; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0224231 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0224231
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr08:14119749..14120906
RNA-Seq ExpressionCmc08g0224231
SyntenyCmc08g0224231
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR021109 - Aspartic peptidase domain superfamily
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025998.1 pol protein [Cucumis melo var. makuwa]2.9e-19188.31Show/hide
Query:  MLDVTLLMLDMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEY
        MLDVTLL+LDMQDFDVILGMDWLSANHA+IDCF KE+VFNPPSGASFKF G  +VCIPKVISAMKASKLLSQGTW ILASV+D REPEVSLSSEPVV+EY
Subjt:  MLDVTLLMLDMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEY

Query:  PDVFPDELLGLLPPREIDFAIELEPGTAPISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLL
        PDVFPDEL GL PPRE+DFAIELEPGTAPISRAPYR+A  ELKELKVQLQ+LLDK FIRPSVSPW APVLF+KKKDGS MRLCIDYRELNKVTVKNRY L
Subjt:  PDVFPDELLGLLPPREIDFAIELEPGTAPISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLL

Query:  SRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHL
         RIDDLF+QLQ AT+FSKIDLRSGYHQLRIRD DIPK+AFRSRYGHYEF+VMSFGLTNA AVFM+LMNRVFKDFLD+FVIVFIDDILIYSKT+AEHEEHL
Subjt:  SRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHL

Query:  HQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT
        HQVLETLRANKLY KFSKCEFWL+KVTFLGHVVS+EGV VDPAKIEAVT+W +PSTVSE+ SFLGLAGYYRRFVE+FSRIASPLT
Subjt:  HQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT

KAA0043577.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-208100Show/hide
Query:  MLDVTLLMLDMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEY
        MLDVTLLMLDMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEY
Subjt:  MLDVTLLMLDMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEY

Query:  PDVFPDELLGLLPPREIDFAIELEPGTAPISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLL
        PDVFPDELLGLLPPREIDFAIELEPGTAPISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLL
Subjt:  PDVFPDELLGLLPPREIDFAIELEPGTAPISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLL

Query:  SRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHL
        SRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHL
Subjt:  SRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHL

Query:  HQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYR
        HQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYR
Subjt:  HQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYR

KAA0058812.1 pol protein [Cucumis melo var. makuwa]1.7e-19188.05Show/hide
Query:  MLDVTLLMLDMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEY
        MLDVTLL+LDMQDFDVILGMDWLSANHA+IDCF KE+VFNPPSGASFKF G  IVCIPKVISAMKASKLLSQGTW ILASV+D REPEVSLSSEPVV+EY
Subjt:  MLDVTLLMLDMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEY

Query:  PDVFPDELLGLLPPREIDFAIELEPGTAPISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLL
        PDVFPDEL GL PPRE+DFAIELEPGTAPISRAPYR+A  ELKELKVQLQ+LLDK FIRPSVSPW APVLF+KKKDGS MRLCIDYRELNKVT+KNRY L
Subjt:  PDVFPDELLGLLPPREIDFAIELEPGTAPISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLL

Query:  SRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHL
         RIDDLF+QLQ AT+FSKIDLRSGYHQLRIRD DIPK+AF SRYGHYEF+VMSFGLTNA AVFM+LMNRVFKDF+D+FVIVFIDDILIYSKT+AEHEEHL
Subjt:  SRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHL

Query:  HQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT
        HQVLETLRANKLY KFSKCEFWL+KVTFLGHVVS+EGV VDPAKIEAVT+WP+PSTVSE+ SFLGLAGYYRRFVE+FSRIASPLT
Subjt:  HQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT

KAA0060745.1 pol protein [Cucumis melo var. makuwa]1.0e-19188.31Show/hide
Query:  MLDVTLLMLDMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEY
        MLDVTLL+LDMQDFDVILGMDWLSANHA+IDCF KE+VFNPPSGASFKF G  +VCIPKVISAMKASKLLSQGTW ILASV+D REPEVSLSSEPVV+EY
Subjt:  MLDVTLLMLDMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEY

Query:  PDVFPDELLGLLPPREIDFAIELEPGTAPISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLL
        PDVFPDEL GL PPRE+DFAIELEPGTAPISRAPYR+A  ELKELKVQLQ+LLDK FIRPSVSPW APVLF+KKKDGS MRLCIDYRELNKVTVKNRY L
Subjt:  PDVFPDELLGLLPPREIDFAIELEPGTAPISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLL

Query:  SRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHL
         +IDDLF+QLQ AT+FSKIDLRSGYHQLRIRD DIPK+AFRSRYGHYEF+VMSFGLTNA AVFM+LMNRVFKDFLD+FVIVFIDDILIYSKT+AEHEEHL
Subjt:  SRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHL

Query:  HQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT
        HQVLETLRANKLY KFSKCEFWL+KVTFLGHVVS+EGV VDPAKIEAVT+WP+PSTVSE+ SFLGLAGYYRRFVE+FSRIASPLT
Subjt:  HQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT

TYK01306.1 pol protein [Cucumis melo var. makuwa]2.2e-19188.57Show/hide
Query:  MLDVTLLMLDMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEY
        ML+VTLL+LDMQDFDVILGMDWLSANHA+IDCF KE+VFNPPSGASFKF G  +VCIPKVISAMKASKLLSQGTW ILASV+D REPEVSLSSEPVV+EY
Subjt:  MLDVTLLMLDMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEY

Query:  PDVFPDELLGLLPPREIDFAIELEPGTAPISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLL
        PDVFPDEL GL PPRE+DFAIELEPGTAPISRAPYR+A  ELKELKVQLQ+LLDK FIRPSVSPW APVLF+KKKDGS MRLCIDYRELNKVTVKNRY L
Subjt:  PDVFPDELLGLLPPREIDFAIELEPGTAPISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLL

Query:  SRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHL
         RIDDLF+QLQ AT+FSKIDLRSGYHQLRIRDSDIPK+AFR RYGHYEFIVMSFGLTNA AVFM+LMNRVFKDFLD+FVIVFIDDILIYSKT+AEHEEHL
Subjt:  SRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHL

Query:  HQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT
        HQVLETLRANKLY KFSKCEFWL+KVTFLGHVVS+EGV VDPAKIEAVT+WP+PSTVSE+ SFLGLAGYYRRFVE+FSRIASPLT
Subjt:  HQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT

TrEMBL top hitse value%identityAlignment
A0A5A7SIJ5 Reverse transcriptase1.4e-19188.31Show/hide
Query:  MLDVTLLMLDMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEY
        MLDVTLL+LDMQDFDVILGMDWLSANHA+IDCF KE+VFNPPSGASFKF G  +VCIPKVISAMKASKLLSQGTW ILASV+D REPEVSLSSEPVV+EY
Subjt:  MLDVTLLMLDMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEY

Query:  PDVFPDELLGLLPPREIDFAIELEPGTAPISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLL
        PDVFPDEL GL PPRE+DFAIELEPGTAPISRAPYR+A  ELKELKVQLQ+LLDK FIRPSVSPW APVLF+KKKDGS MRLCIDYRELNKVTVKNRY L
Subjt:  PDVFPDELLGLLPPREIDFAIELEPGTAPISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLL

Query:  SRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHL
         RIDDLF+QLQ AT+FSKIDLRSGYHQLRIRD DIPK+AFRSRYGHYEF+VMSFGLTNA AVFM+LMNRVFKDFLD+FVIVFIDDILIYSKT+AEHEEHL
Subjt:  SRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHL

Query:  HQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT
        HQVLETLRANKLY KFSKCEFWL+KVTFLGHVVS+EGV VDPAKIEAVT+W +PSTVSE+ SFLGLAGYYRRFVE+FSRIASPLT
Subjt:  HQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT

A0A5A7USG7 Reverse transcriptase8.3e-19288.05Show/hide
Query:  MLDVTLLMLDMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEY
        MLDVTLL+LDMQDFDVILGMDWLSANHA+IDCF KE+VFNPPSGASFKF G  IVCIPKVISAMKASKLLSQGTW ILASV+D REPEVSLSSEPVV+EY
Subjt:  MLDVTLLMLDMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEY

Query:  PDVFPDELLGLLPPREIDFAIELEPGTAPISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLL
        PDVFPDEL GL PPRE+DFAIELEPGTAPISRAPYR+A  ELKELKVQLQ+LLDK FIRPSVSPW APVLF+KKKDGS MRLCIDYRELNKVT+KNRY L
Subjt:  PDVFPDELLGLLPPREIDFAIELEPGTAPISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLL

Query:  SRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHL
         RIDDLF+QLQ AT+FSKIDLRSGYHQLRIRD DIPK+AF SRYGHYEF+VMSFGLTNA AVFM+LMNRVFKDF+D+FVIVFIDDILIYSKT+AEHEEHL
Subjt:  SRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHL

Query:  HQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT
        HQVLETLRANKLY KFSKCEFWL+KVTFLGHVVS+EGV VDPAKIEAVT+WP+PSTVSE+ SFLGLAGYYRRFVE+FSRIASPLT
Subjt:  HQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT

A0A5A7V4E4 Reverse transcriptase4.9e-19288.31Show/hide
Query:  MLDVTLLMLDMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEY
        MLDVTLL+LDMQDFDVILGMDWLSANHA+IDCF KE+VFNPPSGASFKF G  +VCIPKVISAMKASKLLSQGTW ILASV+D REPEVSLSSEPVV+EY
Subjt:  MLDVTLLMLDMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEY

Query:  PDVFPDELLGLLPPREIDFAIELEPGTAPISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLL
        PDVFPDEL GL PPRE+DFAIELEPGTAPISRAPYR+A  ELKELKVQLQ+LLDK FIRPSVSPW APVLF+KKKDGS MRLCIDYRELNKVTVKNRY L
Subjt:  PDVFPDELLGLLPPREIDFAIELEPGTAPISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLL

Query:  SRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHL
         +IDDLF+QLQ AT+FSKIDLRSGYHQLRIRD DIPK+AFRSRYGHYEF+VMSFGLTNA AVFM+LMNRVFKDFLD+FVIVFIDDILIYSKT+AEHEEHL
Subjt:  SRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHL

Query:  HQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT
        HQVLETLRANKLY KFSKCEFWL+KVTFLGHVVS+EGV VDPAKIEAVT+WP+PSTVSE+ SFLGLAGYYRRFVE+FSRIASPLT
Subjt:  HQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT

A0A5D3BSV9 Reverse transcriptase1.1e-19188.57Show/hide
Query:  MLDVTLLMLDMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEY
        ML+VTLL+LDMQDFDVILGMDWLSANHA+IDCF KE+VFNPPSGASFKF G  +VCIPKVISAMKASKLLSQGTW ILASV+D REPEVSLSSEPVV+EY
Subjt:  MLDVTLLMLDMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEY

Query:  PDVFPDELLGLLPPREIDFAIELEPGTAPISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLL
        PDVFPDEL GL PPRE+DFAIELEPGTAPISRAPYR+A  ELKELKVQLQ+LLDK FIRPSVSPW APVLF+KKKDGS MRLCIDYRELNKVTVKNRY L
Subjt:  PDVFPDELLGLLPPREIDFAIELEPGTAPISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLL

Query:  SRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHL
         RIDDLF+QLQ AT+FSKIDLRSGYHQLRIRDSDIPK+AFR RYGHYEFIVMSFGLTNA AVFM+LMNRVFKDFLD+FVIVFIDDILIYSKT+AEHEEHL
Subjt:  SRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHL

Query:  HQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT
        HQVLETLRANKLY KFSKCEFWL+KVTFLGHVVS+EGV VDPAKIEAVT+WP+PSTVSE+ SFLGLAGYYRRFVE+FSRIASPLT
Subjt:  HQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT

A0A5D3D8C3 Ty3-gypsy retrotransposon protein1.3e-208100Show/hide
Query:  MLDVTLLMLDMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEY
        MLDVTLLMLDMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEY
Subjt:  MLDVTLLMLDMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEY

Query:  PDVFPDELLGLLPPREIDFAIELEPGTAPISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLL
        PDVFPDELLGLLPPREIDFAIELEPGTAPISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLL
Subjt:  PDVFPDELLGLLPPREIDFAIELEPGTAPISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLL

Query:  SRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHL
        SRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHL
Subjt:  SRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHL

Query:  HQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYR
        HQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYR
Subjt:  HQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYR

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.4e-5039.27Show/hide
Query:  KELKVQLQKLLDKSFIRPSVSPWRAPV-LFMKKKDGS---IMRLCIDYRELNKVTVKNRYLLSRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKS
        +E++ Q+Q +L++  IR S SP+ +P+ +  KK+D S     R+ IDYR+LN++TV +R+ +  +D++  +L     F+ IDL  G+HQ+ +    + K+
Subjt:  KELKVQLQKLLDKSFIRPSVSPWRAPV-LFMKKKDGS---IMRLCIDYRELNKVTVKNRYLLSRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKS

Query:  AFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHLHQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGV
        AF +++GHYE++ M FGL NA A F   MN + +  L+   +V++DDI+++S +  EH + L  V E L    L ++  KCEF  ++ TFLGHV++ +G+
Subjt:  AFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHLHQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGV

Query:  FVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT
          +P KIEA+  +P P+   E+ +FLGL GYYR+F+ NF+ IA P+T
Subjt:  FVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT

P20825 Retrovirus-related Pol polyprotein from transposon 2972.1e-5137.4Show/hide
Query:  APISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKK----DGSIMRLCIDYRELNKVTVKNRYLLSRIDDLFNQLQEATIFSKIDLRS
        +PI    Y +A T   E++ Q+Q++L++  IR S SP+ +P   + KK      +  R+ IDYR+LN++T+ +RY +  +D++  +L +   F+ IDL  
Subjt:  APISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKK----DGSIMRLCIDYRELNKVTVKNRYLLSRIDDLFNQLQEATIFSKIDLRS

Query:  GYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHLHQVLETLRANKLYVKFSKCEFWL
        G+HQ+ + +  I K+AF ++ GHYE++ M FGL NA A F   MN + +  L+   +V++DDI+I+S +  EH   +  V   L    L ++  KCEF  
Subjt:  GYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHLHQVLETLRANKLYVKFSKCEFWL

Query:  KKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT
        K+  FLGH+V+ +G+  +P K++A+ S+P P+   E+ +FLGL GYYR+F+ N++ IA P+T
Subjt:  KKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.2e-5437.8Show/hide
Query:  KASKLLSQGTWSILASVLDTREPEVSLSSEP---------VVKEYPDVFPDELLGLLPPREIDF-------AIELEPGTAPISRAPYRIASTELKELKVQ
        +AS L   G +S + S + + EP  +  S           + ++Y ++  ++    LPPR  D         IE++PG       PY +     +E+   
Subjt:  KASKLLSQGTWSILASVLDTREPEVSLSSEP---------VVKEYPDVFPDELLGLLPPREIDF-------AIELEPGTAPISRAPYRIASTELKELKVQ

Query:  LQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLLSRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYE
        +QKLLD  FI PS SP  +PV+ + KKDG+  RLC+DYR LNK T+ + + L RID+L +++  A IF+ +DL SGYHQ+ +   D  K+AF +  G YE
Subjt:  LQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLLSRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYE

Query:  FIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHLHQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAV
        + VM FGL NA + F   M   F+D    FV V++DDILI+S++  EH +HL  VLE L+   L VK  KC+F  ++  FLG+ +  + +     K  A+
Subjt:  FIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHLHQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAV

Query:  TSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPL
          +P P TV +   FLG+  YYRRF+ N S+IA P+
Subjt:  TSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.3e-4830.43Show/hide
Query:  DVTLLML-DMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEYP
        D+T  +L ++  FD I+G D L    A +D     ++  P  G     +    + +  +++A         GT  IL S+L                E+P
Subjt:  DVTLLML-DMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEYP

Query:  DVFPDELLGLLPPREIDFAIELEPGT---APISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKK----DGSIMRLCIDYRELNKVTV
         +F   L G+     ++ A++ E  T    PI    Y        E++ Q+ +LL    IRPS SP+ +P+  + KK         R+ +D++ LN VT+
Subjt:  DVFPDELLGLLPPREIDFAIELEPGT---APISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKK----DGSIMRLCIDYRELNKVTV

Query:  KNRYLLSRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKA
         + Y +  I+     L  A  F+ +DL SG+HQ+ +++SDIPK+AF +  G YEF+ + FGL NA A+F  +++ + ++ +     V+IDDI+++S+   
Subjt:  KNRYLLSRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKA

Query:  EHEEHLHQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT
         H ++L  VL +L    L V   K  F   +V FLG++V+ +G+  DP K+ A++  P P++V E+  FLG+  YYR+F+++++++A PLT
Subjt:  EHEEHLHQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.2e-5437.8Show/hide
Query:  KASKLLSQGTWSILASVLDTREPEVSLSSEP---------VVKEYPDVFPDELLGLLPPREIDF-------AIELEPGTAPISRAPYRIASTELKELKVQ
        +AS L   G +S + S + + EP  +  S           + ++Y ++  ++    LPPR  D         IE++PG       PY +     +E+   
Subjt:  KASKLLSQGTWSILASVLDTREPEVSLSSEP---------VVKEYPDVFPDELLGLLPPREIDF-------AIELEPGTAPISRAPYRIASTELKELKVQ

Query:  LQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLLSRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYE
        +QKLLD  FI PS SP  +PV+ + KKDG+  RLC+DYR LNK T+ + + L RID+L +++  A IF+ +DL SGYHQ+ +   D  K+AF +  G YE
Subjt:  LQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLLSRIDDLFNQLQEATIFSKIDLRSGYHQLRIRDSDIPKSAFRSRYGHYE

Query:  FIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHLHQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAV
        + VM FGL NA + F   M   F+D    FV V++DDILI+S++  EH +HL  VLE L+   L VK  KC+F  ++  FLG+ +  + +     K  A+
Subjt:  FIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHLHQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSNEGVFVDPAKIEAV

Query:  TSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPL
          +P P TV +   FLG+  YYRRF+ N S+IA P+
Subjt:  TSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPL

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein3.7e-1946.07Show/hide
Query:  HLHQVLETLRANKLYVKFSKCEFWLKKVTFLG--HVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT
        HL  VL+    ++ Y    KC F   ++ +LG  H++S EGV  DPAK+EA+  WP+P   +E+  FLGL GYYRRFV+N+ +I  PLT
Subjt:  HLHQVLETLRANKLYVKFSKCEFWLKKVTFLG--HVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGATGTGACCTTACTAATGTTAGACATGCAGGATTTCGACGTAATCCTAGGCATGGATTGGTTGTCTGCTAACCATGCAAGTATAGACTGTTTCCGTAAGGAAAT
CGTTTTTAATCCCCCCTCTGGGGCTAGTTTCAAATTTATGGGGACAAGAATTGTATGTATACCCAAGGTCATCTCAGCTATGAAGGCTAGTAAACTACTCAGCCAGGGTA
CTTGGAGCATCTTGGCAAGTGTATTAGATACCAGAGAACCAGAAGTTTCCTTGTCCTCCGAACCAGTGGTAAAGGAGTACCCTGATGTATTTCCTGACGAGCTTCTAGGA
CTTCTACCTCCCAGGGAGATAGACTTCGCCATCGAGTTAGAGCCAGGCACTGCTCCTATCTCAAGGGCCCCTTACAGAATAGCTTCAACTGAGCTAAAGGAGCTGAAGGT
GCAGTTGCAAAAGTTGCTGGACAAGAGTTTCATTCGACCCAGTGTGTCACCTTGGAGAGCACCAGTGTTGTTCATGAAGAAGAAGGATGGGTCAATAATGCGCCTTTGCA
TTGACTATAGAGAGCTGAACAAGGTGACAGTCAAGAACCGCTATCTCTTGTCCAGGATTGATGATTTGTTCAATCAGTTGCAAGAAGCCACCATCTTTTCTAAGATCGAC
CTACGATCAGGCTACCACCAGCTGAGGATCAGGGATAGTGATATTCCTAAGAGCGCTTTCCGTTCCAGATACGGGCATTACGAGTTCATTGTGATGTCCTTTGGTTTGAC
TAATGCTCATGCGGTATTCATGAACTTGATGAACAGGGTGTTTAAGGACTTCTTAGACACATTTGTCATAGTTTTCATTGACGACATTTTGATTTACTCCAAGACTAAGG
CTGAGCATGAAGAGCATTTGCATCAGGTTTTGGAGACTCTTCGAGCTAATAAGTTGTATGTCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGGTGACTTTTCTCGGC
CATGTGGTTTCCAATGAGGGAGTTTTTGTGGATCCAGCAAAGATCGAAGCAGTTACTAGTTGGCCTCAACCGTCTACAGTTAGCGAGGTTGATAGTTTCCTGGGTCTAGC
AGGTTACTACAGGAGGTTCGTGGAAAACTTCTCTCGTATAGCCAGTCCCTTGACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTAGATGTGACCTTACTAATGTTAGACATGCAGGATTTCGACGTAATCCTAGGCATGGATTGGTTGTCTGCTAACCATGCAAGTATAGACTGTTTCCGTAAGGAAAT
CGTTTTTAATCCCCCCTCTGGGGCTAGTTTCAAATTTATGGGGACAAGAATTGTATGTATACCCAAGGTCATCTCAGCTATGAAGGCTAGTAAACTACTCAGCCAGGGTA
CTTGGAGCATCTTGGCAAGTGTATTAGATACCAGAGAACCAGAAGTTTCCTTGTCCTCCGAACCAGTGGTAAAGGAGTACCCTGATGTATTTCCTGACGAGCTTCTAGGA
CTTCTACCTCCCAGGGAGATAGACTTCGCCATCGAGTTAGAGCCAGGCACTGCTCCTATCTCAAGGGCCCCTTACAGAATAGCTTCAACTGAGCTAAAGGAGCTGAAGGT
GCAGTTGCAAAAGTTGCTGGACAAGAGTTTCATTCGACCCAGTGTGTCACCTTGGAGAGCACCAGTGTTGTTCATGAAGAAGAAGGATGGGTCAATAATGCGCCTTTGCA
TTGACTATAGAGAGCTGAACAAGGTGACAGTCAAGAACCGCTATCTCTTGTCCAGGATTGATGATTTGTTCAATCAGTTGCAAGAAGCCACCATCTTTTCTAAGATCGAC
CTACGATCAGGCTACCACCAGCTGAGGATCAGGGATAGTGATATTCCTAAGAGCGCTTTCCGTTCCAGATACGGGCATTACGAGTTCATTGTGATGTCCTTTGGTTTGAC
TAATGCTCATGCGGTATTCATGAACTTGATGAACAGGGTGTTTAAGGACTTCTTAGACACATTTGTCATAGTTTTCATTGACGACATTTTGATTTACTCCAAGACTAAGG
CTGAGCATGAAGAGCATTTGCATCAGGTTTTGGAGACTCTTCGAGCTAATAAGTTGTATGTCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGGTGACTTTTCTCGGC
CATGTGGTTTCCAATGAGGGAGTTTTTGTGGATCCAGCAAAGATCGAAGCAGTTACTAGTTGGCCTCAACCGTCTACAGTTAGCGAGGTTGATAGTTTCCTGGGTCTAGC
AGGTTACTACAGGAGGTTCGTGGAAAACTTCTCTCGTATAGCCAGTCCCTTGACTTAG
Protein sequenceShow/hide protein sequence
MLDVTLLMLDMQDFDVILGMDWLSANHASIDCFRKEIVFNPPSGASFKFMGTRIVCIPKVISAMKASKLLSQGTWSILASVLDTREPEVSLSSEPVVKEYPDVFPDELLG
LLPPREIDFAIELEPGTAPISRAPYRIASTELKELKVQLQKLLDKSFIRPSVSPWRAPVLFMKKKDGSIMRLCIDYRELNKVTVKNRYLLSRIDDLFNQLQEATIFSKID
LRSGYHQLRIRDSDIPKSAFRSRYGHYEFIVMSFGLTNAHAVFMNLMNRVFKDFLDTFVIVFIDDILIYSKTKAEHEEHLHQVLETLRANKLYVKFSKCEFWLKKVTFLG
HVVSNEGVFVDPAKIEAVTSWPQPSTVSEVDSFLGLAGYYRRFVENFSRIASPLT