; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0224131 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0224131
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr08:13996699..13997624
RNA-Seq ExpressionCmc08g0224131
SyntenyCmc08g0224131
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041373 - Reverse transcriptase, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.8e-14886.69Show/hide
Query:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW
        MPF  TNAPA+FMDLMNRIFH+YLDQF+IVFIDDILVYSVDRE+HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVSAK VSVDPQKVEAVVNW
Subjt:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW

Query:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQIFQELKKRLVTN-------------LFCH-FLLGLGCVLIQDGNVIAYA
        ERP SATE+RSFLGLAGYYRRFIEDFSRLALPLTALTRKN KFEWSDKCEQ FQELKKRLVT              ++C    LGLGCVL+QDGNVIAYA
Subjt:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQIFQELKKRLVTN-------------LFCH-FLLGLGCVLIQDGNVIAYA

Query:  LRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKLRLQKSALCG
         RQLKEHECNYPTHDLELAAVVL+LKI RHYLFGEKCHIFTDHKSLKYIF+QKELNLRQRRWLELIKDYDCTIEYHPGK NVV DALSRK RL KSALCG
Subjt:  LRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKLRLQKSALCG

Query:  IRVALLNE
        IRVALLNE
Subjt:  IRVALLNE

KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.8e-14886.69Show/hide
Query:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW
        MPF  TNAPA+FMDLMNRIFH+YLDQF+IVFIDDILVYSVDRE+HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVSAK VSVDPQKVEAVVNW
Subjt:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW

Query:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQIFQELKKRLVTN-------------LFCH-FLLGLGCVLIQDGNVIAYA
        ERP SATE+RSFLGLAGYYRRFIEDFSRLALPLTALTRKN KFEWSDKCEQ FQELKKRLVT              ++C    LGLGCVL+QDGNVIAYA
Subjt:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQIFQELKKRLVTN-------------LFCH-FLLGLGCVLIQDGNVIAYA

Query:  LRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKLRLQKSALCG
         RQLKEHECNYPTHDLELAAVVL+LKI RHYLFGEKCHIFTDHKSLKYIF+QKELNLRQRRWLELIKDYDCTIEYHPGK NVV DALSRK RL KSALCG
Subjt:  LRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKLRLQKSALCG

Query:  IRVALLNE
        IRVALLNE
Subjt:  IRVALLNE

KAA0050527.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.8e-14886.69Show/hide
Query:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW
        MPF  TNAPA+FMDLMNRIFH+YLDQF+IVFIDDILVYSVDRE+HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVSAK VSVDPQKVEAVVNW
Subjt:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW

Query:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQIFQELKKRLVTN-------------LFCH-FLLGLGCVLIQDGNVIAYA
        ERP SATE+RSFLGLAGYYRRFIEDFSRLALPLTALTRKN KFEWSDKCEQ FQELKKRLVT              ++C    LGLGCVL+QDGNVIAYA
Subjt:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQIFQELKKRLVTN-------------LFCH-FLLGLGCVLIQDGNVIAYA

Query:  LRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKLRLQKSALCG
         RQLKEHECNYPTHDLELAAVVL+LKI RHYLFGEKCHIFTDHKSLKYIF+QKELNLRQRRWLELIKDYDCTIEYHPGK NVV DALSRK RL KSALCG
Subjt:  LRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKLRLQKSALCG

Query:  IRVALLNE
        IRVALLNE
Subjt:  IRVALLNE

KAA0062270.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.8e-14886.69Show/hide
Query:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW
        MPF  TNAPA+FMDLMNRIFH+YLDQF+IVFIDDILVYSVDRE+HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVSAK VSVDPQKVEAVVNW
Subjt:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW

Query:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQIFQELKKRLVTN-------------LFCH-FLLGLGCVLIQDGNVIAYA
        ERP SATE+RSFLGLAGYYRRFIEDFSRLALPLTALTRKN KFEWSDKCEQ FQELKKRLVT              ++C    LGLGCVL+QDGNVIAYA
Subjt:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQIFQELKKRLVTN-------------LFCH-FLLGLGCVLIQDGNVIAYA

Query:  LRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKLRLQKSALCG
         RQLKEHECNYPTHDLELAAVVL+LKI RHYLFGEKCHIFTDHKSLKYIF+QKELNLRQRRWLELIKDYDCTIEYHPGK NVV DALSRK RL KSALCG
Subjt:  LRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKLRLQKSALCG

Query:  IRVALLNE
        IRVALLNE
Subjt:  IRVALLNE

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.8e-14886.69Show/hide
Query:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW
        MPF  TNAPA+FMDLMNRIFH+YLDQF+IVFIDDILVYSVDRE+HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVSAK VSVDPQKVEAVVNW
Subjt:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW

Query:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQIFQELKKRLVTN-------------LFCH-FLLGLGCVLIQDGNVIAYA
        ERP SATE+RSFLGLAGYYRRFIEDFSRLALPLTALTRKN KFEWSDKCEQ FQELKKRLVT              ++C    LGLGCVL+QDGNVIAYA
Subjt:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQIFQELKKRLVTN-------------LFCH-FLLGLGCVLIQDGNVIAYA

Query:  LRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKLRLQKSALCG
         RQLKEHECNYPTHDLELAAVVL+LKI RHYLFGEKCHIFTDHKSLKYIF+QKELNLRQRRWLELIKDYDCTIEYHPGK NVV DALSRK RL KSALCG
Subjt:  LRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKLRLQKSALCG

Query:  IRVALLNE
        IRVALLNE
Subjt:  IRVALLNE

TrEMBL top hitse value%identityAlignment
A0A5A7T1Y5 Reverse transcriptase3.3e-14886.69Show/hide
Query:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW
        MPF  TNAPA+FMDLMNRIFH+YLDQF+IVFIDDILVYSVDRE+HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVSAK VSVDPQKVEAVVNW
Subjt:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW

Query:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQIFQELKKRLVTN-------------LFCH-FLLGLGCVLIQDGNVIAYA
        ERP SATE+RSFLGLAGYYRRFIEDFSRLALPLTALTRKN KFEWSDKCEQ FQELKKRLVT              ++C    LGLGCVL+QDGNVIAYA
Subjt:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQIFQELKKRLVTN-------------LFCH-FLLGLGCVLIQDGNVIAYA

Query:  LRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKLRLQKSALCG
         RQLKEHECNYPTHDLELAAVVL+LKI RHYLFGEKCHIFTDHKSLKYIF+QKELNLRQRRWLELIKDYDCTIEYHPGK NVV DALSRK RL KSALCG
Subjt:  LRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKLRLQKSALCG

Query:  IRVALLNE
        IRVALLNE
Subjt:  IRVALLNE

A0A5A7T3K4 Reverse transcriptase3.3e-14886.69Show/hide
Query:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW
        MPF  TNAPA+FMDLMNRIFH+YLDQF+IVFIDDILVYSVDRE+HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVSAK VSVDPQKVEAVVNW
Subjt:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW

Query:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQIFQELKKRLVTN-------------LFCH-FLLGLGCVLIQDGNVIAYA
        ERP SATE+RSFLGLAGYYRRFIEDFSRLALPLTALTRKN KFEWSDKCEQ FQELKKRLVT              ++C    LGLGCVL+QDGNVIAYA
Subjt:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQIFQELKKRLVTN-------------LFCH-FLLGLGCVLIQDGNVIAYA

Query:  LRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKLRLQKSALCG
         RQLKEHECNYPTHDLELAAVVL+LKI RHYLFGEKCHIFTDHKSLKYIF+QKELNLRQRRWLELIKDYDCTIEYHPGK NVV DALSRK RL KSALCG
Subjt:  LRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKLRLQKSALCG

Query:  IRVALLNE
        IRVALLNE
Subjt:  IRVALLNE

A0A5A7U2V7 Reverse transcriptase3.3e-14886.69Show/hide
Query:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW
        MPF  TNAPA+FMDLMNRIFH+YLDQF+IVFIDDILVYSVDRE+HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVSAK VSVDPQKVEAVVNW
Subjt:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW

Query:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQIFQELKKRLVTN-------------LFCH-FLLGLGCVLIQDGNVIAYA
        ERP SATE+RSFLGLAGYYRRFIEDFSRLALPLTALTRKN KFEWSDKCEQ FQELKKRLVT              ++C    LGLGCVL+QDGNVIAYA
Subjt:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQIFQELKKRLVTN-------------LFCH-FLLGLGCVLIQDGNVIAYA

Query:  LRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKLRLQKSALCG
         RQLKEHECNYPTHDLELAAVVL+LKI RHYLFGEKCHIFTDHKSLKYIF+QKELNLRQRRWLELIKDYDCTIEYHPGK NVV DALSRK RL KSALCG
Subjt:  LRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKLRLQKSALCG

Query:  IRVALLNE
        IRVALLNE
Subjt:  IRVALLNE

A0A5A7UUL6 Reverse transcriptase3.3e-14886.69Show/hide
Query:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW
        MPF  TNAPA+FMDLMNRIFH+YLDQF+IVFIDDILVYSVDRE+HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVSAK VSVDPQKVEAVVNW
Subjt:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW

Query:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQIFQELKKRLVTN-------------LFCH-FLLGLGCVLIQDGNVIAYA
        ERP SATE+RSFLGLAGYYRRFIEDFSRLALPLTALTRKN KFEWSDKCEQ FQELKKRLVT              ++C    LGLGCVL+QDGNVIAYA
Subjt:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQIFQELKKRLVTN-------------LFCH-FLLGLGCVLIQDGNVIAYA

Query:  LRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKLRLQKSALCG
         RQLKEHECNYPTHDLELAAVVL+LKI RHYLFGEKCHIFTDHKSLKYIF+QKELNLRQRRWLELIKDYDCTIEYHPGK NVV DALSRK RL KSALCG
Subjt:  LRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKLRLQKSALCG

Query:  IRVALLNE
        IRVALLNE
Subjt:  IRVALLNE

A0A5D3BHI1 Reverse transcriptase3.3e-14886.69Show/hide
Query:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW
        MPF  TNAPA+FMDLMNRIFH+YLDQF+IVFIDDILVYSVDRE+HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVSAK VSVDPQKVEAVVNW
Subjt:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW

Query:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQIFQELKKRLVTN-------------LFCH-FLLGLGCVLIQDGNVIAYA
        ERP SATE+RSFLGLAGYYRRFIEDFSRLALPLTALTRKN KFEWSDKCEQ FQELKKRLVT              ++C    LGLGCVL+QDGNVIAYA
Subjt:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQIFQELKKRLVTN-------------LFCH-FLLGLGCVLIQDGNVIAYA

Query:  LRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKLRLQKSALCG
         RQLKEHECNYPTHDLELAAVVL+LKI RHYLFGEKCHIFTDHKSLKYIF+QKELNLRQRRWLELIKDYDCTIEYHPGK NVV DALSRK RL KSALCG
Subjt:  LRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKLRLQKSALCG

Query:  IRVALLNE
        IRVALLNE
Subjt:  IRVALLNE

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.64.7e-5137.12Show/hide
Query:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW
        MPF   NAPA F   MN I    L++  +V++DDI+V+S   + H + L +V + L    L  +  KCEF  ++  FLGHV++   +  +P+K+EA+  +
Subjt:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW

Query:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSD-KCEQIFQELKKRL-------VTNLFCHFLL-------GLGCVLIQDGNVIAY
          PT   EI++FLGL GYYR+FI +F+ +A P+T   +KN K + ++ + +  F++LK  +       V +    F L        LG VL QDG+ ++Y
Subjt:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSD-KCEQIFQELKKRL-------VTNLFCHFLL-------GLGCVLIQDGNVIAY

Query:  ALRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKLRLQKSAL
          R L EHE NY T + EL A+V + K  RHYL G    I +DH+ L +++  K+ N +  RW   + ++D  I+Y  GK N V DALSR ++L+++ L
Subjt:  ALRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKLRLQKSAL

P10401 Retrovirus-related Pol polyprotein from transposon gypsy2.2e-4031.68Show/hide
Query:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW
        +PF   NA +IF   ++ +  + + +   V++DD++++S +   H  H+  VL+ L D  +     K  F+ E V +LG +VS      DP+KV+A+  +
Subjt:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW

Query:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTR-----------KNAKFEWSDKCEQIFQELKKRLVTN----LFCHF-----------LLGLGC
          P    ++RSFLGLA YYR FI+DF+ +A P+T + +           K    E+++     FQ L+  L +      +  F             G+G 
Subjt:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTR-----------KNAKFEWSDKCEQIFQELKKRLVTN----LFCHF-----------LLGLGC

Query:  VLIQDGNVIAYALRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEK-CHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDAL
        VL Q+G  I    R LK+ E NY T++ EL A+V +L   +++L+G +  +IFTDH+ L +    +  N + +RW   I  ++  + Y PGK N V DAL
Subjt:  VLIQDGNVIAYALRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEK-CHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDAL

Query:  SRK
        SR+
Subjt:  SRK

P20825 Retrovirus-related Pol polyprotein from transposon 2975.8e-4936.77Show/hide
Query:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW
        MPF   NAPA F   MN I    L++  +V++DDI+++S     H   +++V   L D  L  +  KCEF  ++  FLGH+V+   +  +P KV+A+V++
Subjt:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW

Query:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQI--FQELKKRLVTNLFCHF--------------LLGLGCVLIQDGNVIA
          PT   EIR+FLGL GYYR+FI +++ +A P+T+  +K  K + + K E I  F++LK  ++ +                    L LG VL Q+G+ I+
Subjt:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQI--FQELKKRLVTNLFCHF--------------LLGLGCVLIQDGNVIA

Query:  YALRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSR
        +  R L +HE NY   + EL A+V + K  RHYL G +  I +DH+ L+++ N KE   +  RW   + +Y   I+Y  GK N V DALSR
Subjt:  YALRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSR

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein3.0e-3732.66Show/hide
Query:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW
        MPF   NAP+ F   M   F     +F+ V++DDIL++S   E H +HL  VL+ L+++ L  K  KC+F  E+  FLG+ +  ++++    K  A+ ++
Subjt:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW

Query:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQIFQELKKRLVT-------NLFCHFLL-------GLGCVLIQDGN-----
          P +  + + FLG+  YYRRFI + S++A P+        K +W++K ++  ++LK  L         N   ++ L       G+G VL +  N     
Subjt:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQIFQELKKRLVT-------NLFCHFLL-------GLGCVLIQDGN-----

Query:  -VIAYALRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKL
         V+ Y  + L+  + NYP  +LEL  ++ +L   R+ L G+   + TDH SL  + N+ E   R +RWL+ +  YD T+EY  G  NVV DA+SR +
Subjt:  -VIAYALRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGEKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus5.4e-4736.72Show/hide
Query:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW
        +PF   NAPAIF  +++ I  +++ +   V+IDDI+V+S D + H ++LR+VL +L    L     K  F   QV FLG++V+A  +  DP+KV A+   
Subjt:  MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNW

Query:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTR---KNAKFEWSDKCE--------QIFQELKKRLVTNLFCHFLL--------------GLGCV
          PTS  E++ FLG+  YYR+FI+D++++A PLT LTR    N K   S K          Q F +LK  L ++    F                 +G V
Subjt:  ERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTR---KNAKFEWSDKCE--------QIFQELKKRLVTNLFCHFLL--------------GLGCV

Query:  LIQD----GNVIAYALRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGE-KCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVT
        L QD       IAY  R L + E NY T + E+ A++ SL   R YL+G     ++TDH+ L +    +  N + +RW   I++Y+C + Y PGK+NVV 
Subjt:  LIQD----GNVIAYALRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFGE-KCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVT

Query:  DALSR
        DALSR
Subjt:  DALSR

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein4.3e-2342.74Show/hide
Query:  HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLG--HVVSAKRVSVDPQKVEAVVNWERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEW
        HL +VLQ     Q YA   KC F   Q+ +LG  H++S + VS DP K+EA+V W  P + TE+R FLGL GYYRRF++++ ++  PLT L +KN+  +W
Subjt:  HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLG--HVVSAKRVSVDPQKVEAVVNWERPTSATEIRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEW

Query:  SDKCEQIFQELKKRLVT
        ++     F+ LK  + T
Subjt:  SDKCEQIFQELKKRLVT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATTCAGTTTCACGAATGCGCCAGCGATTTTCATGGATCTCATGAATAGGATCTTCCATCAGTATTTAGATCAGTTTATGATCGTATTCATTGATGATATATTAGT
TTACTCGGTTGACAGAGAAGCCCATGAGGAACATTTGAGGATTGTTTTACAGACTCTACGTGATAAACAGTTGTACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAAC
AAGTAGTATTTTTGGGACATGTAGTTTCAGCAAAAAGAGTTAGTGTCGATCCACAAAAAGTGGAAGCAGTTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAATACGT
AGTTTCTTGGGTTTGGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCACGATTGGCATTACCTCTGACCGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGA
TAAATGCGAGCAAATTTTTCAGGAATTGAAGAAAAGACTAGTCACAAACCTATTCTGCCACTTCCTGCTAGGATTAGGTTGTGTGCTTATACAAGATGGGAATGTAATAG
CTTATGCTTTAAGGCAGTTGAAGGAGCATGAGTGTAATTACCCTACCCATGATCTTGAGCTAGCAGCAGTTGTTTTATCATTAAAAATCGGGAGACACTATTTGTTCGGG
GAAAAGTGCCATATTTTCACAGATCATAAGAGTCTGAAGTATATTTTTAATCAGAAAGAGCTAAATCTGAGACAAAGGCGATGGCTAGAACTTATTAAAGATTATGATTG
TACTATAGAGTATCATCCAGGTAAGACTAACGTAGTAACGGATGCATTAAGTAGGAAGTTAAGACTTCAGAAGAGTGCTTTGTGTGGTATTCGAGTAGCTTTATTGAATG
AGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCATTCAGTTTCACGAATGCGCCAGCGATTTTCATGGATCTCATGAATAGGATCTTCCATCAGTATTTAGATCAGTTTATGATCGTATTCATTGATGATATATTAGT
TTACTCGGTTGACAGAGAAGCCCATGAGGAACATTTGAGGATTGTTTTACAGACTCTACGTGATAAACAGTTGTACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAAC
AAGTAGTATTTTTGGGACATGTAGTTTCAGCAAAAAGAGTTAGTGTCGATCCACAAAAAGTGGAAGCAGTTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAATACGT
AGTTTCTTGGGTTTGGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCACGATTGGCATTACCTCTGACCGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGA
TAAATGCGAGCAAATTTTTCAGGAATTGAAGAAAAGACTAGTCACAAACCTATTCTGCCACTTCCTGCTAGGATTAGGTTGTGTGCTTATACAAGATGGGAATGTAATAG
CTTATGCTTTAAGGCAGTTGAAGGAGCATGAGTGTAATTACCCTACCCATGATCTTGAGCTAGCAGCAGTTGTTTTATCATTAAAAATCGGGAGACACTATTTGTTCGGG
GAAAAGTGCCATATTTTCACAGATCATAAGAGTCTGAAGTATATTTTTAATCAGAAAGAGCTAAATCTGAGACAAAGGCGATGGCTAGAACTTATTAAAGATTATGATTG
TACTATAGAGTATCATCCAGGTAAGACTAACGTAGTAACGGATGCATTAAGTAGGAAGTTAAGACTTCAGAAGAGTGCTTTGTGTGGTATTCGAGTAGCTTTATTGAATG
AGTAA
Protein sequenceShow/hide protein sequence
MPFSFTNAPAIFMDLMNRIFHQYLDQFMIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKRVSVDPQKVEAVVNWERPTSATEIR
SFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQIFQELKKRLVTNLFCHFLLGLGCVLIQDGNVIAYALRQLKEHECNYPTHDLELAAVVLSLKIGRHYLFG
EKCHIFTDHKSLKYIFNQKELNLRQRRWLELIKDYDCTIEYHPGKTNVVTDALSRKLRLQKSALCGIRVALLNE