; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0223871 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0223871
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionBeta-galactosidase
Genome locationCMiso1.1chr08:13519910..13520776
RNA-Seq ExpressionCmc08g0223871
SyntenyCmc08g0223871
Gene Ontology termsGO:0006116 - NADH oxidation (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005777 - peroxisome (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003954 - NADH dehydrogenase activity (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR025724 - GAG-pre-integrase domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025363.1 Beta-galactosidase [Cucumis melo var. makuwa]8.2e-13891.22Show/hide
Query:  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEV
        LWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS+PYKPTQPF LIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSEV
Subjt:  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEV

Query:  SAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINRMS
         +IFQNFYHTI+TQFH KIAIL SDNGREFQNHNLSEFLASKGIVH  SCAYT QQN VAERKNRHL++VARSLMLSTSLPSYLWGDAILTAAHLINRM 
Subjt:  SAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINRMS

Query:  SRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPLH
        SRILHLQTPL+CLKESYPSTRLVS+VPLRVFGCTAYVH+F PNQTKFTPRAQACVFVGYPLH
Subjt:  SRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPLH

KAA0034386.1 Beta-galactosidase [Cucumis melo var. makuwa]8.2e-13891.22Show/hide
Query:  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEV
        LWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS+PYKPTQPF LIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSEV
Subjt:  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEV

Query:  SAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINRMS
         +IFQNFYHTI+TQFH KIAIL SDNGREFQNHNLSEFLASKGIVH  SCAYT QQN VAERKNRHL++VARSLMLSTSLPSYLWGDAILTAAHLINRM 
Subjt:  SAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINRMS

Query:  SRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPLH
        SRILHLQTPL+CLKESYPSTRLVS+VPLRVFGCTAYVH+F PNQTKFTPRAQACVFVGYPLH
Subjt:  SRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPLH

KAA0048203.1 Beta-galactosidase [Cucumis melo var. makuwa]8.2e-13891.22Show/hide
Query:  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEV
        LWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS+PYKPTQPF LIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSEV
Subjt:  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEV

Query:  SAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINRMS
         +IFQNFYHTI+TQFH KIAIL SDNGREFQNHNLSEFLASKGIVH  SCAYT QQN VAERKNRHL++VARSLMLSTSLPSYLWGDAILTAAHLINRM 
Subjt:  SAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINRMS

Query:  SRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPLH
        SRILHLQTPL+CLKESYPSTRLVS+VPLRVFGCTAYVH+F PNQTKFTPRAQACVFVGYPLH
Subjt:  SRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPLH

TYJ99952.1 Beta-galactosidase [Cucumis melo var. makuwa]8.2e-13891.22Show/hide
Query:  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEV
        LWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS+PYKPTQPF LIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSEV
Subjt:  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEV

Query:  SAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINRMS
         +IFQNFYHTI+TQFH KIAIL SDNGREFQNHNLSEFLASKGIVH  SCAYT QQN VAERKNRHL++VARSLMLSTSLPSYLWGDAILTAAHLINRM 
Subjt:  SAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINRMS

Query:  SRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPLH
        SRILHLQTPL+CLKESYPSTRLVS+VPLRVFGCTAYVH+F PNQTKFTPRAQACVFVGYPLH
Subjt:  SRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPLH

TYK08054.1 Beta-galactosidase [Cucumis melo var. makuwa]8.2e-13891.22Show/hide
Query:  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEV
        LWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS+PYKPTQPF LIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSEV
Subjt:  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEV

Query:  SAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINRMS
         +IFQNFYHTI+TQFH KIAIL SDNGREFQNHNLSEFLASKGIVH  SCAYT QQN VAERKNRHL++VARSLMLSTSLPSYLWGDAILTAAHLINRM 
Subjt:  SAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINRMS

Query:  SRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPLH
        SRILHLQTPL+CLKESYPSTRLVS+VPLRVFGCTAYVH+F PNQTKFTPRAQACVFVGYPLH
Subjt:  SRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPLH

TrEMBL top hitse value%identityAlignment
A0A5A7SM64 Beta-galactosidase4.0e-13891.22Show/hide
Query:  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEV
        LWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS+PYKPTQPF LIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSEV
Subjt:  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEV

Query:  SAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINRMS
         +IFQNFYHTI+TQFH KIAIL SDNGREFQNHNLSEFLASKGIVH  SCAYT QQN VAERKNRHL++VARSLMLSTSLPSYLWGDAILTAAHLINRM 
Subjt:  SAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINRMS

Query:  SRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPLH
        SRILHLQTPL+CLKESYPSTRLVS+VPLRVFGCTAYVH+F PNQTKFTPRAQACVFVGYPLH
Subjt:  SRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPLH

A0A5A7V0Y9 Beta-galactosidase4.0e-13891.22Show/hide
Query:  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEV
        LWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS+PYKPTQPF LIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSEV
Subjt:  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEV

Query:  SAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINRMS
         +IFQNFYHTI+TQFH KIAIL SDNGREFQNHNLSEFLASKGIVH  SCAYT QQN VAERKNRHL++VARSLMLSTSLPSYLWGDAILTAAHLINRM 
Subjt:  SAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINRMS

Query:  SRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPLH
        SRILHLQTPL+CLKESYPSTRLVS+VPLRVFGCTAYVH+F PNQTKFTPRAQACVFVGYPLH
Subjt:  SRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPLH

A0A5A7VLQ7 Beta-galactosidase4.0e-13891.22Show/hide
Query:  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEV
        LWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS+PYKPTQPF LIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSEV
Subjt:  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEV

Query:  SAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINRMS
         +IFQNFYHTI+TQFH KIAIL SDNGREFQNHNLSEFLASKGIVH  SCAYT QQN VAERKNRHL++VARSLMLSTSLPSYLWGDAILTAAHLINRM 
Subjt:  SAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINRMS

Query:  SRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPLH
        SRILHLQTPL+CLKESYPSTRLVS+VPLRVFGCTAYVH+F PNQTKFTPRAQACVFVGYPLH
Subjt:  SRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPLH

A0A5D3BJK7 Beta-galactosidase4.0e-13891.22Show/hide
Query:  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEV
        LWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS+PYKPTQPF LIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSEV
Subjt:  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEV

Query:  SAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINRMS
         +IFQNFYHTI+TQFH KIAIL SDNGREFQNHNLSEFLASKGIVH  SCAYT QQN VAERKNRHL++VARSLMLSTSLPSYLWGDAILTAAHLINRM 
Subjt:  SAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINRMS

Query:  SRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPLH
        SRILHLQTPL+CLKESYPSTRLVS+VPLRVFGCTAYVH+F PNQTKFTPRAQACVFVGYPLH
Subjt:  SRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPLH

A0A5D3C4T4 Beta-galactosidase4.0e-13891.22Show/hide
Query:  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEV
        LWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS+PYKPTQPF LIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSEV
Subjt:  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEV

Query:  SAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINRMS
         +IFQNFYHTI+TQFH KIAIL SDNGREFQNHNLSEFLASKGIVH  SCAYT QQN VAERKNRHL++VARSLMLSTSLPSYLWGDAILTAAHLINRM 
Subjt:  SAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINRMS

Query:  SRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPLH
        SRILHLQTPL+CLKESYPSTRLVS+VPLRVFGCTAYVH+F PNQTKFTPRAQACVFVGYPLH
Subjt:  SRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPLH

SwissProt top hitse value%identityAlignment
P04146 Copia protein8.7e-3435.56Show/hide
Query:  LWHFRLGHPNFTYM-----KYLF--PHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKP--TQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWV
        LWH R GH +   +     K +F    L   +++S   C+ C+  KQ R+ F     K    +P  ++HSDV GP    T   K +FV F+D  T     
Subjt:  LWHFRLGHPNFTYM-----KYLF--PHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKP--TQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWV

Query:  YLITDKSEVSAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYTQQ-NRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILT
        YLI  KS+V ++FQ+F    E  F+ K+  L  DNGRE+ ++ + +F   KGI +  +  +T Q N V+ER  R + + AR+++    L    WG+A+LT
Subjt:  YLITDKSEVSAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYTQQ-NRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILT

Query:  AAHLINRMSSRIL--HLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGY
        A +LINR+ SR L    +TP E      P  +      LRVFG T YVH     Q KF  ++   +FVGY
Subjt:  AAHLINRMSSRIL--HLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGY

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-945.1e-4236.02Show/hide
Query:  LWHFRLGHPNFTYMKYLFPHLFLKI--DVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKS
        LWH R+GH +   ++ L     +      +   CD C+  KQHRVSF +   +      L++SDV GP ++ +  G ++FVTFIDD +R  WVY++  K 
Subjt:  LWHFRLGHPNFTYMKYLFPHLFLKI--DVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKS

Query:  EVSAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINR
        +V  +FQ F+  +E +  +K+  L SDNG E+ +    E+ +S GI H  +   T Q N VAER NR +++  RS++    LP   WG+A+ TA +LINR
Subjt:  EVSAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINR

Query:  MSSRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGY
          S  L  + P     E   + + VS   L+VFGC A+ H     +TK   ++  C+F+GY
Subjt:  MSSRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGY

Q12491 Transposon Ty2-B Gag-Pol polyprotein1.4e-1830.09Show/hide
Query:  LWHFRLGHPNFTYMK---------YLFPHLFLKIDVSSLSCDVCI--RAKQHRVSFPSR-PYKPT-QPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTR
        L H  LGH NF  ++         YL        + S+  C  C+  ++ +HR    SR  Y+ + +PF  +H+D++GP      S   +F++F D+ TR
Subjt:  LWHFRLGHPNFTYMK---------YLFPHLFLKIDVSSLSCDVCI--RAKQHRVSFPSR-PYKPT-QPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTR

Query:  LTWVYLITDKSEVSA--IFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVH-PNSCAYTQQNRVAERKNRHLLKVARSLMLSTSLPSYLW
          WVY + D+ E S   +F +    I+ QF+ ++ ++  D G E+ N  L +F  ++GI     + A ++ + VAER NR LL   R+L+  + LP++LW
Subjt:  LTWVYLITDKSEVSA--IFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVH-PNSCAYTQQNRVAERKNRHLLKVARSLMLSTSLPSYLW

Query:  GDAILTAAHLINRMSS
          A+  +  + N + S
Subjt:  GDAILTAAHLINRMSS

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.4e-3634.6Show/hide
Query:  WHFRLGHPNFTYMKYLFPHLFLKIDVSS---LSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKS
        WH RLGHP  + +  +  +  L +   S   LSC  C+  K ++V F       T+P   I+SDVW  S + +    R++V F+D  TR TW+Y +  KS
Subjt:  WHFRLGHPNFTYMKYLFPHLFLKIDVSS---LSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKS

Query:  EVSAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINR
        +V   F  F + +E +F  +I    SDNG EF    L E+ +  GI H  S  +T + N ++ERK+RH+++   +L+   S+P   W  A   A +LINR
Subjt:  EVSAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINR

Query:  MSSRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPL
        + + +L L++P + L  + P+        LRVFGC  Y      NQ K   +++ CVF+GY L
Subjt:  MSSRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE27.1e-3634.22Show/hide
Query:  WHFRLGHPNFTYMKYLFPHLFLKIDVSS---LSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKS
        WH RLGHP+   +  +  +  L +   S   LSC  C   K H+V F +     ++P   I+SDVW  S + +    R++V F+D  TR TW+Y +  KS
Subjt:  WHFRLGHPNFTYMKYLFPHLFLKIDVSS---LSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKS

Query:  EVSAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINR
        +V   F  F   +E +F  +I  L SDNG EF    L ++L+  GI H  S  +T + N ++ERK+RH++++  +L+   S+P   W  A   A +LINR
Subjt:  EVSAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINR

Query:  MSSRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPL
        + + +L LQ+P + L    P+        L+VFGC  Y      N+ K   +++ C F+GY L
Subjt:  MSSRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATACCTCCGACAGTAGTATCTCTACGACTAGTTTACTGTCTTCCTATTTTAGCACCTCTGAACATGACTTTATGTTTGTGGCATTTTCGATTAGGTCACCCAAA
CTTTACGTATATGAAATATTTGTTTCCCCATCTCTTTCTTAAAATAGATGTCTCCTCGTTATCTTGTGATGTGTGCATTCGGGCAAAACAACATCGTGTTTCTTTTCCCT
CACGACCATATAAACCCACACAACCGTTTACCCTTATCCACAGTGACGTTTGGGGTCCCTCCAAGGTCACCACCTCATCTGGGAAAAGGTGGTTTGTAACCTTCATTGAT
GATCATACCCGTCTTACCTGGGTCTACCTTATCACCGATAAATCTGAGGTTTCTGCTATTTTCCAAAACTTCTATCACACCATTGAAACACAATTCCATAAAAAAATTGC
TATTCTTCTAAGTGACAACGGTCGGGAATTCCAAAACCATAACCTTAGTGAATTTCTAGCCTCTAAGGGGATTGTTCACCCAAACTCGTGCGCCTACACTCAACAAAATA
GAGTGGCCGAGCGAAAAAATCGTCACCTTTTGAAAGTAGCCCGTTCCCTTATGCTTTCCACTTCCCTTCCTTCATACCTGTGGGGAGATGCTATTCTTACAGCAGCTCAT
TTAATCAATAGAATGTCCTCTCGTATCCTCCACCTTCAAACTCCCTTGGAATGCCTTAAGGAGTCCTACCCCTCTACTCGTCTCGTTTCAAAGGTTCCTCTTCGTGTGTT
TGGGTGTACCGCTTATGTCCATAGTTTTTGCCCTAATCAGACCAAATTTACCCCTCGGGCTCAGGCTTGTGTGTTTGTTGGGTATCCCCTTCACTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGATACCTCCGACAGTAGTATCTCTACGACTAGTTTACTGTCTTCCTATTTTAGCACCTCTGAACATGACTTTATGTTTGTGGCATTTTCGATTAGGTCACCCAAA
CTTTACGTATATGAAATATTTGTTTCCCCATCTCTTTCTTAAAATAGATGTCTCCTCGTTATCTTGTGATGTGTGCATTCGGGCAAAACAACATCGTGTTTCTTTTCCCT
CACGACCATATAAACCCACACAACCGTTTACCCTTATCCACAGTGACGTTTGGGGTCCCTCCAAGGTCACCACCTCATCTGGGAAAAGGTGGTTTGTAACCTTCATTGAT
GATCATACCCGTCTTACCTGGGTCTACCTTATCACCGATAAATCTGAGGTTTCTGCTATTTTCCAAAACTTCTATCACACCATTGAAACACAATTCCATAAAAAAATTGC
TATTCTTCTAAGTGACAACGGTCGGGAATTCCAAAACCATAACCTTAGTGAATTTCTAGCCTCTAAGGGGATTGTTCACCCAAACTCGTGCGCCTACACTCAACAAAATA
GAGTGGCCGAGCGAAAAAATCGTCACCTTTTGAAAGTAGCCCGTTCCCTTATGCTTTCCACTTCCCTTCCTTCATACCTGTGGGGAGATGCTATTCTTACAGCAGCTCAT
TTAATCAATAGAATGTCCTCTCGTATCCTCCACCTTCAAACTCCCTTGGAATGCCTTAAGGAGTCCTACCCCTCTACTCGTCTCGTTTCAAAGGTTCCTCTTCGTGTGTT
TGGGTGTACCGCTTATGTCCATAGTTTTTGCCCTAATCAGACCAAATTTACCCCTCGGGCTCAGGCTTGTGTGTTTGTTGGGTATCCCCTTCACTAA
Protein sequenceShow/hide protein sequence
MMIPPTVVSLRLVYCLPILAPLNMTLCLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFID
DHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYTQQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAH
LINRMSSRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPLH