; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0223081 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0223081
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr08:12302313..12303101
RNA-Seq ExpressionCmc08g0223081
SyntenyCmc08g0223081
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035204.1 reverse transcriptase [Cucumis melo var. makuwa]3.3e-12288.24Show/hide
Query:  RLNVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVT---SQFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCV
        + NVVADALSRKVAHS ALITKQ PLLRDFERAEIAVSVGEVT   +Q SVQPTLRQ+IIVAQL DPYLVEKRR+VETG GE+FSISSDDGL FEGRLCV
Subjt:  RLNVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVT---SQFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCV

Query:  PEDSAVKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVI
        PEDS VKTELL+EAHSSPFTMH  STKMYQ+LR VYWWRNMKREVADF++RCLVCQQVKAPRQRP GLLQPLSV GWKWESVSMDFITGLPKTLKGYTVI
Subjt:  PEDSAVKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVI

Query:  WVVVDRLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFTLKF
        WVVVDRLTKSA+FVPGKSTYTASK GQLYMTEIVRLHGVPVSI+SDRD RFT KF
Subjt:  WVVVDRLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFTLKF

KAA0040942.1 pol protein [Cucumis melo var. makuwa]3.3e-12288.63Show/hide
Query:  RLNVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVT---SQFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCV
        + NVVADALSRKVAHS ALITKQ PLLRDFERAEIAVSVGEVT   +Q SVQPTLRQ+II AQLNDPYL EKRR+VETG GEDFSISSDDGL FEGRLCV
Subjt:  RLNVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVT---SQFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCV

Query:  PEDSAVKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVI
        PEDSAVKTELLTEAHSSPFTMH  STKMYQ+LR VYWWR MKREVADFV+RCLVCQQVKAPRQ P GLLQPLSV GWKWESVSMDFITGLPKTLKG+TVI
Subjt:  PEDSAVKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVI

Query:  WVVVDRLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFTLKF
        WVVVDRLTKSA+FVPGKSTYTASK GQLYMTEIVRLHGVPVSI+SDRDARFT KF
Subjt:  WVVVDRLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFTLKF

KAA0041490.1 hypothetical protein E6C27_scaffold6G00780 [Cucumis melo var. makuwa]2.7e-12490.98Show/hide
Query:  RLNVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVTS---QFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCV
        + NVVADALSRKVAHS ALITKQAPLLRDFERAEIAVSVGEVTS   Q SVQPTLRQRIIVAQLNDPYLVEKRRLVETG GEDFSIS DDGL FEGRLCV
Subjt:  RLNVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVTS---QFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCV

Query:  PEDSAVKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVI
        PEDSAVKTELLTEAHSSPFTMH  STKMYQ+LR VYWWRNMKREVADFV+RCLVCQQVKAPRQRP GLLQPLSV GWKWESVSMDFITGLPKTLKGYTVI
Subjt:  PEDSAVKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVI

Query:  WVVVDRLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFTLKF
        WVVVDRLTKSA+FV GKSTYTASK GQLYMTEIVRLHGVPVSI+SDRD RFT KF
Subjt:  WVVVDRLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFTLKF

KAA0056636.1 pol protein [Cucumis melo var. makuwa]3.0e-12389.8Show/hide
Query:  RLNVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVT---SQFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCV
        + NVVADALSRKVAHS ALITKQ PLLRDFERAEIAVSVGEVT   +QFSVQPTLRQ+II  QLNDPYL EKRR+VETG GEDFSISSDDGL FEGRLCV
Subjt:  RLNVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVT---SQFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCV

Query:  PEDSAVKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVI
        PEDSAVKTELLTEAHSSPFTMH  STKMYQ+LR VYWWR MKREVADFV+RCLVCQQVKAPRQ PVGLLQPLSV GWKWESVSMDFITGLPKTLKGYTVI
Subjt:  PEDSAVKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVI

Query:  WVVVDRLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFTLKF
        WVVVDRLTKSA+FVPGKSTYTASK GQLYMTEIVRLHGVPVSIVSDRDARFT KF
Subjt:  WVVVDRLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFTLKF

TYK24364.1 putative polyprotein [Cucumis melo var. makuwa]2.7e-12490.98Show/hide
Query:  RLNVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVTS---QFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCV
        + NVVADALSRKVAHS ALITKQAPLLRDFERAEIAVSVGEVTS   Q SVQPTLRQRIIVAQLNDPYLVEKRRLVETG GEDFSIS DDGL FEGRLCV
Subjt:  RLNVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVTS---QFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCV

Query:  PEDSAVKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVI
        PEDSAVKTELLTEAHSSPFTMH  STKMYQ+LR VYWWRNMKREVADFV+RCLVCQQVKAPRQRP GLLQPLSV GWKWESVSMDFITGLPKTLKGYTVI
Subjt:  PEDSAVKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVI

Query:  WVVVDRLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFTLKF
        WVVVDRLTKSA+FV GKSTYTASK GQLYMTEIVRLHGVPVSI+SDRD RFT KF
Subjt:  WVVVDRLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFTLKF

TrEMBL top hitse value%identityAlignment
A0A5A7SVA8 Reverse transcriptase1.6e-12288.24Show/hide
Query:  RLNVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVT---SQFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCV
        + NVVADALSRKVAHS ALITKQ PLLRDFERAEIAVSVGEVT   +Q SVQPTLRQ+IIVAQL DPYLVEKRR+VETG GE+FSISSDDGL FEGRLCV
Subjt:  RLNVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVT---SQFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCV

Query:  PEDSAVKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVI
        PEDS VKTELL+EAHSSPFTMH  STKMYQ+LR VYWWRNMKREVADF++RCLVCQQVKAPRQRP GLLQPLSV GWKWESVSMDFITGLPKTLKGYTVI
Subjt:  PEDSAVKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVI

Query:  WVVVDRLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFTLKF
        WVVVDRLTKSA+FVPGKSTYTASK GQLYMTEIVRLHGVPVSI+SDRD RFT KF
Subjt:  WVVVDRLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFTLKF

A0A5A7TBV4 Pol protein1.6e-12288.63Show/hide
Query:  RLNVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVT---SQFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCV
        + NVVADALSRKVAHS ALITKQ PLLRDFERAEIAVSVGEVT   +Q SVQPTLRQ+II AQLNDPYL EKRR+VETG GEDFSISSDDGL FEGRLCV
Subjt:  RLNVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVT---SQFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCV

Query:  PEDSAVKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVI
        PEDSAVKTELLTEAHSSPFTMH  STKMYQ+LR VYWWR MKREVADFV+RCLVCQQVKAPRQ P GLLQPLSV GWKWESVSMDFITGLPKTLKG+TVI
Subjt:  PEDSAVKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVI

Query:  WVVVDRLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFTLKF
        WVVVDRLTKSA+FVPGKSTYTASK GQLYMTEIVRLHGVPVSI+SDRDARFT KF
Subjt:  WVVVDRLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFTLKF

A0A5A7TDX1 Reverse transcriptase1.3e-12490.98Show/hide
Query:  RLNVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVTS---QFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCV
        + NVVADALSRKVAHS ALITKQAPLLRDFERAEIAVSVGEVTS   Q SVQPTLRQRIIVAQLNDPYLVEKRRLVETG GEDFSIS DDGL FEGRLCV
Subjt:  RLNVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVTS---QFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCV

Query:  PEDSAVKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVI
        PEDSAVKTELLTEAHSSPFTMH  STKMYQ+LR VYWWRNMKREVADFV+RCLVCQQVKAPRQRP GLLQPLSV GWKWESVSMDFITGLPKTLKGYTVI
Subjt:  PEDSAVKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVI

Query:  WVVVDRLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFTLKF
        WVVVDRLTKSA+FV GKSTYTASK GQLYMTEIVRLHGVPVSI+SDRD RFT KF
Subjt:  WVVVDRLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFTLKF

A0A5A7UQP9 Pol protein1.5e-12389.8Show/hide
Query:  RLNVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVT---SQFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCV
        + NVVADALSRKVAHS ALITKQ PLLRDFERAEIAVSVGEVT   +QFSVQPTLRQ+II  QLNDPYL EKRR+VETG GEDFSISSDDGL FEGRLCV
Subjt:  RLNVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVT---SQFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCV

Query:  PEDSAVKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVI
        PEDSAVKTELLTEAHSSPFTMH  STKMYQ+LR VYWWR MKREVADFV+RCLVCQQVKAPRQ PVGLLQPLSV GWKWESVSMDFITGLPKTLKGYTVI
Subjt:  PEDSAVKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVI

Query:  WVVVDRLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFTLKF
        WVVVDRLTKSA+FVPGKSTYTASK GQLYMTEIVRLHGVPVSIVSDRDARFT KF
Subjt:  WVVVDRLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFTLKF

A0A5D3DL91 Reverse transcriptase1.3e-12490.98Show/hide
Query:  RLNVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVTS---QFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCV
        + NVVADALSRKVAHS ALITKQAPLLRDFERAEIAVSVGEVTS   Q SVQPTLRQRIIVAQLNDPYLVEKRRLVETG GEDFSIS DDGL FEGRLCV
Subjt:  RLNVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVTS---QFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCV

Query:  PEDSAVKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVI
        PEDSAVKTELLTEAHSSPFTMH  STKMYQ+LR VYWWRNMKREVADFV+RCLVCQQVKAPRQRP GLLQPLSV GWKWESVSMDFITGLPKTLKGYTVI
Subjt:  PEDSAVKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVI

Query:  WVVVDRLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFTLKF
        WVVVDRLTKSA+FV GKSTYTASK GQLYMTEIVRLHGVPVSI+SDRD RFT KF
Subjt:  WVVVDRLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFTLKF

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.7e-2325.91Show/hide
Query:  NVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVTSQFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCVPEDSA
        N +ADALSR       ++ +  P+ +D E   I        +Q S+    + +++    ND  L+      +  + E+  +     +  + ++ +P D+ 
Subjt:  NVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVTSQFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCVPEDSA

Query:  VKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVIWVVVD
        +   ++ + H     +H     +   +   + W+ +++++ ++V  C  CQ  K+   +P G LQP+  S   WES+SMDFIT LP++  GY  ++VVVD
Subjt:  VKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVIWVVVD

Query:  RLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFT
        R +K A  VP   + TA +  +++   ++   G P  I++D D  FT
Subjt:  RLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFT

P0CT35 Transposon Tf2-2 polyprotein1.7e-2325.91Show/hide
Query:  NVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVTSQFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCVPEDSA
        N +ADALSR       ++ +  P+ +D E   I        +Q S+    + +++    ND  L+      +  + E+  +     +  + ++ +P D+ 
Subjt:  NVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVTSQFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCVPEDSA

Query:  VKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVIWVVVD
        +   ++ + H     +H     +   +   + W+ +++++ ++V  C  CQ  K+   +P G LQP+  S   WES+SMDFIT LP++  GY  ++VVVD
Subjt:  VKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVIWVVVD

Query:  RLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFT
        R +K A  VP   + TA +  +++   ++   G P  I++D D  FT
Subjt:  RLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFT

P0CT36 Transposon Tf2-3 polyprotein1.7e-2325.91Show/hide
Query:  NVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVTSQFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCVPEDSA
        N +ADALSR       ++ +  P+ +D E   I        +Q S+    + +++    ND  L+      +  + E+  +     +  + ++ +P D+ 
Subjt:  NVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVTSQFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCVPEDSA

Query:  VKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVIWVVVD
        +   ++ + H     +H     +   +   + W+ +++++ ++V  C  CQ  K+   +P G LQP+  S   WES+SMDFIT LP++  GY  ++VVVD
Subjt:  VKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVIWVVVD

Query:  RLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFT
        R +K A  VP   + TA +  +++   ++   G P  I++D D  FT
Subjt:  RLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFT

P0CT41 Transposon Tf2-12 polyprotein1.7e-2325.91Show/hide
Query:  NVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVTSQFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCVPEDSA
        N +ADALSR       ++ +  P+ +D E   I        +Q S+    + +++    ND  L+      +  + E+  +     +  + ++ +P D+ 
Subjt:  NVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVTSQFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCVPEDSA

Query:  VKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVIWVVVD
        +   ++ + H     +H     +   +   + W+ +++++ ++V  C  CQ  K+   +P G LQP+  S   WES+SMDFIT LP++  GY  ++VVVD
Subjt:  VKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVIWVVVD

Query:  RLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFT
        R +K A  VP   + TA +  +++   ++   G P  I++D D  FT
Subjt:  RLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFT

Q9UR07 Transposon Tf2-11 polyprotein1.7e-2325.91Show/hide
Query:  NVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVTSQFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCVPEDSA
        N +ADALSR       ++ +  P+ +D E   I        +Q S+    + +++    ND  L+      +  + E+  +     +  + ++ +P D+ 
Subjt:  NVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVTSQFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCVPEDSA

Query:  VKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVIWVVVD
        +   ++ + H     +H     +   +   + W+ +++++ ++V  C  CQ  K+   +P G LQP+  S   WES+SMDFIT LP++  GY  ++VVVD
Subjt:  VKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVIWVVVD

Query:  RLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFT
        R +K A  VP   + TA +  +++   ++   G P  I++D D  FT
Subjt:  RLTKSAYFVPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFT

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGTGAGATTCTGTACCACCCAGGTAAGGCTAAATGTAGTAGCTGATGCGCTGAGTAGGAAGGTTGCACATTCAACAGCACTGATCACCAAGCAAGCCCCCTTACT
TAGAGATTTTGAGAGAGCCGAGATTGCAGTCTCCGTAGGAGAGGTTACCTCACAGTTTTCAGTACAGCCGACCCTGAGACAGAGGATTATTGTTGCTCAGTTAAATGATC
CTTATTTGGTCGAGAAACGTCGTTTGGTAGAGACAGGGCTAGGTGAGGATTTCTCCATATCCTCTGACGATGGCCTTACGTTTGAGGGACGCTTGTGTGTGCCAGAAGAC
AGTGCAGTCAAGACAGAGCTTTTGACTGAGGCTCATAGTTCTCCATTTACTATGCACCTTGAAAGTACAAAGATGTACCAGAACTTAAGGGGTGTCTATTGGTGGAGGAA
CATGAAGAGAGAAGTGGCAGATTTTGTCAATAGGTGTCTGGTATGCCAGCAGGTGAAGGCACCTAGACAGCGACCAGTCGGGTTGTTGCAACCCTTGAGTGTGTCGGGAT
GGAAATGGGAGAGTGTGTCGATGGACTTCATTACAGGACTGCCCAAGACCCTAAAGGGCTATACAGTGATCTGGGTTGTTGTCGACAGACTCACGAAGTCAGCCTACTTT
GTTCCAGGAAAATCCACTTACACTGCCAGTAAGAGGGGACAGCTATATATGACGGAGATAGTGAGACTTCATGGAGTACCTGTATCCATCGTTTCGGACAGAGATGCTCG
TTTCACATTGAAGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGTGAGATTCTGTACCACCCAGGTAAGGCTAAATGTAGTAGCTGATGCGCTGAGTAGGAAGGTTGCACATTCAACAGCACTGATCACCAAGCAAGCCCCCTTACT
TAGAGATTTTGAGAGAGCCGAGATTGCAGTCTCCGTAGGAGAGGTTACCTCACAGTTTTCAGTACAGCCGACCCTGAGACAGAGGATTATTGTTGCTCAGTTAAATGATC
CTTATTTGGTCGAGAAACGTCGTTTGGTAGAGACAGGGCTAGGTGAGGATTTCTCCATATCCTCTGACGATGGCCTTACGTTTGAGGGACGCTTGTGTGTGCCAGAAGAC
AGTGCAGTCAAGACAGAGCTTTTGACTGAGGCTCATAGTTCTCCATTTACTATGCACCTTGAAAGTACAAAGATGTACCAGAACTTAAGGGGTGTCTATTGGTGGAGGAA
CATGAAGAGAGAAGTGGCAGATTTTGTCAATAGGTGTCTGGTATGCCAGCAGGTGAAGGCACCTAGACAGCGACCAGTCGGGTTGTTGCAACCCTTGAGTGTGTCGGGAT
GGAAATGGGAGAGTGTGTCGATGGACTTCATTACAGGACTGCCCAAGACCCTAAAGGGCTATACAGTGATCTGGGTTGTTGTCGACAGACTCACGAAGTCAGCCTACTTT
GTTCCAGGAAAATCCACTTACACTGCCAGTAAGAGGGGACAGCTATATATGACGGAGATAGTGAGACTTCATGGAGTACCTGTATCCATCGTTTCGGACAGAGATGCTCG
TTTCACATTGAAGTTCTGA
Protein sequenceShow/hide protein sequence
MSVRFCTTQVRLNVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGEVTSQFSVQPTLRQRIIVAQLNDPYLVEKRRLVETGLGEDFSISSDDGLTFEGRLCVPED
SAVKTELLTEAHSSPFTMHLESTKMYQNLRGVYWWRNMKREVADFVNRCLVCQQVKAPRQRPVGLLQPLSVSGWKWESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAYF
VPGKSTYTASKRGQLYMTEIVRLHGVPVSIVSDRDARFTLKF