; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0223711 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0223711
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr08:13245054..13245734
RNA-Seq ExpressionCmc08g0223711
SyntenyCmc08g0223711
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025762.1 pol protein [Cucumis melo var. makuwa]7.1e-12198.67Show/hide
Query:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLKVSFLGHVVSSERASMDPQKIEVVTSWP
        MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLKVSFLGHVVSSERASMDPQKIEVVTSWP
Subjt:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLKVSFLGHVVSSERASMDPQKIEVVTSWP

Query:  RPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYAF
        RPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYAF
Subjt:  RPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYAF

Query:  RQLKSHEQHYTTHDLELAVAVFVLK
        RQLKSHEQHYTTHDLELAVAV +L+
Subjt:  RQLKSHEQHYTTHDLELAVAVFVLK

KAA0051925.1 pol protein [Cucumis melo var. makuwa]2.8e-10182.82Show/hide
Query:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLK-VSFLGHVVSSERASMDPQKIEVVTSW
        MSFGL N+P VFMDLMN++FK+FLD+F+IVFI DIL+YSKTEVEHEKHLHQVLETL+ANKLYAKFSKCEFWLK V+FLGHVVSSE  SMDP KIE V +W
Subjt:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLK-VSFLGHVVSSERASMDPQKIEVVTSW

Query:  PRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYA
        PRPSTV+E+ SFLGLAGYYRRF+EDFSRIAS LTQLTRKG+PFVWSP CESSFQELKQK VTAPVLTV +GSGSF+IYSD  KKGLGCV MQQGKVVAYA
Subjt:  PRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYA

Query:  FRQLKSHEQHYTTHDLELAVAVFVLKI
         RQLKSHEQ+Y THDLELA  VF LKI
Subjt:  FRQLKSHEQHYTTHDLELAVAVFVLKI

TYK09692.1 pol protein [Cucumis melo var. makuwa]7.1e-12198.67Show/hide
Query:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLKVSFLGHVVSSERASMDPQKIEVVTSWP
        MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLKVSFLGHVVSSERASMDPQKIEVVTSWP
Subjt:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLKVSFLGHVVSSERASMDPQKIEVVTSWP

Query:  RPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYAF
        RPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYAF
Subjt:  RPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYAF

Query:  RQLKSHEQHYTTHDLELAVAVFVLK
        RQLKSHEQHYTTHDLELAVAV +L+
Subjt:  RQLKSHEQHYTTHDLELAVAVFVLK

TYK12237.1 pol protein [Cucumis melo var. makuwa]2.8e-10182.82Show/hide
Query:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLK-VSFLGHVVSSERASMDPQKIEVVTSW
        MSFGL N+P VFMDLMN++FK+FLD+F+IVFI DIL+YSKTEVEHEKHLHQVLETL+ANKLYAKFSKCEFWLK V+FLGHVVSSE  SMDP KIE V +W
Subjt:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLK-VSFLGHVVSSERASMDPQKIEVVTSW

Query:  PRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYA
        PRPSTV+E+ SFLGLAGYYRRF+EDFSRIAS LTQLTRKG+PFVWSP CESSFQELKQK VTAPVLTV +GSGSF+IYSD  KKGLGCV MQQGKVVAYA
Subjt:  PRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYA

Query:  FRQLKSHEQHYTTHDLELAVAVFVLKI
         RQLKSHEQ+Y THDLELA  VF LKI
Subjt:  FRQLKSHEQHYTTHDLELAVAVFVLKI

TYK18480.1 pol protein [Cucumis melo var. makuwa]2.2e-10182.38Show/hide
Query:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWL-KVSFLGHVVSSERASMDPQKIEVVTSW
        MSFGL N+P VFMDLMN++FK+FLD+F+IVFI DIL+YSKTE EHE+HLHQVLETL+ANKLYAKFSKCEFWL KV+FLGHVVSSE  S+DP KIE VT+W
Subjt:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWL-KVSFLGHVVSSERASMDPQKIEVVTSW

Query:  PRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYA
        PRPSTV+E+ SFLGLAGYYRRF+EDFSRIAS LTQLTRKG+PFVWSP CESSFQELKQK VTAPVLTV +GSGSF+IYSD FKKGLGCV MQQGKVVAYA
Subjt:  PRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYA

Query:  FRQLKSHEQHYTTHDLELAVAVFVLKI
         RQLKSHEQ+Y THDLELA  VF LKI
Subjt:  FRQLKSHEQHYTTHDLELAVAVFVLKI

TrEMBL top hitse value%identityAlignment
A0A5A7SKV0 Pol protein3.4e-12198.67Show/hide
Query:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLKVSFLGHVVSSERASMDPQKIEVVTSWP
        MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLKVSFLGHVVSSERASMDPQKIEVVTSWP
Subjt:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLKVSFLGHVVSSERASMDPQKIEVVTSWP

Query:  RPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYAF
        RPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYAF
Subjt:  RPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYAF

Query:  RQLKSHEQHYTTHDLELAVAVFVLK
        RQLKSHEQHYTTHDLELAVAV +L+
Subjt:  RQLKSHEQHYTTHDLELAVAVFVLK

A0A5A7UDZ3 Reverse transcriptase1.4e-10182.82Show/hide
Query:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLK-VSFLGHVVSSERASMDPQKIEVVTSW
        MSFGL N+P VFMDLMN++FK+FLD+F+IVFI DIL+YSKTEVEHEKHLHQVLETL+ANKLYAKFSKCEFWLK V+FLGHVVSSE  SMDP KIE V +W
Subjt:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLK-VSFLGHVVSSERASMDPQKIEVVTSW

Query:  PRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYA
        PRPSTV+E+ SFLGLAGYYRRF+EDFSRIAS LTQLTRKG+PFVWSP CESSFQELKQK VTAPVLTV +GSGSF+IYSD  KKGLGCV MQQGKVVAYA
Subjt:  PRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYA

Query:  FRQLKSHEQHYTTHDLELAVAVFVLKI
         RQLKSHEQ+Y THDLELA  VF LKI
Subjt:  FRQLKSHEQHYTTHDLELAVAVFVLKI

A0A5D3CEI2 Pol protein3.4e-12198.67Show/hide
Query:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLKVSFLGHVVSSERASMDPQKIEVVTSWP
        MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLKVSFLGHVVSSERASMDPQKIEVVTSWP
Subjt:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLKVSFLGHVVSSERASMDPQKIEVVTSWP

Query:  RPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYAF
        RPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYAF
Subjt:  RPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYAF

Query:  RQLKSHEQHYTTHDLELAVAVFVLK
        RQLKSHEQHYTTHDLELAVAV +L+
Subjt:  RQLKSHEQHYTTHDLELAVAVFVLK

A0A5D3CJW2 Reverse transcriptase1.4e-10182.82Show/hide
Query:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLK-VSFLGHVVSSERASMDPQKIEVVTSW
        MSFGL N+P VFMDLMN++FK+FLD+F+IVFI DIL+YSKTEVEHEKHLHQVLETL+ANKLYAKFSKCEFWLK V+FLGHVVSSE  SMDP KIE V +W
Subjt:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLK-VSFLGHVVSSERASMDPQKIEVVTSW

Query:  PRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYA
        PRPSTV+E+ SFLGLAGYYRRF+EDFSRIAS LTQLTRKG+PFVWSP CESSFQELKQK VTAPVLTV +GSGSF+IYSD  KKGLGCV MQQGKVVAYA
Subjt:  PRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYA

Query:  FRQLKSHEQHYTTHDLELAVAVFVLKI
         RQLKSHEQ+Y THDLELA  VF LKI
Subjt:  FRQLKSHEQHYTTHDLELAVAVFVLKI

A0A5D3D4M7 Pol protein1.0e-10182.38Show/hide
Query:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWL-KVSFLGHVVSSERASMDPQKIEVVTSW
        MSFGL N+P VFMDLMN++FK+FLD+F+IVFI DIL+YSKTE EHE+HLHQVLETL+ANKLYAKFSKCEFWL KV+FLGHVVSSE  S+DP KIE VT+W
Subjt:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWL-KVSFLGHVVSSERASMDPQKIEVVTSW

Query:  PRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYA
        PRPSTV+E+ SFLGLAGYYRRF+EDFSRIAS LTQLTRKG+PFVWSP CESSFQELKQK VTAPVLTV +GSGSF+IYSD FKKGLGCV MQQGKVVAYA
Subjt:  PRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYA

Query:  FRQLKSHEQHYTTHDLELAVAVFVLKI
         RQLKSHEQ+Y THDLELA  VF LKI
Subjt:  FRQLKSHEQHYTTHDLELAVAVFVLKI

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.9e-3134.36Show/hide
Query:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFW-LKVSFLGHVVSSERASMDPQKIEVVTSW
        M FGL N+P  F   MN + +  L+   +V++ DI+V+S +  EH + L  V E L    L  +  KCEF   + +FLGHV++ +    +P+KIE +  +
Subjt:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFW-LKVSFLGHVVSSERASMDPQKIEVVTSW

Query:  PRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPF-VWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAY
        P P+   E+ +FLGL GYYR+F+ +F+ IA  +T+  +K       +P  +S+F++LK      P+L V + +  F + +D     LG V  Q G  ++Y
Subjt:  PRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPF-VWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAY

Query:  AFRQLKSHEQHYTTHDLELAVAVFVLK
          R L  HE +Y+T + EL   V+  K
Subjt:  AFRQLKSHEQHYTTHDLELAVAVFVLK

P10401 Retrovirus-related Pol polyprotein from transposon gypsy5.3e-2629.11Show/hide
Query:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLK-VSFLGHVVSSERASMDPQKIEVVTSW
        + FGL N+ ++F   ++ + +  +     V++ D++++S+ E +H +H+  VL+ L    +     K  F+ + V +LG +VS +    DP+K++ +  +
Subjt:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLK-VSFLGHVVSSERASMDPQKIEVVTSW

Query:  PRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTR-----------KGSPFVWSPTCESSFQELKQKFVTAPV-LTVSNGSGSFLIYSDVFKKGLGC
        P P  V +V SFLGLA YYR F++DF+ IA  +T + +           K  P  ++ T  ++FQ L+    +  V L   +    F + +D    G+G 
Subjt:  PRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTR-----------KGSPFVWSPTCESSFQELKQKFVTAPV-LTVSNGSGSFLIYSDVFKKGLGC

Query:  VFMQQGKVVAYAFRQLKSHEQHYTTHDLELAVAVFVL
        V  Q+G+ +    R LK  EQ+Y T++ EL   V+ L
Subjt:  VFMQQGKVVAYAFRQLKSHEQHYTTHDLELAVAVFVL

P20825 Retrovirus-related Pol polyprotein from transposon 2977.3e-2830.4Show/hide
Query:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLK-VSFLGHVVSSERASMDPQKIEVVTSW
        M FGL N+P  F   MN + +  L+   +V++ DI+++S +  EH   +  V   L    L  +  KCEF  K  +FLGH+V+ +    +P K++ + S+
Subjt:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLK-VSFLGHVVSSERASMDPQKIEVVTSW

Query:  PRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPF-VWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAY
        P P+   E+ +FLGL GYYR+F+ +++ IA  +T   +K +           +F++LK   +  P+L + +    F++ +D     LG V  Q G  +++
Subjt:  PRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPF-VWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAY

Query:  AFRQLKSHEQHYTTHDLELAVAVFVLK
          R L  HE +Y+  + EL   V+  K
Subjt:  AFRQLKSHEQHYTTHDLELAVAVFVLK

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein7.6e-2531.25Show/hide
Query:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWL-KVSFLGHVVSSERASMDPQKIEVVTSW
        M FGL+N+P+ F   M   F++    F+ V++ DIL++S++  EH KHL  VLE L+   L  K  KC+F   +  FLG+ +  ++ +    K   +  +
Subjt:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWL-KVSFLGHVVSSERASMDPQKIEVVTSW

Query:  PRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGK-----
        P P TV +   FLG+  YYRRF+ + S+IA  +       S   W+   + + ++LK     +PVL   N   ++ + +D  K G+G V  +        
Subjt:  PRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGK-----

Query:  -VVAYAFRQLKSHEQHYTTHDLEL
         VV Y  + L+S +++Y   +LEL
Subjt:  -VVAYAFRQLKSHEQHYTTHDLEL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus3.4e-2529.17Show/hide
Query:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFW-LKVSFLGHVVSSERASMDPQKIEVVTSW
        + FGL N+P +F  +++ + +  +     V+I DI+V+S+    H K+L  VL +L    L     K  F   +V FLG++V+++    DP+K+  ++  
Subjt:  MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFW-LKVSFLGHVVSSERASMDPQKIEVVTSW

Query:  PRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTR------KGS-----PFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCV
        P P++V E+  FLG+  YYR+F++D++++A  LT LTR      K S     P     T   SF +LK    ++ +L     +  F + +D     +G V
Subjt:  PRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTR------KGS-----PFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCV

Query:  FMQ----QGKVVAYAFRQLKSHEQHYTTHDLELAVAVFVL
          Q    + + +AY  R L   E++Y T + E+   ++ L
Subjt:  FMQ----QGKVVAYAFRQLKSHEQHYTTHDLELAVAVFVL

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein2.9e-1938.21Show/hide
Query:  HLHQVLETLQANKLYAKFSKCEFWL-KVSFLG--HVVSSERASMDPQKIEVVTSWPRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVW
        HL  VL+  + ++ YA   KC F   ++++LG  H++S E  S DP K+E +  WP P    E+  FLGL GYYRRF++++ +I   LT+L +K S   W
Subjt:  HLHQVLETLQANKLYAKFSKCEFWL-KVSFLG--HVVSSERASMDPQKIEVVTSWPRPSTVNEVSSFLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVW

Query:  SPTCESSFQELKQKFVTAPVLTV
        +     +F+ LK    T PVL +
Subjt:  SPTCESSFQELKQKFVTAPVLTV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTTGGCTTGATCAATTCTCCTACTGTGTTTATGGATCTGATGAACAAGATGTTTAAGAATTTCTTGGACACTTTTATTATAGTTTTTATTCATGACATCTTGGT
TTACTCTAAGACAGAGGTTGAGCATGAGAAGCATTTGCATCAGGTTTTGGAGACTCTTCAAGCCAATAAGCTATATGCAAAGTTTTCTAAGTGCGAGTTCTGGCTAAAGG
TGTCTTTTCTTGGCCATGTAGTATCCAGTGAGAGAGCCTCTATGGACCCACAGAAGATTGAAGTTGTGACCAGTTGGCCTCGACCTTCTACAGTTAATGAGGTTAGTAGT
TTTCTAGGTTTAGCAGGTTATTATAGAAGGTTCATGGAAGATTTCTCTCGTATAGCCAGTCTGTTGACTCAATTGACCAGAAAGGGGTCTCCTTTTGTTTGGAGTCCAAC
ATGTGAGAGTAGTTTCCAGGAGCTTAAGCAGAAGTTTGTGACTGCACCAGTCCTTACAGTGTCAAATGGGTCTGGAAGTTTTCTGATCTACAGTGATGTCTTCAAGAAAG
GACTAGGTTGTGTTTTTATGCAGCAAGGTAAGGTAGTTGCTTATGCCTTTCGTCAGTTGAAGAGTCATGAGCAGCACTACACTACCCATGATTTAGAGTTGGCAGTAGCG
GTTTTTGTACTGAAGATATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTTTTGGCTTGATCAATTCTCCTACTGTGTTTATGGATCTGATGAACAAGATGTTTAAGAATTTCTTGGACACTTTTATTATAGTTTTTATTCATGACATCTTGGT
TTACTCTAAGACAGAGGTTGAGCATGAGAAGCATTTGCATCAGGTTTTGGAGACTCTTCAAGCCAATAAGCTATATGCAAAGTTTTCTAAGTGCGAGTTCTGGCTAAAGG
TGTCTTTTCTTGGCCATGTAGTATCCAGTGAGAGAGCCTCTATGGACCCACAGAAGATTGAAGTTGTGACCAGTTGGCCTCGACCTTCTACAGTTAATGAGGTTAGTAGT
TTTCTAGGTTTAGCAGGTTATTATAGAAGGTTCATGGAAGATTTCTCTCGTATAGCCAGTCTGTTGACTCAATTGACCAGAAAGGGGTCTCCTTTTGTTTGGAGTCCAAC
ATGTGAGAGTAGTTTCCAGGAGCTTAAGCAGAAGTTTGTGACTGCACCAGTCCTTACAGTGTCAAATGGGTCTGGAAGTTTTCTGATCTACAGTGATGTCTTCAAGAAAG
GACTAGGTTGTGTTTTTATGCAGCAAGGTAAGGTAGTTGCTTATGCCTTTCGTCAGTTGAAGAGTCATGAGCAGCACTACACTACCCATGATTTAGAGTTGGCAGTAGCG
GTTTTTGTACTGAAGATATAG
Protein sequenceShow/hide protein sequence
MSFGLINSPTVFMDLMNKMFKNFLDTFIIVFIHDILVYSKTEVEHEKHLHQVLETLQANKLYAKFSKCEFWLKVSFLGHVVSSERASMDPQKIEVVTSWPRPSTVNEVSS
FLGLAGYYRRFMEDFSRIASLLTQLTRKGSPFVWSPTCESSFQELKQKFVTAPVLTVSNGSGSFLIYSDVFKKGLGCVFMQQGKVVAYAFRQLKSHEQHYTTHDLELAVA
VFVLKI