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Cmc08g0223521 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0223521
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
Genome locationCMiso1.1chr08:13055385..13055747
RNA-Seq ExpressionCmc08g0223521
SyntenyCmc08g0223521
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025787.1 gag/pol protein [Cucumis melo var. makuwa]1.7e-57100Show/hide
Query:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG
        MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG
Subjt:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG

Query:  IVSRYQSNPDMIIEQL
        IVSRYQSNPDMIIEQL
Subjt:  IVSRYQSNPDMIIEQL
KAA0052272.1 gag/pol protein [Cucumis melo var. makuwa]5.0e-4991.74Show/hide
Query:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG
        MKDLENAQYVLGI+IVRNRKNKTL MSQTS+IDKMLSRYKMQNSKK +L YRYGIHLSKEQCPKTPQEV+DMSNIPYASA+GSLMYAMLCTRPDI YSVG
Subjt:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG

Query:  IVSRYQSNP
        IVSRYQSNP
Subjt:  IVSRYQSNP
TYK09668.1 gag/pol protein [Cucumis melo var. makuwa]1.7e-57100Show/hide
Query:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG
        MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG
Subjt:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG

Query:  IVSRYQSNPDMIIEQL
        IVSRYQSNPDMIIEQL
Subjt:  IVSRYQSNPDMIIEQL
TYK11050.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-4791.74Show/hide
Query:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG
        MKDL NAQYVLGIQIVRN KNKTL MSQTS+IDKMLSRYKMQNSKKG+L YRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTR DI YSVG
Subjt:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG

Query:  IVSRYQSNP
        IV+RYQSNP
Subjt:  IVSRYQSNP
TYK29680.1 putative polyprotein [Cucumis melo var. makuwa]5.0e-4986.67Show/hide
Query:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG
        MK L NAQYVLGIQIVRN+KNKTL MSQTS+IDKMLSRYKMQNSKKG+L YRYGIHLSKEQCPKTPQEVEDMSNIPYASA+GSLMYAMLCTRP+I YSVG
Subjt:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG

Query:  IVSRYQSNPDMIIEQLLRIF
        IVSRYQS  D+II Q L+IF
Subjt:  IVSRYQSNPDMIIEQLLRIF
TrEMBL top hitse value%identityAlignment
A0A5A7SM50 Gag/pol protein8.4e-58100Show/hide
Query:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG
        MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG
Subjt:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG

Query:  IVSRYQSNPDMIIEQL
        IVSRYQSNPDMIIEQL
Subjt:  IVSRYQSNPDMIIEQL
A0A5A7U945 Gag/pol protein2.4e-4991.74Show/hide
Query:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG
        MKDLENAQYVLGI+IVRNRKNKTL MSQTS+IDKMLSRYKMQNSKK +L YRYGIHLSKEQCPKTPQEV+DMSNIPYASA+GSLMYAMLCTRPDI YSVG
Subjt:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG

Query:  IVSRYQSNP
        IVSRYQSNP
Subjt:  IVSRYQSNP
A0A5D3CEL8 Gag/pol protein8.4e-58100Show/hide
Query:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG
        MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG
Subjt:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG

Query:  IVSRYQSNPDMIIEQL
        IVSRYQSNPDMIIEQL
Subjt:  IVSRYQSNPDMIIEQL
A0A5D3CI71 Gag/pol protein6.0e-4891.74Show/hide
Query:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG
        MKDL NAQYVLGIQIVRN KNKTL MSQTS+IDKMLSRYKMQNSKKG+L YRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTR DI YSVG
Subjt:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG

Query:  IVSRYQSNP
        IV+RYQSNP
Subjt:  IVSRYQSNP
A0A5D3E2A3 Putative polyprotein2.4e-4986.67Show/hide
Query:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG
        MK L NAQYVLGIQIVRN+KNKTL MSQTS+IDKMLSRYKMQNSKKG+L YRYGIHLSKEQCPKTPQEVEDMSNIPYASA+GSLMYAMLCTRP+I YSVG
Subjt:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG

Query:  IVSRYQSNPDMIIEQLLRIF
        IVSRYQS  D+II Q L+IF
Subjt:  IVSRYQSNPDMIIEQLLRIF
SwissProt top hitse value%identityAlignment
P04146 Copia protein2.0e-0833.61Show/hide
Query:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQN----SKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIF
        M DL   ++ +GI+I    +   + +SQ++++ K+LS++ M+N    S        Y +  S E C           N P  S IG LMY MLCTRPD+ 
Subjt:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQN----SKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIF

Query:  YSVGIVSRYQSNPDMIIEQLLR
         +V I+SRY S  +  + Q L+
Subjt:  YSVGIVSRYQSNPDMIIEQLLR
P0CV72 Secreted RxLR effector protein 1611.2e-0550Show/hide
Query:  MSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNP
        M N+PY SA+G++MY M+ TRPD+  +VG++S++ S+P
Subjt:  MSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNP
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-947.6e-2448.62Show/hide
Query:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG
        MKDL  AQ +LG++IVR R ++ L +SQ  +I+++L R+ M+N+K         + LSK+ CP T +E  +M+ +PY+SA+GSLMYAM+CTRPDI ++VG
Subjt:  MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVG

Query:  IVSRYQSNP
        +VSR+  NP
Subjt:  IVSRYQSNP
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGATTTGGAAAATGCACAATATGTTCTTGGTATCCAAATAGTTCGGAACCGTAAGAACAAAACACTAGTCATGTCTCAAACATCTCATATAGACAAAATGTTATC
AAGATATAAGATGCAGAATTCCAAAAAGGGTATGCTGTCGTACAGATATGGAATTCATTTATCAAAAGAACAATGTCCAAAGACACCTCAAGAAGTTGAGGATATGAGTA
ACATTCCCTATGCTTCTGCTATTGGAAGCTTGATGTACGCAATGTTATGTACTAGACCTGACATTTTCTATTCAGTAGGGATAGTTAGTAGATATCAGTCCAATCCTGAC
ATGATCATTGAACAGCTGTTAAGAATATTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGATTTGGAAAATGCACAATATGTTCTTGGTATCCAAATAGTTCGGAACCGTAAGAACAAAACACTAGTCATGTCTCAAACATCTCATATAGACAAAATGTTATC
AAGATATAAGATGCAGAATTCCAAAAAGGGTATGCTGTCGTACAGATATGGAATTCATTTATCAAAAGAACAATGTCCAAAGACACCTCAAGAAGTTGAGGATATGAGTA
ACATTCCCTATGCTTCTGCTATTGGAAGCTTGATGTACGCAATGTTATGTACTAGACCTGACATTTTCTATTCAGTAGGGATAGTTAGTAGATATCAGTCCAATCCTGAC
ATGATCATTGAACAGCTGTTAAGAATATTCTAA
Protein sequenceShow/hide protein sequence
MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNPD
MIIEQLLRIF