; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0223421 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0223421
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr08:12908758..12909531
RNA-Seq ExpressionCmc08g0223421
SyntenyCmc08g0223421
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025815.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.2e-12492.92Show/hide
Query:  MMNYRLLNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNG
        MMNYRLLNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNG
Subjt:  MMNYRLLNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNG

Query:  TLFEEVYMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHF
        TLFEEVYMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHF
Subjt:  TLFEEVYMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHF

Query:  EMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRI
        EMKDLGSLNYFLGLEVSRRSDG+   +++ + +L+ +  +
Subjt:  EMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRI

KAA0037745.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.7e-12188.4Show/hide
Query:  LNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEEV
        L +   WDYVDLP GKR I CKWIYKIKTHSD TIERYK RLVAKGYSQEYGIDYEE +APVARMTSVRSLLA  AAKQWPLLQMDVKN FLNGTL EEV
Subjt:  LNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEEV

Query:  YMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMKDLG
        YMKPP  TS PPHKVCLLRRALYGLKQA +AWFATFSSTITQLGFTSSPHDTALFTRHT QGIVLLLLYVDDMIITGNDP A SDLQHYLGQHFEMKDLG
Subjt:  YMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMKDLG

Query:  SLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVHL
        SLNYFLGLEVSRRSDGYLLSQAKYAS+LL  S ITDSNTASTPL PNVHL
Subjt:  SLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVHL

KAA0041601.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.7e-12188.4Show/hide
Query:  LNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEEV
        L +   WDYVDLP GKR I CKWIYKIKTHSD TIERYK RLVAKGYSQEYGIDYEE +APVARMTSVRSLLA  AAKQWPLLQMDVKN FLNGTL EEV
Subjt:  LNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEEV

Query:  YMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMKDLG
        YMKPP  TS PPHKVCLLRRALYGLKQA +AWFATFSSTITQLGFTSSPHDTALFTRHT QGIVLLLLYVDDMIITGNDP A SDLQHYLGQHFEMKDLG
Subjt:  YMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMKDLG

Query:  SLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVHL
        SLNYFLGLEVSRRSDGYLLSQAKYAS+LL  S ITDSNTASTPL PNVHL
Subjt:  SLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVHL

TYK19656.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.7e-12188.4Show/hide
Query:  LNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEEV
        L +   WDYVDLP GKR I CKWIYKIKTHSD TIERYK RLVAKGYSQEYGIDYEE +APVARMTSVRSLLA  AAKQWPLLQMDVKN FLNGTL EEV
Subjt:  LNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEEV

Query:  YMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMKDLG
        YMKPP  TS PPHKVCLLRRALYGLKQA +AWFATFSSTITQLGFTSSPHDTALFTRHT QGIVLLLLYVDDMIITGNDP A SDLQHYLGQHFEMKDLG
Subjt:  YMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMKDLG

Query:  SLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVHL
        SLNYFLGLEVSRRSDGYLLSQAKYAS+LL  S ITDSNTASTPL PNVHL
Subjt:  SLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVHL

TYK21532.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.6e-12188.4Show/hide
Query:  LNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEEV
        L +   WDYVDLP GKR I CKWIYKIKTHSD TIERYK RLVAKGYSQE+GIDYEE +APVARMTSVRSLLA  AAKQWPLLQMDVKN FLNGTL EEV
Subjt:  LNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEEV

Query:  YMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMKDLG
        YMKPP  TS PPHKVCLLRRALYGLKQA +AWFATFSSTITQLGFTSSPHDTALFTRHT QGIVLLLLYVDDMIITGNDPQA SDLQHYLGQHFEMKDLG
Subjt:  YMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMKDLG

Query:  SLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVHL
        SLNYFLGLEVSRRSDGYLLSQAKYAS+LL  S ITDSNTASTPL PNVHL
Subjt:  SLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVHL

TrEMBL top hitse value%identityAlignment
A0A5A7SMY1 Putative mitochondrial protein5.8e-12592.92Show/hide
Query:  MMNYRLLNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNG
        MMNYRLLNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNG
Subjt:  MMNYRLLNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNG

Query:  TLFEEVYMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHF
        TLFEEVYMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHF
Subjt:  TLFEEVYMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHF

Query:  EMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRI
        EMKDLGSLNYFLGLEVSRRSDG+   +++ + +L+ +  +
Subjt:  EMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRI

A0A5A7T8F2 Retrovirus-related Pol polyprotein from transposon TNT 1-942.3e-12188.4Show/hide
Query:  LNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEEV
        L +   WDYVDLP GKR I CKWIYKIKTHSD TIERYK RLVAKGYSQEYGIDYEE +APVARMTSVRSLLA  AAKQWPLLQMDVKN FLNGTL EEV
Subjt:  LNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEEV

Query:  YMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMKDLG
        YMKPP  TS PPHKVCLLRRALYGLKQA +AWFATFSSTITQLGFTSSPHDTALFTRHT QGIVLLLLYVDDMIITGNDP A SDLQHYLGQHFEMKDLG
Subjt:  YMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMKDLG

Query:  SLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVHL
        SLNYFLGLEVSRRSDGYLLSQAKYAS+LL  S ITDSNTASTPL PNVHL
Subjt:  SLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVHL

A0A5A7VIT8 Retrovirus-related Pol polyprotein from transposon TNT 1-942.3e-12188.4Show/hide
Query:  LNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEEV
        L +   WDYVDLP GKR I CKWIYKIKTHSD TIERYK RLVAKGYSQEYGIDYEE +APVARMTSVRSLLA  AAKQWPLLQMDVKN FLNGTL EEV
Subjt:  LNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEEV

Query:  YMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMKDLG
        YMKPP  TS PPHKVCLLRRALYGLKQA +AWFATFSSTITQLGFTSSPHDTALFTRHT QGIVLLLLYVDDMIITGNDP A SDLQHYLGQHFEMKDLG
Subjt:  YMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMKDLG

Query:  SLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVHL
        SLNYFLGLEVSRRSDGYLLSQAKYAS+LL  S ITDSNTASTPL PNVHL
Subjt:  SLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVHL

A0A5D3D7V8 Retrovirus-related Pol polyprotein from transposon TNT 1-942.3e-12188.4Show/hide
Query:  LNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEEV
        L +   WDYVDLP GKR I CKWIYKIKTHSD TIERYK RLVAKGYSQEYGIDYEE +APVARMTSVRSLLA  AAKQWPLLQMDVKN FLNGTL EEV
Subjt:  LNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEEV

Query:  YMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMKDLG
        YMKPP  TS PPHKVCLLRRALYGLKQA +AWFATFSSTITQLGFTSSPHDTALFTRHT QGIVLLLLYVDDMIITGNDP A SDLQHYLGQHFEMKDLG
Subjt:  YMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMKDLG

Query:  SLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVHL
        SLNYFLGLEVSRRSDGYLLSQAKYAS+LL  S ITDSNTASTPL PNVHL
Subjt:  SLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVHL

A0A5D3DD70 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-12188.4Show/hide
Query:  LNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEEV
        L +   WDYVDLP GKR I CKWIYKIKTHSD TIERYK RLVAKGYSQE+GIDYEE +APVARMTSVRSLLA  AAKQWPLLQMDVKN FLNGTL EEV
Subjt:  LNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEEV

Query:  YMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMKDLG
        YMKPP  TS PPHKVCLLRRALYGLKQA +AWFATFSSTITQLGFTSSPHDTALFTRHT QGIVLLLLYVDDMIITGNDPQA SDLQHYLGQHFEMKDLG
Subjt:  YMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMKDLG

Query:  SLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVHL
        SLNYFLGLEVSRRSDGYLLSQAKYAS+LL  S ITDSNTASTPL PNVHL
Subjt:  SLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVHL

SwissProt top hitse value%identityAlignment
P04146 Copia protein9.8e-4536.22Show/hide
Query:  LNRHTL---WDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLF
        LN H +   W     P  K ++  +W++ +K +      RYK RLVA+G++Q+Y IDYEE +APVAR++S R +L+ V      + QMDVK  FLNGTL 
Subjt:  LNRHTL---WDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLF

Query:  EEVYMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALF--TRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFE
        EE+YM+ P   S     VC L +A+YGLKQA + WF  F   + +  F +S  D  ++   +      + +LLYVDD++I   D    ++ + YL + F 
Subjt:  EEVYMKPPSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALF--TRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFE

Query:  MKDLGSLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVH
        M DL  + +F+G+ +  + D   LSQ+ Y   +L    + + N  STPL   ++
Subjt:  MKDLGSLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVH

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.0e-4638.82Show/hide
Query:  LNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEEV
        L ++  +  V+LP GKR + CKW++K+K   D  + RYK RLV KG+ Q+ GID++EI++PV +MTS+R++L+  A+    + Q+DVK  FL+G L EE+
Subjt:  LNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEEV

Query:  YMKPPS--STSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTAL-FTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMK
        YM+ P     +   H VC L ++LYGLKQA + W+  F S +    +  +  D  + F R +    ++LLLYVDDM+I G D    + L+  L + F+MK
Subjt:  YMKPPS--STSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTAL-FTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMK

Query:  DLGSLNYFLGLEV--SRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVHL
        DLG     LG+++   R S    LSQ KY   +L    + ++   STPL+ ++ L
Subjt:  DLGSLNYFLGLEV--SRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVHL

P25600 Putative transposon Ty5-1 protein YCL074W5.1e-1732.52Show/hide
Query:  MDVKNTFLNGTLFEEVYMKPPSS--TSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQA
        MDV   FLN T+ E +Y+K P        P  V  L   +YGLKQA   W    ++T+ ++GF     +  L+ R T+ G + + +YVDD+++    P+ 
Subjt:  MDVKNTFLNGTLFEEVYMKPPSS--TSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQA

Query:  TSDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYL-LSQAKYASNLLVHSRITDSNTASTPL
           ++  L + + MKDLG ++ FLGL + + S+G + LS   Y +     S I       TPL
Subjt:  TSDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYL-LSQAKYASNLLVHSRITDSNTASTPL

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE14.4e-5341.9Show/hide
Query:  LNRHTLWDYVDLPHGK-RLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEE
        +  HT WD V  P     ++ C+WI+  K +SD ++ RYK RLVAKGY+Q  G+DY E ++PV + TS+R +L     + WP+ Q+DV N FL GTL ++
Subjt:  LNRHTLWDYVDLPHGK-RLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEE

Query:  VYMKPPSS--TSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMK
        VYM  P        P+ VC LR+ALYGLKQA +AW+    + +  +GF +S  DT+LF     + IV +L+YVDD++ITGNDP    +    L Q F +K
Subjt:  VYMKPPSS--TSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMK

Query:  DLGSLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVHL
        D   L+YFLG+E  R   G  LSQ +Y  +LL  + +  +   +TP++P+  L
Subjt:  DLGSLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVHL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.5e-5040.32Show/hide
Query:  LNRHTLWDYV-DLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEE
        +  HT WD V   P    ++ C+WI+  K +SD ++ RYK RLVAKGY+Q  G+DY E ++PV + TS+R +L     + WP+ Q+DV N FL GTL +E
Subjt:  LNRHTLWDYV-DLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEE

Query:  VYMKPPSS--TSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMK
        VYM  P        P  VC LR+A+YGLKQA +AW+    + +  +GF +S  DT+LF     + I+ +L+YVDD++ITGND          L Q F +K
Subjt:  VYMKPPSS--TSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMK

Query:  DLGSLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVHL
        +   L+YFLG+E  R   G  LSQ +Y  +LL  + +  +   +TP++ +  L
Subjt:  DLGSLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVHL

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.4e-5745.42Show/hide
Query:  HTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEEVYMK
        HT W+   LP  K+ I CKW+YKIK +SD TIERYK RLVAKGY+Q+ GID+ E ++PV ++TSV+ +LA  A   + L Q+D+ N FLNG L EE+YMK
Subjt:  HTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEEVYMK

Query:  PP------SSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMK
         P         S PP+ VC L++++YGLKQA + WF  FS T+   GF  S  D   F + T    + +L+YVDD+II  N+  A  +L+  L   F+++
Subjt:  PP------SSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMK

Query:  DLGSLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNV
        DLG L YFLGLE++R + G  + Q KYA +LL  + +     +S P+ P+V
Subjt:  DLGSLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPLSPNV

ATMG00810.1 DNA/RNA polymerases superfamily protein8.6e-1243.04Show/hide
Query:  LLLYVDDMIITGNDPQATSDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPL
        LLLYVDD+++TG+     + L   L   F MKDLG ++YFLG+++     G  LSQ KYA  +L ++ + D    STPL
Subjt:  LLLYVDDMIITGNDPQATSDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASNLLVHSRITDSNTASTPL

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)1.4e-1445.83Show/hide
Query:  LNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLL
        L+R+  W  V  P  + ++ CKW++K K HSD T++R K RLVAKG+ QE GI + E Y+PV R  ++R++L
Subjt:  LNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAATTACAGGCTCTTGAACAGACACACACTTTGGGACTATGTTGACTTACCTCATGGTAAAAGACTTATTAGCTGCAAGTGGATCTACAAAATCAAGACTCACTC
TGATAGTACTATTGAGCGTTATAAAGTTCGTCTTGTTGCAAAAGGATATTCCCAAGAATATGGTATTGACTATGAAGAAATATATGCTCCTGTGGCTCGGATGACGTCTG
TTCGAAGTTTGTTAGCTACTGTTGCTGCCAAGCAATGGCCTCTTCTTCAGATGGATGTAAAAAATACTTTCCTTAATGGGACTCTTTTTGAAGAAGTCTATATGAAGCCA
CCTTCTAGTACTTCTCCTCCTCCTCACAAGGTGTGCCTCCTTCGTCGAGCATTATATGGTCTGAAACAGGCTCTACAGGCTTGGTTTGCCACATTTAGCTCTACCATCAC
TCAACTTGGATTTACTTCTAGCCCTCATGACACTGCGCTCTTTACTCGCCATACAACCCAGGGTATTGTTCTTCTTCTTCTCTATGTTGATGACATGATTATTACTGGTA
ATGATCCACAGGCCACATCCGATCTCCAACATTATCTTGGTCAACATTTTGAGATGAAAGACCTTGGGTCTCTCAACTACTTTCTTGGCCTTGAAGTCTCTCGGCGCTCA
GACGGGTATTTATTATCTCAAGCCAAATATGCCTCAAATCTTTTAGTTCACTCAAGAATCACTGACTCCAACACAGCTTCGACACCTTTAAGTCCCAATGTTCATTTGAT
TTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGAATTACAGGCTCTTGAACAGACACACACTTTGGGACTATGTTGACTTACCTCATGGTAAAAGACTTATTAGCTGCAAGTGGATCTACAAAATCAAGACTCACTC
TGATAGTACTATTGAGCGTTATAAAGTTCGTCTTGTTGCAAAAGGATATTCCCAAGAATATGGTATTGACTATGAAGAAATATATGCTCCTGTGGCTCGGATGACGTCTG
TTCGAAGTTTGTTAGCTACTGTTGCTGCCAAGCAATGGCCTCTTCTTCAGATGGATGTAAAAAATACTTTCCTTAATGGGACTCTTTTTGAAGAAGTCTATATGAAGCCA
CCTTCTAGTACTTCTCCTCCTCCTCACAAGGTGTGCCTCCTTCGTCGAGCATTATATGGTCTGAAACAGGCTCTACAGGCTTGGTTTGCCACATTTAGCTCTACCATCAC
TCAACTTGGATTTACTTCTAGCCCTCATGACACTGCGCTCTTTACTCGCCATACAACCCAGGGTATTGTTCTTCTTCTTCTCTATGTTGATGACATGATTATTACTGGTA
ATGATCCACAGGCCACATCCGATCTCCAACATTATCTTGGTCAACATTTTGAGATGAAAGACCTTGGGTCTCTCAACTACTTTCTTGGCCTTGAAGTCTCTCGGCGCTCA
GACGGGTATTTATTATCTCAAGCCAAATATGCCTCAAATCTTTTAGTTCACTCAAGAATCACTGACTCCAACACAGCTTCGACACCTTTAAGTCCCAATGTTCATTTGAT
TTGA
Protein sequenceShow/hide protein sequence
MMNYRLLNRHTLWDYVDLPHGKRLISCKWIYKIKTHSDSTIERYKVRLVAKGYSQEYGIDYEEIYAPVARMTSVRSLLATVAAKQWPLLQMDVKNTFLNGTLFEEVYMKP
PSSTSPPPHKVCLLRRALYGLKQALQAWFATFSSTITQLGFTSSPHDTALFTRHTTQGIVLLLLYVDDMIITGNDPQATSDLQHYLGQHFEMKDLGSLNYFLGLEVSRRS
DGYLLSQAKYASNLLVHSRITDSNTASTPLSPNVHLI