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Cmc08g0223911 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0223911
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr08:13540562..13540888
RNA-Seq ExpressionCmc08g0223911
SyntenyCmc08g0223911
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043631.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.9e-47100Show/hide
Query:  MQLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRG
        MQLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRG
Subjt:  MQLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRG

KAA0050527.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.7e-4391.84Show/hide
Query:  MQLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRGMG
        MQLQELVDKGYIRPSVSPWGA VLFVKKKDGTLRLCIDYRQLNKVTIR KYPLPRIDDLFD+LRGATLFSKIDLRSGYHQLKVRESDIAKT F+   G
Subjt:  MQLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRGMG

KAA0062270.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.7e-4391.84Show/hide
Query:  MQLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRGMG
        MQLQELVDKGYIRPSVSPWGA VLFVKKKDGTLRLCIDYRQLNKVTIR KYPLPRIDDLFD+LRGATLFSKIDLRSGYHQLKVRESDIAKT F+   G
Subjt:  MQLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRGMG

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.7e-4391.84Show/hide
Query:  MQLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRGMG
        MQLQELVDKGYIRPSVSPWGA VLFVKKKDGTLRLCIDYRQLNKVTIR KYPLPRIDDLFD+LRGATLFSKIDLRSGYHQLKVRESDIAKT F+   G
Subjt:  MQLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRGMG

TYK22952.1 reverse transcriptase [Cucumis melo var. makuwa]7.5e-4492.86Show/hide
Query:  MQLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRGMG
        MQLQELVDKGYIRPSVSPWGA VLFVKKKDGTLRLCIDYRQLNKVTIR KYPLP IDDLFD+LRGATLFSKIDLRSGYHQLKVRESDIAKTTFK   G
Subjt:  MQLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRGMG

TrEMBL top hitse value%identityAlignment
A0A5A7SPH3 Putative Gag-pol protein8.1e-4491.84Show/hide
Query:  MQLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRGMG
        MQLQELVDKGYIRPSVSPWGA VLFVKKKDGTLRLCIDYRQLNKVTIR KYPLPRIDDLFD+LRGA LFSKIDLRSGYHQLKVRESDIAKTTF+   G
Subjt:  MQLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRGMG

A0A5A7T3K4 Reverse transcriptase8.1e-4491.84Show/hide
Query:  MQLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRGMG
        MQLQELVDKGYIRPSVSPWGA VLFVKKKDGTLRLCIDYRQLNKVTIR KYPLPRIDDLFD+LRGATLFSKIDLRSGYHQLKVRESDIAKT F+   G
Subjt:  MQLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRGMG

A0A5A7U819 Reverse transcriptase8.1e-4491.84Show/hide
Query:  MQLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRGMG
        MQLQELVDKGYIRPSVSPWGA VLFVKKKDGTLRLCIDYRQLNKVTIR KYPLPRIDDLFD+LRGATLFSKIDLRSGYHQLKVRESDIAKT F+   G
Subjt:  MQLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRGMG

A0A5D3CEL4 Putative DNA/RNA polymerases superfamily protein9.2e-48100Show/hide
Query:  MQLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRG
        MQLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRG
Subjt:  MQLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRG

A0A5D3DHC6 Reverse transcriptase3.6e-4492.86Show/hide
Query:  MQLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRGMG
        MQLQELVDKGYIRPSVSPWGA VLFVKKKDGTLRLCIDYRQLNKVTIR KYPLP IDDLFD+LRGATLFSKIDLRSGYHQLKVRESDIAKTTFK   G
Subjt:  MQLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRGMG

SwissProt top hitse value%identityAlignment
P0CT41 Transposon Tf2-12 polyprotein5.3e-1639.8Show/hide
Query:  QLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRGMGI
        ++ + +  G IR S +     V+FV KK+GTLR+ +DY+ LNK      YPLP I+ L  +++G+T+F+K+DL+S YH ++VR+ D  K  F+   G+
Subjt:  QLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRGMGI

P31843 RNA-directed DNA polymerase homolog2.4e-1662.3Show/hide
Query:  TLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTT
        +LR+CIDYR L KVTI+ KYP+PR+DDLFD L  AT F+K+DLRSGY Q+++ + D  KTT
Subjt:  TLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTT

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein7.1e-2150.55Show/hide
Query:  LQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTF
        +Q+L+D  +I PS SP  + V+ V KKDGT RLC+DYR LNK TI   +PLPRID+L   +  A +F+ +DL SGYHQ+ +   D  KT F
Subjt:  LQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTF

Q99315 Transposon Ty3-G Gag-Pol polyprotein7.1e-2150.55Show/hide
Query:  LQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTF
        +Q+L+D  +I PS SP  + V+ V KKDGT RLC+DYR LNK TI   +PLPRID+L   +  A +F+ +DL SGYHQ+ +   D  KT F
Subjt:  LQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTF

Q9UR07 Transposon Tf2-11 polyprotein5.3e-1639.8Show/hide
Query:  QLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRGMGI
        ++ + +  G IR S +     V+FV KK+GTLR+ +DY+ LNK      YPLP I+ L  +++G+T+F+K+DL+S YH ++VR+ D  K  F+   G+
Subjt:  QLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRGMGI

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTTACAAGAACTGGTTGACAAGGGATACATCAGGCCTAGTGTATCACCTTGGGGAGCACTAGTGCTATTTGTGAAAAAGAAAGATGGTACCCTCAGATTA
TGTATTGACTATAGACAGTTAAACAAGGTTACAATACGTATCAAGTATCCTTTACCACGCATCGATGACTTATTTGATGAACTAAGGGGAGCAACATTATTCTCT
AAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAGACAACATTCAAACGAGGTATGGGCATTATGAGTTTGGAGTTATGT
CATTCGGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGTTACAAGAACTGGTTGACAAGGGATACATCAGGCCTAGTGTATCACCTTGGGGAGCACTAGTGCTATTTGTGAAAAAGAAAGATGGTACCCTCAGATTA
TGTATTGACTATAGACAGTTAAACAAGGTTACAATACGTATCAAGTATCCTTTACCACGCATCGATGACTTATTTGATGAACTAAGGGGAGCAACATTATTCTCT
AAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAGACAACATTCAAACGAGGTATGGGCATTATGAGTTTGGAGTTATGT
CATTCGGTTTAA
Protein sequenceShow/hide protein sequence
MQLQELVDKGYIRPSVSPWGALVLFVKKKDGTLRLCIDYRQLNKVTIRIKYPLPRIDDLFDELRGATLFSKIDLRSGYHQLKVRESDIAKTTFKRGMGIMSLELC
HSV