; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0224281 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0224281
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr08:14166875..14167624
RNA-Seq ExpressionCmc08g0224281
SyntenyCmc08g0224281
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.1e-10178.31Show/hide
Query:  MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRT
        M EAAVSVGKL SL+AHFQV+P LIDRIIKAQLDDARLRKLAEEVRQNQRLNYSL+ D ALMK DRLCVPSDQTIKDQIL+EAHSSAYAMHPGSTKVY T
Subjt:  MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRT

Query:  LKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVD
        LKKHYWW G+KREIADYVAKCLICQQVKPERQRPAGLLNPLPV EWKWEH                                    VTFTLDK AKLYVD
Subjt:  LKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVD

Query:  KIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFHPQIDGQ
        KIVSAYGAP+SIVSDRDS+FTSKFWPSLQQALGTKLHFSTAFHPQ DGQ
Subjt:  KIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFHPQIDGQ

KAA0036812.1 reverse transcriptase [Cucumis melo var. makuwa]4.9e-12388.76Show/hide
Query:  MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRT
        MGE AVSVGKL SL+AHFQV+P LIDRIIK QLDDA LRKLAE+VRQNQR NYSLRG GALMK DRLCVPSDQ IKDQILEEAHS AYA HPGSTK+YRT
Subjt:  MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRT

Query:  LKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVD
        LKKHYWWPG+K EIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWK EHVTMDF  GLP TTNG+DGIWVIVDRLTKTARFL VKVTFTLDKLAKLYVD
Subjt:  LKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVD

Query:  KIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFHPQIDGQ
        KIVSAYGA ISIVS+RDS+FTSKFWPSLQQALGTKLHFSTAFHP+ DGQ
Subjt:  KIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFHPQIDGQ

KAA0042141.1 hypothetical protein E6C27_scaffold67G006300 [Cucumis melo var. makuwa]8.4e-10781.53Show/hide
Query:  MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRT
        MGE A+SVGKL SLVAHFQVRP LIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMK DRLCVPSDQTIKDQI EEAHSSAYAMHPGSTKVYRT
Subjt:  MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRT

Query:  LKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVD
        LKKHYWWPG+KREIADY                               EHVTMDF  GLPRTTNGNDGIWVIVDRLTKTARFLPVK+TFTLDKLAKLYVD
Subjt:  LKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVD

Query:  KIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFHPQIDGQ
        KIVSAYGAPISIV DRD +FTSKFWPSLQQALGTKLHFST FHPQ DGQ
Subjt:  KIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFHPQIDGQ

KAA0056222.1 reverse transcriptase [Cucumis melo var. makuwa]8.4e-131100Show/hide
Query:  MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRT
        MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRT
Subjt:  MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRT

Query:  LKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVD
        LKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVD
Subjt:  LKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVD

Query:  KIVSAYGAPISIVSDRDSKFTSKFWPSLQQAL
        KIVSAYGAPISIVSDRDSKFTSKFWPSLQQAL
Subjt:  KIVSAYGAPISIVSDRDSKFTSKFWPSLQQAL

TYK18080.1 hypothetical protein E5676_scaffold306G004160 [Cucumis melo var. makuwa]2.4e-10681.12Show/hide
Query:  MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRT
        MGE A+SVGKL SLVAHFQVRP LIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMK DRLCVPSDQTIKDQI EEAHSSAYAMHPGSTKVYRT
Subjt:  MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRT

Query:  LKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVD
        LKKHYWWPG+KREIADY                               EHVTMDF  GLPRTTNGNDGIWVIVDRLTKTARFLPVK+TFTLDKLAKLYVD
Subjt:  LKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVD

Query:  KIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFHPQIDGQ
        KIVSAYGAPISIV D+D +FTSKFWPSLQQALGTKLHFST FHPQ DGQ
Subjt:  KIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFHPQIDGQ

TrEMBL top hitse value%identityAlignment
A0A5A7T060 Reverse transcriptase2.4e-12388.76Show/hide
Query:  MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRT
        MGE AVSVGKL SL+AHFQV+P LIDRIIK QLDDA LRKLAE+VRQNQR NYSLRG GALMK DRLCVPSDQ IKDQILEEAHS AYA HPGSTK+YRT
Subjt:  MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRT

Query:  LKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVD
        LKKHYWWPG+K EIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWK EHVTMDF  GLP TTNG+DGIWVIVDRLTKTARFL VKVTFTLDKLAKLYVD
Subjt:  LKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVD

Query:  KIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFHPQIDGQ
        KIVSAYGA ISIVS+RDS+FTSKFWPSLQQALGTKLHFSTAFHP+ DGQ
Subjt:  KIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFHPQIDGQ

A0A5A7TKQ0 Uncharacterized protein4.1e-10781.53Show/hide
Query:  MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRT
        MGE A+SVGKL SLVAHFQVRP LIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMK DRLCVPSDQTIKDQI EEAHSSAYAMHPGSTKVYRT
Subjt:  MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRT

Query:  LKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVD
        LKKHYWWPG+KREIADY                               EHVTMDF  GLPRTTNGNDGIWVIVDRLTKTARFLPVK+TFTLDKLAKLYVD
Subjt:  LKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVD

Query:  KIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFHPQIDGQ
        KIVSAYGAPISIV DRD +FTSKFWPSLQQALGTKLHFST FHPQ DGQ
Subjt:  KIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFHPQIDGQ

A0A5A7UK27 Reverse transcriptase4.0e-131100Show/hide
Query:  MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRT
        MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRT
Subjt:  MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRT

Query:  LKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVD
        LKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVD
Subjt:  LKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVD

Query:  KIVSAYGAPISIVSDRDSKFTSKFWPSLQQAL
        KIVSAYGAPISIVSDRDSKFTSKFWPSLQQAL
Subjt:  KIVSAYGAPISIVSDRDSKFTSKFWPSLQQAL

A0A5D3D2Y2 Uncharacterized protein1.2e-10681.12Show/hide
Query:  MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRT
        MGE A+SVGKL SLVAHFQVRP LIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMK DRLCVPSDQTIKDQI EEAHSSAYAMHPGSTKVYRT
Subjt:  MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRT

Query:  LKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVD
        LKKHYWWPG+KREIADY                               EHVTMDF  GLPRTTNGNDGIWVIVDRLTKTARFLPVK+TFTLDKLAKLYVD
Subjt:  LKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVD

Query:  KIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFHPQIDGQ
        KIVSAYGAPISIV D+D +FTSKFWPSLQQALGTKLHFST FHPQ DGQ
Subjt:  KIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFHPQIDGQ

A0A5D3DES5 DNA/RNA polymerases superfamily protein1.5e-10178.31Show/hide
Query:  MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRT
        M EAAVSVGKL SL+AHFQV+P LIDRIIKAQLDDARLRKLAEEVRQNQRLNYSL+ D ALMK DRLCVPSDQTIKDQIL+EAHSSAYAMHPGSTKVY T
Subjt:  MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRT

Query:  LKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVD
        LKKHYWW G+KREIADYVAKCLICQQVKPERQRPAGLLNPLPV EWKWEH                                    VTFTLDK AKLYVD
Subjt:  LKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVD

Query:  KIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFHPQIDGQ
        KIVSAYGAP+SIVSDRDS+FTSKFWPSLQQALGTKLHFSTAFHPQ DGQ
Subjt:  KIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFHPQIDGQ

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.1e-2928.89Show/hide
Query:  DRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKC-DRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLIC
        ++++    +D +L  L     +    N  L+ DG L+   D++ +P+D  +   I+++ H     +HPG   +   + + + W GI+++I +YV  C  C
Subjt:  DRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKC-DRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLIC

Query:  QQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKF
        Q  K    +P G L P+P  E  WE ++MDF   LP  ++G + ++V+VDR +K A  +P   + T ++ A+++  ++++ +G P  I++D D  FTS+ 
Subjt:  QQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKF

Query:  WPSLQQALGTKLHFSTAFHPQIDGQ
        W          + FS  + PQ DGQ
Subjt:  WPSLQQALGTKLHFSTAFHPQIDGQ

P0CT41 Transposon Tf2-12 polyprotein1.1e-2928.89Show/hide
Query:  DRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKC-DRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLIC
        ++++    +D +L  L     +    N  L+ DG L+   D++ +P+D  +   I+++ H     +HPG   +   + + + W GI+++I +YV  C  C
Subjt:  DRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKC-DRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLIC

Query:  QQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKF
        Q  K    +P G L P+P  E  WE ++MDF   LP  ++G + ++V+VDR +K A  +P   + T ++ A+++  ++++ +G P  I++D D  FTS+ 
Subjt:  QQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKF

Query:  WPSLQQALGTKLHFSTAFHPQIDGQ
        W          + FS  + PQ DGQ
Subjt:  WPSLQQALGTKLHFSTAFHPQIDGQ

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.7e-3037.86Show/hide
Query:  EVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPV
        E+ +  R NYSL  D  +   DRL VP  Q      L   H + +  H G T     +   Y+WP ++  I  Y+  C+ CQ +K  R R  GLL PLP+
Subjt:  EVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPV

Query:  PEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFH
         E +W  ++MDF  GLP T+N  + I V+VDR +K A F+  + T    +L  L    I S +G P +I SDRD + T+  +  L + LG K   S+A H
Subjt:  PEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFH

Query:  PQIDGQ
        PQ DGQ
Subjt:  PQIDGQ

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.7e-3037.86Show/hide
Query:  EVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPV
        E+ +  R NYSL  D  +   DRL VP  Q      L   H + +  H G T     +   Y+WP ++  I  Y+  C+ CQ +K  R R  GLL PLP+
Subjt:  EVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPV

Query:  PEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFH
         E +W  ++MDF  GLP T+N  + I V+VDR +K A F+  + T    +L  L    I S +G P +I SDRD + T+  +  L + LG K   S+A H
Subjt:  PEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFH

Query:  PQIDGQ
        PQ DGQ
Subjt:  PQIDGQ

Q9UR07 Transposon Tf2-11 polyprotein1.1e-2928.89Show/hide
Query:  DRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKC-DRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLIC
        ++++    +D +L  L     +    N  L+ DG L+   D++ +P+D  +   I+++ H     +HPG   +   + + + W GI+++I +YV  C  C
Subjt:  DRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKC-DRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLIC

Query:  QQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKF
        Q  K    +P G L P+P  E  WE ++MDF   LP  ++G + ++V+VDR +K A  +P   + T ++ A+++  ++++ +G P  I++D D  FTS+ 
Subjt:  QQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKF

Query:  WPSLQQALGTKLHFSTAFHPQIDGQ
        W          + FS  + PQ DGQ
Subjt:  WPSLQQALGTKLHFSTAFHPQIDGQ

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAAGCCGCTGTGTCAGTAGGCAAGTTGGAAAGTTTAGTTGCACATTTCCAAGTGCGACCTTTTTTGATAGACCGTATTATTAAAGCCCAGCTAGATGATGCAAG
ACTGAGGAAGTTAGCAGAAGAGGTAAGACAAAACCAAAGATTGAATTATAGCTTGAGGGGTGATGGTGCCTTGATGAAATGTGATAGGTTGTGTGTACCCAGTGACCAAA
CGATAAAAGATCAAATTTTAGAGGAAGCACATAGTTCTGCATATGCAATGCATCCTGGTAGTACGAAAGTGTATAGAACTTTGAAGAAACACTATTGGTGGCCAGGTATA
AAGCGTGAGATTGCAGATTATGTGGCTAAGTGTTTGATATGTCAGCAAGTTAAACCTGAACGTCAGAGACCAGCGGGACTCCTAAATCCTCTTCCAGTACCGGAATGGAA
ATGGGAGCATGTTACCATGGACTTTCATTTGGGACTACCCCGCACAACGAATGGGAATGATGGCATTTGGGTGATAGTTGACAGACTTACGAAGACAGCAAGATTTCTAC
CAGTCAAGGTCACTTTCACTTTGGATAAGCTGGCCAAATTGTATGTTGATAAAATTGTGAGTGCGTATGGAGCCCCAATATCTATTGTGTCTGATCGAGACTCCAAGTTT
ACCTCAAAGTTTTGGCCAAGTTTACAACAAGCCTTAGGTACCAAGTTACATTTTAGTACCGCATTTCATCCTCAGATAGATGGCCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAAGCCGCTGTGTCAGTAGGCAAGTTGGAAAGTTTAGTTGCACATTTCCAAGTGCGACCTTTTTTGATAGACCGTATTATTAAAGCCCAGCTAGATGATGCAAG
ACTGAGGAAGTTAGCAGAAGAGGTAAGACAAAACCAAAGATTGAATTATAGCTTGAGGGGTGATGGTGCCTTGATGAAATGTGATAGGTTGTGTGTACCCAGTGACCAAA
CGATAAAAGATCAAATTTTAGAGGAAGCACATAGTTCTGCATATGCAATGCATCCTGGTAGTACGAAAGTGTATAGAACTTTGAAGAAACACTATTGGTGGCCAGGTATA
AAGCGTGAGATTGCAGATTATGTGGCTAAGTGTTTGATATGTCAGCAAGTTAAACCTGAACGTCAGAGACCAGCGGGACTCCTAAATCCTCTTCCAGTACCGGAATGGAA
ATGGGAGCATGTTACCATGGACTTTCATTTGGGACTACCCCGCACAACGAATGGGAATGATGGCATTTGGGTGATAGTTGACAGACTTACGAAGACAGCAAGATTTCTAC
CAGTCAAGGTCACTTTCACTTTGGATAAGCTGGCCAAATTGTATGTTGATAAAATTGTGAGTGCGTATGGAGCCCCAATATCTATTGTGTCTGATCGAGACTCCAAGTTT
ACCTCAAAGTTTTGGCCAAGTTTACAACAAGCCTTAGGTACCAAGTTACATTTTAGTACCGCATTTCATCCTCAGATAGATGGCCAGTAA
Protein sequenceShow/hide protein sequence
MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGI
KREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKF
TSKFWPSLQQALGTKLHFSTAFHPQIDGQ