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Cmc08g0223211 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0223211
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationCMiso1.1chr08:12420583..12421302
RNA-Seq ExpressionCmc08g0223211
SyntenyCmc08g0223211
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR025724 - GAG-pre-integrase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067173.1 retrotransposon protein [Cucumis melo var. makuwa]2.2e-5689.39Show/hide
Query:  MNFSYQGRHPPSQLATMAVNSMNSQISGENTNNFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQL
        MNFSYQ RH PSQLA MAVNSMNSQIS ENTNNF LSDS  NVHMTNELANLNLSNNYNGEETVTVGN QPLNIENTGSGKL TPSHTFNL KILHAPQL
Subjt:  MNFSYQGRHPPSQLATMAVNSMNSQISGENTNNFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQL

Query:  ATNLLSVHKFCLDNNCVFIFDIDWFLIQDKVT
        ATNLLSVHKFCLDNNCVF+F  D FLIQDKVT
Subjt:  ATNLLSVHKFCLDNNCVFIFDIDWFLIQDKVT

KAA8524269.1 hypothetical protein F0562_010692 [Nyssa sinensis]4.0e-3738.35Show/hide
Query:  MNFSYQGRHPPSQLATMAVNSMNSQISGENTNNFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQL
        M+FSYQG+ P  QL  M   S       + + N+  +D+    H+T +LANLN    Y G++ +T+ N Q L+I ++G   +    HTF L  +L  P +
Subjt:  MNFSYQGRHPPSQLATMAVNSMNSQISGENTNNFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQL

Query:  ATNLLSVHKFCLDNNCVFIFDIDWFLIQDKVTDRTLYTGESINGLYPIPSTSTLSTST------MHSKSFNFH---------------------AKQEDS
        ATNLLSVH+FC DN+C FIFD + F IQDK T + L+ G S +GLYP+P++S    S       +H + +N H                      KQ  +
Subjt:  ATNLLSVHKFCLDNNCVFIFDIDWFLIQDKVTDRTLYTGESINGLYPIPSTSTLSTST------MHSKSFNFH---------------------AKQEDS

Query:  SLWHFRFGHHAPKILSSILSRIGLSMSSSISTCNCISCLKAKMTKLPFPMSLSTSLTPPELVHNDV
         LWH R GH +   L SILS   ++     S   C  CL  KMTKLPFP+S + S  P +LVH+D+
Subjt:  SLWHFRFGHHAPKILSSILSRIGLSMSSSISTCNCISCLKAKMTKLPFPMSLSTSLTPPELVHNDV

KAF8407394.1 hypothetical protein HHK36_006525 [Tetracentron sinense]3.1e-3439.75Show/hide
Query:  MNFSYQGRHPPSQLATMAVNSMNSQISGENTNNFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQL
        ++ SYQGR PP +L  M        ++ +  ++   +D+R   H+T +L+NL+L + Y+G ++V + N + L I + G+ KL   ++ F+L  ILH P +
Subjt:  MNFSYQGRHPPSQLATMAVNSMNSQISGENTNNFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQL

Query:  ATNLLSVHKFCLDNNCVFIFDIDWFLIQDKVTDRTLYTGESINGLYPIPSTSTLSTSTMHSKSFNFHAKQEDSSLWHFRFGHHAPKILSSILSRIGLSMS
         TNL+SV +F  DNNC FIF    F ++D  T RTL+ G   +G+YPI     L  S  HS S  F+  +  SS+WH R GH AP I++S+   + LS S
Subjt:  ATNLLSVHKFCLDNNCVFIFDIDWFLIQDKVTDRTLYTGESINGLYPIPSTSTLSTSTMHSKSFNFHAKQEDSSLWHFRFGHHAPKILSSILSRIGLSMS

Query:  SSISTCNCISCLKAKMTKLPFPMSLSTSLTPPELVHNDV
        S +S+  C SC   K ++LPF MS S +  P ELVH DV
Subjt:  SSISTCNCISCLKAKMTKLPFPMSLSTSLTPPELVHNDV

XP_016902697.1 PREDICTED: uncharacterized protein LOC107991825 [Cucumis melo]3.7e-5992.13Show/hide
Query:  MNFSYQGRHPPSQLATMAVNSMNSQISGENTNNFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQL
        MNFSYQG+HPPSQL  MA+NSMNSQI GENTNNFLLSDS CNVHMTNELANLNLSNNYNGEETVTVGN QP+NIENTGSGKLLTPSHTFNL KILHAPQL
Subjt:  MNFSYQGRHPPSQLATMAVNSMNSQISGENTNNFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQL

Query:  ATNLLSVHKFCLDNNCVFIFDIDWFLI
        ATNLLSVHKFCLDNNCVFIFD DWFLI
Subjt:  ATNLLSVHKFCLDNNCVFIFDIDWFLI

XP_022158189.1 uncharacterized protein LOC111024722 [Momordica charantia]5.1e-6963.11Show/hide
Query:  MAVNSMNSQISGENTNNFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQLATNLLSVHKFCLDNNC
        MAVN+M    S    NNF LSDS CN H+TN+L NLNL ++YNGEE VTVGN Q LNI +TGSG L   SH F +  +LHAP LATNLLSVHKFCLDN+C
Subjt:  MAVNSMNSQISGENTNNFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQLATNLLSVHKFCLDNNC

Query:  VFIFDIDWFLIQDKVTDRTLYTGESINGLYPIPSTSTLST--STMHSKSFNFHAKQEDSSLWHFRFGHHAPKILSSILSRIGLSMSSSISTCNCISCLKA
        +F++D DWFLIQDKVTD TLY G+S+NGLYPIPS+STLS+  + +H K+    AK   S LWH R GHH+PKIL   LS  GLS+S S +TC C SCLKA
Subjt:  VFIFDIDWFLIQDKVTDRTLYTGESINGLYPIPSTSTLST--STMHSKSFNFHAKQEDSSLWHFRFGHHAPKILSSILSRIGLSMSSSISTCNCISCLKA

Query:  KMTKLPFPMSLSTSLTPPELVHNDV
        KM+KL FPMS S+S  P E VH+DV
Subjt:  KMTKLPFPMSLSTSLTPPELVHNDV

TrEMBL top hitse value%identityAlignment
A0A1S4E394 uncharacterized protein LOC1079918251.8e-5992.13Show/hide
Query:  MNFSYQGRHPPSQLATMAVNSMNSQISGENTNNFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQL
        MNFSYQG+HPPSQL  MA+NSMNSQI GENTNNFLLSDS CNVHMTNELANLNLSNNYNGEETVTVGN QP+NIENTGSGKLLTPSHTFNL KILHAPQL
Subjt:  MNFSYQGRHPPSQLATMAVNSMNSQISGENTNNFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQL

Query:  ATNLLSVHKFCLDNNCVFIFDIDWFLI
        ATNLLSVHKFCLDNNCVFIFD DWFLI
Subjt:  ATNLLSVHKFCLDNNCVFIFDIDWFLI

A0A2N9GWG5 Uncharacterized protein9.2e-4042.92Show/hide
Query:  MNFSYQGRHPPSQLATMAVNSMNSQISGENTN-NFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQ
        MNF+YQGR PP++LA +A  +M+S I+   +N +  +SD+    H T +++++   ++Y G + VTVGN Q L I +TG+ +L   SH F L KILH P 
Subjt:  MNFSYQGRHPPSQLATMAVNSMNSQISGENTN-NFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQ

Query:  LATNLLSVHKFCLDNNCVFIFDIDWFLIQDKVTDRTLYTGESINGLYPIPSTSTLSTSTMHSKSFNFHAKQEDSSLWHFRFGHHAPKILSSILSRIGLSM
        +++NLLSVH+FC DNN  F FD   F I+D  + R LY G S +GLYPI      ++S    K F+  A    S LWH R GH    ++  +L    L +
Subjt:  LATNLLSVHKFCLDNNCVFIFDIDWFLIQDKVTDRTLYTGESINGLYPIPSTSTLSTSTMHSKSFNFHAKQEDSSLWHFRFGHHAPKILSSILSRIGLSM

Query:  SSSISTCNCISCLKAKMTKLPFPMSLSTSLTPPELVHNDV
          S +T  CI CL+ KM KLPFP S+S +  P E+VH+DV
Subjt:  SSSISTCNCISCLKAKMTKLPFPMSLSTSLTPPELVHNDV

A0A2N9HKM9 Uncharacterized protein9.2e-4042.92Show/hide
Query:  MNFSYQGRHPPSQLATMAVNSMNSQISGENTN-NFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQ
        MNF+YQGR PP++LA +A  +M+S I+   +N +  +SD+    H T +++++   ++Y G + VTVGN Q L I +TG+ +L   SH F L KILH P 
Subjt:  MNFSYQGRHPPSQLATMAVNSMNSQISGENTN-NFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQ

Query:  LATNLLSVHKFCLDNNCVFIFDIDWFLIQDKVTDRTLYTGESINGLYPIPSTSTLSTSTMHSKSFNFHAKQEDSSLWHFRFGHHAPKILSSILSRIGLSM
        +++NLLSVH+FC DNN  F FD   F I+D  + R LY G S +GLYPI      ++S    K F+  A    S LWH R GH    ++  +L    L +
Subjt:  LATNLLSVHKFCLDNNCVFIFDIDWFLIQDKVTDRTLYTGESINGLYPIPSTSTLSTSTMHSKSFNFHAKQEDSSLWHFRFGHHAPKILSSILSRIGLSM

Query:  SSSISTCNCISCLKAKMTKLPFPMSLSTSLTPPELVHNDV
          S +T  CI CL+ KM KLPFP S+S +  P E+VH+DV
Subjt:  SSSISTCNCISCLKAKMTKLPFPMSLSTSLTPPELVHNDV

A0A5A7VGG0 Retrotransposon protein1.1e-5689.39Show/hide
Query:  MNFSYQGRHPPSQLATMAVNSMNSQISGENTNNFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQL
        MNFSYQ RH PSQLA MAVNSMNSQIS ENTNNF LSDS  NVHMTNELANLNLSNNYNGEETVTVGN QPLNIENTGSGKL TPSHTFNL KILHAPQL
Subjt:  MNFSYQGRHPPSQLATMAVNSMNSQISGENTNNFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQL

Query:  ATNLLSVHKFCLDNNCVFIFDIDWFLIQDKVT
        ATNLLSVHKFCLDNNCVF+F  D FLIQDKVT
Subjt:  ATNLLSVHKFCLDNNCVFIFDIDWFLIQDKVT

A0A6J1DYN6 uncharacterized protein LOC1110247222.5e-6963.11Show/hide
Query:  MAVNSMNSQISGENTNNFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQLATNLLSVHKFCLDNNC
        MAVN+M    S    NNF LSDS CN H+TN+L NLNL ++YNGEE VTVGN Q LNI +TGSG L   SH F +  +LHAP LATNLLSVHKFCLDN+C
Subjt:  MAVNSMNSQISGENTNNFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQLATNLLSVHKFCLDNNC

Query:  VFIFDIDWFLIQDKVTDRTLYTGESINGLYPIPSTSTLST--STMHSKSFNFHAKQEDSSLWHFRFGHHAPKILSSILSRIGLSMSSSISTCNCISCLKA
        +F++D DWFLIQDKVTD TLY G+S+NGLYPIPS+STLS+  + +H K+    AK   S LWH R GHH+PKIL   LS  GLS+S S +TC C SCLKA
Subjt:  VFIFDIDWFLIQDKVTDRTLYTGESINGLYPIPSTSTLST--STMHSKSFNFHAKQEDSSLWHFRFGHHAPKILSSILSRIGLSMSSSISTCNCISCLKA

Query:  KMTKLPFPMSLSTSLTPPELVHNDV
        KM+KL FPMS S+S  P E VH+DV
Subjt:  KMTKLPFPMSLSTSLTPPELVHNDV

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE13.2e-2133.33Show/hide
Query:  SYQGRHPPSQLATMAVNSMNSQISGENTNNFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQLATN
        S   + PPS        +  +  S  ++NN+LL DS    H+T++  NL+L   Y G + V V +   + I +TGS  L T S   NL  IL+ P +  N
Subjt:  SYQGRHPPSQLATMAVNSMNSQISGENTNNFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQLATN

Query:  LLSVHKFCLDNNCVFIFDIDWFLIQDKVTDRTLYTGESINGLYPIPSTSTLSTSTMHSKSFNFHAKQEDSSLWHFRFGHHAPKILSSILSRIGLS-MSSS
        L+SV++ C  N     F    F ++D  T   L  G++ + LY  P  S+   S   S S      +   S WH R GH AP IL+S++S   LS ++ S
Subjt:  LLSVHKFCLDNNCVFIFDIDWFLIQDKVTDRTLYTGESINGLYPIPSTSTLSTSTMHSKSFNFHAKQEDSSLWHFRFGHHAPKILSSILSRIGLS-MSSS

Query:  ISTCNCISCLKAKMTKLPFPMSLSTSLTPPELVHNDV
            +C  CL  K  K+PF  S   S  P E +++DV
Subjt:  ISTCNCISCLKAKMTKLPFPMSLSTSLTPPELVHNDV

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE25.6e-1832.3Show/hide
Query:  ATMAVNSMNSQISGENTNNFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQLATNLLSVHKFCLDN
        A +AVN      S  N NN+LL DS    H+T++  NL+    Y G + V + +   + I +TGS  L T S + +L K+L+ P +  NL+SV++ C  N
Subjt:  ATMAVNSMNSQISGENTNNFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQLATNLLSVHKFCLDN

Query:  NCVFIFDIDWFLIQDKVTDRTLYTGESINGLYPIPSTSTLSTSTMHSKSFNFHAKQEDSSLWHFRFGHHAPKILSSILSRIGLS-MSSSISTCNCISCLK
             F    F ++D  T   L  G++ + LY  P  S+ + S   S        +   S WH R GH +  IL+S++S   L  ++ S    +C  C  
Subjt:  NCVFIFDIDWFLIQDKVTDRTLYTGESINGLYPIPSTSTLSTSTMHSKSFNFHAKQEDSSLWHFRFGHHAPKILSSILSRIGLS-MSSSISTCNCISCLK

Query:  AKMTKLPFPMSLSTSLTPPELVHNDV
         K  K+PF  S  TS  P E +++DV
Subjt:  AKMTKLPFPMSLSTSLTPPELVHNDV

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTTCTCATATCAAGGCCGACATCCACCCTCCCAATTAGCGACAATGGCGGTAAACTCTATGAATTCTCAAATCTCTGGTGAAAATACTAACAATTTTTTGTTATC
TGACAGTAGATGCAACGTTCACATGACAAATGAGTTAGCAAATCTCAATCTATCCAATAATTATAATGGTGAGGAAACTGTCACAGTGGGAAATAGTCAACCTTTAAATA
TTGAAAATACCGGCAGTGGTAAACTCTTAACTCCCTCTCATACCTTTAATCTTTTCAAAATACTCCATGCTCCTCAACTTGCTACAAATCTATTATCTGTTCACAAATTT
TGTCTTGACAATAACTGCGTCTTTATTTTTGATATTGACTGGTTCCTCATTCAGGATAAAGTCACTGACCGAACTCTCTATACCGGTGAAAGCATCAATGGTCTCTATCC
TATTCCCAGTACTTCTACTCTATCCACATCCACCATGCATTCCAAATCTTTTAATTTTCATGCAAAACAGGAAGATTCATCATTATGGCATTTTCGTTTTGGTCATCATG
CTCCTAAAATTCTTAGTTCTATTTTATCTCGCATTGGTCTGTCTATGTCTTCTTCTATTTCTACTTGCAATTGCATAAGTTGTTTAAAAGCAAAAATGACAAAATTACCT
TTTCCTATGTCTTTATCAACTTCTCTTACACCACCTGAACTTGTTCACAACGATGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAATTTCTCATATCAAGGCCGACATCCACCCTCCCAATTAGCGACAATGGCGGTAAACTCTATGAATTCTCAAATCTCTGGTGAAAATACTAACAATTTTTTGTTATC
TGACAGTAGATGCAACGTTCACATGACAAATGAGTTAGCAAATCTCAATCTATCCAATAATTATAATGGTGAGGAAACTGTCACAGTGGGAAATAGTCAACCTTTAAATA
TTGAAAATACCGGCAGTGGTAAACTCTTAACTCCCTCTCATACCTTTAATCTTTTCAAAATACTCCATGCTCCTCAACTTGCTACAAATCTATTATCTGTTCACAAATTT
TGTCTTGACAATAACTGCGTCTTTATTTTTGATATTGACTGGTTCCTCATTCAGGATAAAGTCACTGACCGAACTCTCTATACCGGTGAAAGCATCAATGGTCTCTATCC
TATTCCCAGTACTTCTACTCTATCCACATCCACCATGCATTCCAAATCTTTTAATTTTCATGCAAAACAGGAAGATTCATCATTATGGCATTTTCGTTTTGGTCATCATG
CTCCTAAAATTCTTAGTTCTATTTTATCTCGCATTGGTCTGTCTATGTCTTCTTCTATTTCTACTTGCAATTGCATAAGTTGTTTAAAAGCAAAAATGACAAAATTACCT
TTTCCTATGTCTTTATCAACTTCTCTTACACCACCTGAACTTGTTCACAACGATGTATGA
Protein sequenceShow/hide protein sequence
MNFSYQGRHPPSQLATMAVNSMNSQISGENTNNFLLSDSRCNVHMTNELANLNLSNNYNGEETVTVGNSQPLNIENTGSGKLLTPSHTFNLFKILHAPQLATNLLSVHKF
CLDNNCVFIFDIDWFLIQDKVTDRTLYTGESINGLYPIPSTSTLSTSTMHSKSFNFHAKQEDSSLWHFRFGHHAPKILSSILSRIGLSMSSSISTCNCISCLKAKMTKLP
FPMSLSTSLTPPELVHNDV