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Cmc08g0224191 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0224191
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionDEAD-box ATP-dependent RNA helicase 32
Genome locationCMiso1.1chr08:14054857..14056240
RNA-Seq ExpressionCmc08g0224191
SyntenyCmc08g0224191
Gene Ontology termsGO:0000027 - ribosomal large subunit assembly (biological process)
GO:0000470 - maturation of LSU-rRNA (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035872.1 hypothetical protein E6C27_scaffold56G00360 [Cucumis melo var. makuwa]1.0e-0960Show/hide
Query:  QPPSEIKLIGEFLLSTREYLVWLKSLGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF
        Q   +I +I       R  +V +   G+GKGRGKLASD+EGSVTCHMG QFCFRVYVSVF
Subjt:  QPPSEIKLIGEFLLSTREYLVWLKSLGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF
KAA0045385.1 hypothetical protein E6C27_scaffold442G00010 [Cucumis melo var. makuwa]1.0e-0962.5Show/hide
Query:  EIKLIGEFLLSTREYLVWLKSLGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF
        +I +I       R  +V +   G+GKGRGKLASDKEGSVTCHMG QFCFRVYV+VF
Subjt:  EIKLIGEFLLSTREYLVWLKSLGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF
KAA0051087.1 transposase [Cucumis melo var. makuwa]2.5e-1143.64Show/hide
Query:  EIKLIGEFLLSTREYLVWLKS------------------------------------------------------LGKGKGRGKLASDKEGSVTCHMGIQ
        EIKLIGEFLLS REY VWLKS                                                        +GKGRGKLASDKEGSVTCHMG Q
Subjt:  EIKLIGEFLLSTREYLVWLKS------------------------------------------------------LGKGKGRGKLASDKEGSVTCHMGIQ

Query:  FCFRVYVSVF
        FC+R YVSVF
Subjt:  FCFRVYVSVF
KAA0053369.1 hypothetical protein E6C27_scaffold428G00250 [Cucumis melo var. makuwa]6.1e-1094.29Show/hide
Query:  LGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF
        LGKGKGRGKLASD+EGSVTCHMG QFCFRVYVSVF
Subjt:  LGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF
TYJ99939.1 hypothetical protein E5676_scaffold701G00700 [Cucumis melo var. makuwa]7.9e-1094.29Show/hide
Query:  LGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF
        LG+GKGRGKLASDKEGSVTCHMG QFCFRVYVSVF
Subjt:  LGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF
TrEMBL top hitse value%identityAlignment
A0A5A7SXE7 Uncharacterized protein5.0e-1060Show/hide
Query:  QPPSEIKLIGEFLLSTREYLVWLKSLGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF
        Q   +I +I       R  +V +   G+GKGRGKLASD+EGSVTCHMG QFCFRVYVSVF
Subjt:  QPPSEIKLIGEFLLSTREYLVWLKSLGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF
A0A5A7TVG7 Uncharacterized protein5.0e-1062.5Show/hide
Query:  EIKLIGEFLLSTREYLVWLKSLGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF
        +I +I       R  +V +   G+GKGRGKLASDKEGSVTCHMG QFCFRVYV+VF
Subjt:  EIKLIGEFLLSTREYLVWLKSLGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF
A0A5A7UIS7 Uncharacterized protein2.9e-1094.29Show/hide
Query:  LGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF
        LGKGKGRGKLASD+EGSVTCHMG QFCFRVYVSVF
Subjt:  LGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF
A0A5D3BLS1 Uncharacterized protein3.8e-1094.29Show/hide
Query:  LGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF
        LG+GKGRGKLASDKEGSVTCHMG QFCFRVYVSVF
Subjt:  LGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF
A0A5D3CKP0 Transposase1.2e-1143.64Show/hide
Query:  EIKLIGEFLLSTREYLVWLKS------------------------------------------------------LGKGKGRGKLASDKEGSVTCHMGIQ
        EIKLIGEFLLS REY VWLKS                                                        +GKGRGKLASDKEGSVTCHMG Q
Subjt:  EIKLIGEFLLSTREYLVWLKS------------------------------------------------------LGKGKGRGKLASDKEGSVTCHMGIQ

Query:  FCFRVYVSVF
        FC+R YVSVF
Subjt:  FCFRVYVSVF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTTTTCCATCAAGGATAAGAGGATTTTCCAACCTCCATCTGAGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTGGCTAAAATCTCT
AGGCAAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAAAGAAGGATCCGTGACATGCCATATGGGGATTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAA
mRNA sequenceShow/hide mRNA sequence
GGTTCTTCATCTTCTTCTCTAAGATAACCCTCTGCTGTCGCCGCCTCATCAGTTGAAGTTAAGATTGGTCTCATCAGTTGAAGTTAAGATTGGTCTCTTTGGAAGCTTGA
TGATTTAAAGGGATGAGTTTTTCCATCAAGGATAAGAGGATTTTCCAACCTCCATCTGAGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTG
GCTAAAATCTCTAGGCAAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAAAGAAGGATCCGTGACATGCCATATGGGGATTCAGTTTTGCTTCCGCGTTTATGTTTCAG
TGTTTTAATATTCCGTTTTTAATGAAAATTTATTCTTCCCTCGTTTCAAAAAGTGTCTATTGTCATTGTTTCTCCTTAGTAATGACTTCGACTCAGTATAAGGAGTTGGG
TCGTTACAGTTCGTTAATATAATATATATATATATATA
Protein sequenceShow/hide protein sequence
MSFSIKDKRIFQPPSEIKLIGEFLLSTREYLVWLKSLGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF