CuGenDBv2

Gene ID	Cmc08g0224111
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	ribosomal RNA-processing protein 17
Genome location	CMiso1.1chr08:13938486..13952417
RNA-Seq Expression	Cmc08g0224111
Synteny	Cmc08g0224111
Gene Ontology terms	GO:0005730 - nucleolus (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR019186 - Nucleolar protein 12

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008455785.1 PREDICTED: ribosomal RNA-processing protein 17 [Cucumis melo]

1.4e-93

100

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Query:  MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQND
        MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQND

Query:  DQEDEEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSRPKLRSKRDKKKGRKKK
        DQEDEEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSRPKLRSKRDKKKGRKKK
Subjt:  DQEDEEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSRPKLRSKRDKKKGRKKK

XP_022142095.1 ribosomal RNA-processing protein 17-like [Momordica charantia]

5.1e-75

82.99

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Query:  MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQND
        MVKNDG+EGGELAQP  RHIKKRALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK EK+LVLYGG+LPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQND

Query:  DQEDEEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSRPKLRSKRDKKKGRKKK
        D E+EEE+P AP SE  TYD+GN+KVTV TSEVSR+GEI PIDK QTA  QL+ KDKKHNLPITKKK FKKVAKQ+SRPK RSKRDKKKGRKKK
Subjt:  DQEDEEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSRPKLRSKRDKKKGRKKK

XP_023517913.1 ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]

2.0e-71

78.79

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Query:  MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQND
        MVKN+ EEGG L QPHARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK+EK+LVL+GGVLPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQND

Query:  D----QEDEEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSRPKLRSKRDKKKGRKKK
        D     EDEEE+PLAP SE  TYD+GN+KVTVTTSEV R+ EIDPIDKPQ + +QLL KDKKH+LP+TKKK FKKVA+++SR K RSK DKKKGRKKK
Subjt:  D----QEDEEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSRPKLRSKRDKKKGRKKK

XP_031740787.1 ribosomal RNA-processing protein 17 isoform X1 [Cucumis sativus]

1.7e-86

94.39

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Query:  MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQND
        MVKNDGEEGGELAQPHARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVL+GGVLPADRAVDDQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQND

Query:  DQEDEEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTA--IAQLLGKDKKHNLPITKKKLFKKVAKQRSRPKLRSKRDKKKGRKKK
        DQ +EEEEPLAP SEA TYDNGNVKVTVTTSEVSRE EIDPIDKPQTA   AQLLGKDKKHNLPITKKKLFKKVAKQR RPKLRSKRDKKKGRKKK
Subjt:  DQEDEEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTA--IAQLLGKDKKHNLPITKKKLFKKVAKQRSRPKLRSKRDKKKGRKKK

XP_038881021.1 nucleolar protein 12 [Benincasa hispida]

1.9e-77

83.33

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Query:  MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQND
        MV+NDGEEG ELAQPHARHIKKRAL+NKALSVSFNEKDLRD+VTGFHKRKKKRRKEA+KQ+EEA+RR RIEARKKR+LEKDLVLYGGVLPADR VD++ND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQND

Query:  D----QEDEEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSRPKLRSKRDKKKGRKKK
        D    +EDEEE+PLAPFSE  TYD+GN+KVTV TSEVSRE EIDPIDKPQTA  QL  KDKKHNLP+TKKK FKKVAKQRSRPK RSKRDK+KG+KKK
Subjt:  D----QEDEEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSRPKLRSKRDKKKGRKKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYB4 Uncharacterized protein

8.1e-87

94.39

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Query:  MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQND
        MVKNDGEEGGELAQPHARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVL+GGVLPADRAVDDQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQND

Query:  DQEDEEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTA--IAQLLGKDKKHNLPITKKKLFKKVAKQRSRPKLRSKRDKKKGRKKK
        DQ +EEEEPLAP SEA TYDNGNVKVTVTTSEVSRE EIDPIDKPQTA   AQLLGKDKKHNLPITKKKLFKKVAKQR RPKLRSKRDKKKGRKKK
Subjt:  DQEDEEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTA--IAQLLGKDKKHNLPITKKKLFKKVAKQRSRPKLRSKRDKKKGRKKK

A0A1S3C1A3 ribosomal RNA-processing protein 17

6.9e-94

100

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Query:  MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQND
        MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQND

Query:  DQEDEEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSRPKLRSKRDKKKGRKKK
        DQEDEEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSRPKLRSKRDKKKGRKKK
Subjt:  DQEDEEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSRPKLRSKRDKKKGRKKK

A0A6J1CL67 ribosomal RNA-processing protein 17-like

2.5e-75

82.99

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Query:  MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQND
        MVKNDG+EGGELAQP  RHIKKRALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK EK+LVLYGG+LPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQND

Query:  DQEDEEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSRPKLRSKRDKKKGRKKK
        D E+EEE+P AP SE  TYD+GN+KVTV TSEVSR+GEI PIDK QTA  QL+ KDKKHNLPITKKK FKKVAKQ+SRPK RSKRDKKKGRKKK
Subjt:  DQEDEEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSRPKLRSKRDKKKGRKKK

A0A6J1EG67 ribosomal RNA-processing protein 17

1.3e-71

79.29

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Query:  MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQND
        MVKN+ EEGG L QPHARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK+EKDLVL+GGVLPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQND

Query:  D----QEDEEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSRPKLRSKRDKKKGRKKK
        D     EDEEE+PLAP SE   YD+GN+KVTVTTSEV R+ EIDPIDKPQ + +QLL KDKKH+LPITKKK FKKVA+++SR K RSK DKKKGRKKK
Subjt:  D----QEDEEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSRPKLRSKRDKKKGRKKK

A0A6J1KRQ7 ribosomal RNA-processing protein 17

8.2e-71

78.28

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Query:  MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQND
        MVKN+  EGG L QP++RH+KK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK+EKDLVL+GGVLPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQND

Query:  D----QEDEEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSRPKLRSKRDKKKGRKKK
        D     EDEEE+PLAP SE  TYD+GN+KVTVTTSEV RE EIDPIDKPQ + +QLL KDKKH+LPITKKK FKKVA+++SR K RSK DKKKGRKKK
Subjt:  D----QEDEEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSRPKLRSKRDKKKGRKKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G11240.1 CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink).

4.6e-34

55.61

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Query:  EEGGELAQP-HARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQNDDQEDE
        EE G LA P  ARHI KRA KNK+L+VSF+EKDL+D+VTGFHKRKKKRRKEA+KQ+EEA RR RIEARK RKLE+ +V   G    D   +D+  D EDE
Subjt:  EEGGELAQP-HARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQNDDQEDE

Query:  EEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDK---KHNLPITKKKLFKKVAKQRSRPKLRSKRDKKK
        E EP A  S    YD G +KVTVTTSE+SRE E +PI K +T   +     K   K  +P+ K K  K+ +++RS  K   KRDKKK
Subjt:  EEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDK---KHNLPITKKKLFKKVAKQRSRPKLRSKRDKKK

Sequences

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CDS sequence

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ATGGTAAAGAACGACGGAGAAGAAGGGGGCGAACTTGCACAACCTCATGCTCGACATATAAAGAAGAGAGCTCTCAAGAACAAAGCACTTTCTGTCTCTTTCAATGAAAA
AGACTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGGAAGGAAGCAGAGAAGCAAAAAGAGGAAGCTATGCGGCGGATGCGCATCGAAGCACGAA
AAAAGAGAAAATTAGAAAAGGATCTCGTGCTATATGGTGGTGTTCTACCAGCTGACCGGGCAGTTGATGATCAGAATGATGATCAAGAGGATGAGGAAGAGGAGCCATTA
GCACCATTTTCTGAGGCAAGAACGTATGACAACGGAAATGTCAAAGTAACTGTGACAACAAGTGAGGTATCTCGGGAGGGCGAAATTGATCCAATTGACAAGCCACAGAC
AGCAATAGCTCAGTTGCTTGGAAAGGATAAGAAGCATAACCTGCCAATTACCAAAAAGAAGCTATTCAAGAAAGTAGCAAAACAGAGGTCAAGGCCAAAGCTTCGAAGTA
AAAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAG

mRNA sequence

Show/hide mRNA sequence

GTTATTTCATCAACAAAAAAAAAAGAAAAAAAAAAAGAAAAAACCTAAACACAGTGAGAGAGGGAAAAAACTACACGCAACCGTGGGAACAAACCGAAGCGCCGGAATTT
GGAGCTAAAAACGCACGGCGTCGGTCTTCTGTGTAGAGTGCGGAACTCAGGCGGTGTGTCTCAGTTTTGGAGGTTATAGCGGCGGGGTCTTTTGCTCTGTTCCGCGGCAG
CGTAGAAGTCGAGTTTGTTATTCTCTTTCAAGAGAGTTTTACACTTACAAGGCGGTGCCATGGTAAAGAACGACGGAGAAGAAGGGGGCGAACTTGCACAACCTCATGCT
CGACATATAAAGAAGAGAGCTCTCAAGAACAAAGCACTTTCTGTCTCTTTCAATGAAAAAGACTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAG
GAAGGAAGCAGAGAAGCAAAAAGAGGAAGCTATGCGGCGGATGCGCATCGAAGCACGAAAAAAGAGAAAATTAGAAAAGGATCTCGTGCTATATGGTGGTGTTCTACCAG
CTGACCGGGCAGTTGATGATCAGAATGATGATCAAGAGGATGAGGAAGAGGAGCCATTAGCACCATTTTCTGAGGCAAGAACGTATGACAACGGAAATGTCAAAGTAACT
GTGACAACAAGTGAGGTATCTCGGGAGGGCGAAATTGATCCAATTGACAAGCCACAGACAGCAATAGCTCAGTTGCTTGGAAAGGATAAGAAGCATAACCTGCCAATTAC
CAAAAAGAAGCTATTCAAGAAAGTAGCAAAACAGAGGTCAAGGCCAAAGCTTCGAAGTAAAAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAGATAATTATACTAAGCT
TCTTACTTACTATTTGCTAAATGTTCAATGCGATACGATTTATTTGTTTTCTAATGAGAATACGGAGTGATCTTGAGCATTGGGTGTCTTTGAGGGTTTTGTATTATTAC
ATTATAAAAGCTTACCCGTTTTGCAAACTGAAAGTGCAATTTTTCTTTTTATGTGCAGCTCAATTTGTTTTCATTCAGCATTCCTAGAAGAAAAAACAACAGATCATCTA
TGTATAGAAAAATTATCGTATTGCTTTACAAGAATGTACACGTTTGATGATTTATATATGTTTGGAATAACTAATTAGTTTTCTTTA

Protein sequence

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MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQNDDQEDEEEEPL
APFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSRPKLRSKRDKKKGRKKK

Cmc08g0224111 (gene) of Melon (Charmono) v1.1 genome