ KIL ++ M+  N+ +  LP K    L  S E C             P  S +G LMY MLCTRPD+ 
Subjt:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQ--NSKNGLLPYKYGIHL--SKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDIC

Query:  FSVGMVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLI----LTRYIDSDFQMDKDARKSTSGSVFTL-NGEAVVWRSRKQSFIADSIMEAEYV
         +V ++SRY S    + W  +K +L+YL+ T D  L++  K+L     +  Y+DSD+   +  RKST+G +F + +   + W +++Q+ +A S  EAEY+
Subjt:  FSVGMVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLI----LTRYIDSDFQMDKDARKSTSGSVFTL-NGEAVVWRSRKQSFIADSIMEAEYV

Query:  AACEAAKEAVWLRKFLTDLEIVPNMHLPITLYCDNSGAVA
        A  EA +EA+WL+  LT + I   +  PI +Y DN G ++
Subjt:  AACEAAKEAVWLRKFLTDLEIVPNMHLPITLYCDNSGAVA

P0CV72 Secreted RxLR effector protein 1614.9e-2745.93Show/hide
Query:  MRKIPYASTVGSLMYAMLCTRPDICFSVGMVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVY---GTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNG
        M+ +PY S VG++MY M+ TRPD+  +VG++S++ S+P   HW  +K +L+YL+ T+ Y L +   GT  L+   Y D+D+  D ++R+STSG +F LNG
Subjt:  MRKIPYASTVGSLMYAMLCTRPDICFSVGMVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVY---GTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNG

Query:  EAVVWRSRKQSFIADSIMEAEYVAACEAAKEAVWL
          V WRS+KQ  +A S  E EY+A  EA +EAVWL
Subjt:  EAVVWRSRKQSFIADSIMEAEYVAACEAAKEAVWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.5e-5547.39Show/hide
Query:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG
        MKDLG AQ +LG++IV+ R +R L +SQ  YI+++L R+ M+N+K    P    + LSK+ C  T +E G+M K+PY+S VGSLMYAM+CTRPDI  +VG
Subjt:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG

Query:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEA
        +VSR+  NPG +HW  VK IL+YLR T    L +G  D IL  Y D+D   D D RKS++G +FT +G A+ W+S+ Q  +A S  EAEY+AA E  KE 
Subjt:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEA

Query:  VWLRKFLTDLEIVPNMHLPITLYCDNSGAV
        +WL++FL +L +    ++   +YCD+  A+
Subjt:  VWLRKFLTDLEIVPNMHLPITLYCDNSGAV

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.5e-2032.61Show/hide
Query:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG
        +KD  +  Y LGI+    R    L +SQ  YI  +L R  M  +K    P      LS     K            Y   VGSL Y +  TRPDI ++V 
Subjt:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG

Query:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDY-MLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKE
         +S++   P  +H   +K IL+YL  T ++ + +     L L  Y D+D+  DKD   ST+G +  L    + W S+KQ  +  S  EAEY +    + E
Subjt:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDY-MLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKE

Query:  AVWLRKFLTDLEIVPNMHLPITLYCDNSGA
          W+   LT+L I   +  P  +YCDN GA
Subjt:  AVWLRKFLTDLEIVPNMHLPITLYCDNSGA

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.3e-2332.61Show/hide
Query:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG
        +K+  D  Y LGI+    R  + L +SQ  Y   +L R  M  +K    P      L+     K P          Y   VGSL Y +  TRPD+ ++V 
Subjt:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVG

Query:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDY-MLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKE
         +S+Y   P  DHW  +K +L+YL  T D+ + +     L L  Y D+D+  D D   ST+G +  L    + W S+KQ  +  S  EAEY +    + E
Subjt:  MVSRYQSNPGHDHWTTVKNILKYLRRTKDY-MLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKE

Query:  AVWLRKFLTDLEIVPNMHLPITLYCDNSGA
          W+   LT+L I   +  P  +YCDN GA
Subjt:  AVWLRKFLTDLEIVPNMHLPITLYCDNSGA

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.9e-2130.17Show/hide
Query:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYK-YGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSV
        ++DLG  +Y LG++I   R    + + Q  Y   +L        + GLL  K   + +     F        +    Y   +G LMY  + TR DI F+V
Subjt:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYK-YGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSV

Query:  GMVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTK-DLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAK
          +S++   P   H   V  IL Y++ T    L Y ++ ++ L  + D+ FQ  KD R+ST+G    L    + W+S+KQ  ++ S  EAEY A   A  
Subjt:  GMVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTK-DLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAK

Query:  EAVWLRKFLTDLEIVPNMHLPITLYCDNSGAV
        E +WL +F  +L++   +  P  L+CDN+ A+
Subjt:  EAVWLRKFLTDLEIVPNMHLPITLYCDNSGAV

ATMG00810.1 DNA/RNA polymerases superfamily protein9.8e-1529.76Show/hide
Query:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSK--NGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFS
        MKDLG   Y LGIQI  +     L +SQ  Y ++IL    M + K  +  LP K    +S  + +  P +        + S VG+L Y  L TRPDI ++
Subjt:  MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSK--NGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFS

Query:  VGMVSRYQSNPGHDHWTTVKNILKYLRRTKDY-MLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAA
        V +V +    P    +  +K +L+Y++ T  + + ++    L +  + DSD+      R+ST+G    L    + W +++Q  ++ S  E EY A    A
Subjt:  VGMVSRYQSNPGHDHWTTVKNILKYLRRTKDY-MLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAA

Query:  KEAVW
         E  W
Subjt:  KEAVW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGATTTGGGAGATGCACAATATGTTCTTGGAATCCAAATTGTTCAGAATCGTAAAAATAGAACACTAGCCATGTCTCAAGCATCTTATATTGACAAAATACTTTT
AAGATATAAAATGCAGAATTCCAAAAATGGTTTGTTGCCGTACAAATATGGAATTCATTTGTCAAAGGAACAATGTTTTAAGACACCTCAAGAGGTTGGGGATATGAGAA
AAATTCCCTATGCTTCCACTGTTGGAAGTTTGATGTACGCAATGTTATGTACTAGACCTGACATTTGCTTTTCAGTAGGGATGGTCAGTAGGTATCAGTCCAATCCTGGA
CATGATCACTGGACAACCGTTAAGAATATTCTAAAATATCTTAGGAGAACAAAAGATTACATGCTCGTTTATGGTACTAAGGATCTGATCCTTACCAGATATATTGATTC
TGATTTCCAAATGGATAAAGATGCTAGAAAGTCTACATCAGGATCAGTATTCACTCTAAACGGAGAAGCAGTAGTATGGAGAAGCAGAAAACAGAGTTTTATAGCCGACT
CCATAATGGAAGCTGAATATGTTGCAGCTTGCGAAGCAGCAAAGGAAGCAGTATGGCTAAGAAAATTCTTAACTGATCTGGAAATTGTTCCAAATATGCATCTGCCAATC
ACTTTATACTGTGACAACAGTGGTGCAGTTGCAAATTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGATTTGGGAGATGCACAATATGTTCTTGGAATCCAAATTGTTCAGAATCGTAAAAATAGAACACTAGCCATGTCTCAAGCATCTTATATTGACAAAATACTTTT
AAGATATAAAATGCAGAATTCCAAAAATGGTTTGTTGCCGTACAAATATGGAATTCATTTGTCAAAGGAACAATGTTTTAAGACACCTCAAGAGGTTGGGGATATGAGAA
AAATTCCCTATGCTTCCACTGTTGGAAGTTTGATGTACGCAATGTTATGTACTAGACCTGACATTTGCTTTTCAGTAGGGATGGTCAGTAGGTATCAGTCCAATCCTGGA
CATGATCACTGGACAACCGTTAAGAATATTCTAAAATATCTTAGGAGAACAAAAGATTACATGCTCGTTTATGGTACTAAGGATCTGATCCTTACCAGATATATTGATTC
TGATTTCCAAATGGATAAAGATGCTAGAAAGTCTACATCAGGATCAGTATTCACTCTAAACGGAGAAGCAGTAGTATGGAGAAGCAGAAAACAGAGTTTTATAGCCGACT
CCATAATGGAAGCTGAATATGTTGCAGCTTGCGAAGCAGCAAAGGAAGCAGTATGGCTAAGAAAATTCTTAACTGATCTGGAAATTGTTCCAAATATGCATCTGCCAATC
ACTTTATACTGTGACAACAGTGGTGCAGTTGCAAATTCATGA
Protein sequenceShow/hide protein sequence
MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVGMVSRYQSNPG
HDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEAVWLRKFLTDLEIVPNMHLPI
TLYCDNSGAVANS