; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0224351 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0224351
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr08:14334071..14334760
RNA-Seq ExpressionCmc08g0224351
SyntenyCmc08g0224351
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0043227 - membrane-bounded organelle (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033210.1 pol protein [Cucumis melo var. makuwa]7.7e-12399.55Show/hide
Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV

Query:  IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR
        IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR
Subjt:  IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR

Query:  IATPLPQLTRKGDPFVWRKARE
        IATPLPQLTRKGDPFVWRKAR+
Subjt:  IATPLPQLTRKGDPFVWRKARE

KAA0042119.1 pol protein [Cucumis melo var. makuwa]6.1e-11289.96Show/hide
Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRS YHQLRIKN D+PKTAF SRYG+ EFIVMSFGLTNAP VFMDLMNRVF+EFLDTFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV

Query:  IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR
        IVFIDDIL YSKTEAEHEEHLRMVLQTLRDNKLYAKFSK EFWL +VSFLGHVVSKA VSVDPAKIE VTSW +PSTVSEV SFLGL GYYRRFVENFSR
Subjt:  IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR

Query:  IATPLPQLTRKGDPFVWRKAREDSFQNLK
        IATPL QLTRKG PFVW KA EDSFQNLK
Subjt:  IATPLPQLTRKGDPFVWRKAREDSFQNLK

KAA0048687.1 pol protein [Cucumis melo var. makuwa]4.0e-11189.08Show/hide
Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRS YHQLRIK+ D+PKTAF SRYG+ EFIVMSFGLTNAP VFMDLMNRVF+EFLDTFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV

Query:  IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR
        IVFIDDIL YSKTEAEHEEHLRMVLQTLRDNKLYAKFSK EFWL +VSFLGHVVSKA VSVDPAKIE VT W +PSTVSEV SFLGL GYYRRFVENFSR
Subjt:  IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR

Query:  IATPLPQLTRKGDPFVWRKAREDSFQNLK
        IATPL QLTRKG PFVW KA EDSFQNLK
Subjt:  IATPLPQLTRKGDPFVWRKAREDSFQNLK

KAA0051357.1 pol protein [Cucumis melo var. makuwa]4.0e-11189.08Show/hide
Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRS Y+QLRIK+ D+PKTAF SRYG+ EFIVMSFGLTNAP VFMDLMNRVF+EFLDTFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV

Query:  IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR
        IVFIDDIL YSKTEAEHEEHLRMVLQTLRDNKLYAKFSK EFWL +VSFLGHVVSKARVSVDPAKIE VT W +PSTVSEV SFLGL GYYRRFVENFSR
Subjt:  IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR

Query:  IATPLPQLTRKGDPFVWRKAREDSFQNLK
        IATPL QLTRKG PFVW KA EDSFQNLK
Subjt:  IATPLPQLTRKGDPFVWRKAREDSFQNLK

KAA0062265.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-11189.52Show/hide
Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRS YHQLRIK+ D+PKTAF SRYG+ EFIVMSFGLTNAP VFMDLMNRVF+EFLDTFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV

Query:  IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR
        IVFIDDIL YSKTEAEHEEHLRMVLQTLRDNKLYAKFSK EFWL +VSFLGHVVSKA VSVDPAKIE VT W QPSTVSEV SFLGL GYYRRFVENFSR
Subjt:  IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR

Query:  IATPLPQLTRKGDPFVWRKAREDSFQNLK
        IATPL QLTRKG PFVW KA EDSFQNLK
Subjt:  IATPLPQLTRKGDPFVWRKAREDSFQNLK

TrEMBL top hitse value%identityAlignment
A0A5A7TLA3 Pol protein3.0e-11289.96Show/hide
Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRS YHQLRIKN D+PKTAF SRYG+ EFIVMSFGLTNAP VFMDLMNRVF+EFLDTFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV

Query:  IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR
        IVFIDDIL YSKTEAEHEEHLRMVLQTLRDNKLYAKFSK EFWL +VSFLGHVVSKA VSVDPAKIE VTSW +PSTVSEV SFLGL GYYRRFVENFSR
Subjt:  IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR

Query:  IATPLPQLTRKGDPFVWRKAREDSFQNLK
        IATPL QLTRKG PFVW KA EDSFQNLK
Subjt:  IATPLPQLTRKGDPFVWRKAREDSFQNLK

A0A5A7U330 Reverse transcriptase1.9e-11189.08Show/hide
Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRS YHQLRIK+ D+PKTAF SRYG+ EFIVMSFGLTNAP VFMDLMNRVF+EFLDTFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV

Query:  IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR
        IVFIDDIL YSKTEAEHEEHLRMVLQTLRDNKLYAKFSK EFWL +VSFLGHVVSKA VSVDPAKIE VT W +PSTVSEV SFLGL GYYRRFVENFSR
Subjt:  IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR

Query:  IATPLPQLTRKGDPFVWRKAREDSFQNLK
        IATPL QLTRKG PFVW KA EDSFQNLK
Subjt:  IATPLPQLTRKGDPFVWRKAREDSFQNLK

A0A5A7UAA8 Reverse transcriptase1.9e-11189.08Show/hide
Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRS Y+QLRIK+ D+PKTAF SRYG+ EFIVMSFGLTNAP VFMDLMNRVF+EFLDTFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV

Query:  IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR
        IVFIDDIL YSKTEAEHEEHLRMVLQTLRDNKLYAKFSK EFWL +VSFLGHVVSKARVSVDPAKIE VT W +PSTVSEV SFLGL GYYRRFVENFSR
Subjt:  IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR

Query:  IATPLPQLTRKGDPFVWRKAREDSFQNLK
        IATPL QLTRKG PFVW KA EDSFQNLK
Subjt:  IATPLPQLTRKGDPFVWRKAREDSFQNLK

A0A5A7V8N8 Ty3-gypsy retrotransposon protein6.6e-11289.52Show/hide
Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRS YHQLRIK+ D+PKTAF SRYG+ EFIVMSFGLTNAP VFMDLMNRVF+EFLDTFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV

Query:  IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR
        IVFIDDIL YSKTEAEHEEHLRMVLQTLRDNKLYAKFSK EFWL +VSFLGHVVSKA VSVDPAKIE VT W QPSTVSEV SFLGL GYYRRFVENFSR
Subjt:  IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR

Query:  IATPLPQLTRKGDPFVWRKAREDSFQNLK
        IATPL QLTRKG PFVW KA EDSFQNLK
Subjt:  IATPLPQLTRKGDPFVWRKAREDSFQNLK

A0A5D3C850 Pol protein3.7e-12399.55Show/hide
Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV

Query:  IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR
        IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR
Subjt:  IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR

Query:  IATPLPQLTRKGDPFVWRKARE
        IATPLPQLTRKGDPFVWRKAR+
Subjt:  IATPLPQLTRKGDPFVWRKARE

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.62.4e-4236.68Show/hide
Query:  RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVI
        R+ IDYR+LN++TV +R+P+P +D++  +L     F+ IDL   +HQ+ +    + KTAF +++G+ E++ M FGL NAP  F   MN + +  L+   +
Subjt:  RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVI

Query:  VFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSRI
        V++DDI+ +S +  EH + L +V + L    L  +  K EF   E +FLGHV++   +  +P KIE +  +P P+   E+ +FLGL GYYR+F+ NF+ I
Subjt:  VFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSRI

Query:  ATPLPQLTRKGDPFVWRKAREDS-FQNLK
        A P+ +  +K           DS F+ LK
Subjt:  ATPLPQLTRKGDPFVWRKAREDS-FQNLK

P0CT41 Transposon Tf2-12 polyprotein6.9e-4236.24Show/hide
Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV
        +R+ +DY+ LNK    N YPLP I+ L  ++QG+TIF+K+DL+S YH +R++  D  K AF    G  E++VM +G++ AP  F   +N +  E  ++ V
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFV

Query:  IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR
        + ++DDIL +SK+E+EH +H++ VLQ L++  L    +K EF   +V F+G+ +S+   +     I+ V  W QP    E+  FLG V Y R+F+   S+
Subjt:  IVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSR

Query:  IATPLPQLTRKGDPFVWRKAREDSFQNLK
        +  PL  L +K   + W   +  + +N+K
Subjt:  IATPLPQLTRKGDPFVWRKAREDSFQNLK

P20825 Retrovirus-related Pol polyprotein from transposon 2974.8e-4335.37Show/hide
Query:  RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVI
        R+ IDYR+LN++T+ +RYP+P +D++  +L     F+ IDL   +HQ+ +    + KTAF ++ G+ E++ M FGL NAP  F   MN + +  L+   +
Subjt:  RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVI

Query:  VFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSRI
        V++DDI+ +S +  EH   +++V   L D  L  +  K EF   E +FLGH+V+   +  +P K++ + S+P P+   E+ +FLGL GYYR+F+ N++ I
Subjt:  VFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSRI

Query:  ATPLPQLTRKGDPFVWRKARE-DSFQNLK
        A P+    +K      +K    ++F+ LK
Subjt:  ATPLPQLTRKGDPFVWRKARE-DSFQNLK

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.1e-4239.04Show/hide
Query:  RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVI
        RLC+DYR LNK T+ + +PLPRID+L  ++  A IF+ +DL S YHQ+ ++ +D  KTAF +  G  E+ VM FGL NAP+ F   M   F++    FV 
Subjt:  RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVI

Query:  VFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSRI
        V++DDIL +S++  EH +HL  VL+ L++  L  K  K +F   E  FLG+ +   +++    K   +  +P P TV +   FLG++ YYRRF+ N S+I
Subjt:  VFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSRI

Query:  ATPLPQLTRKGDPFVWRKAREDSFQNLK
        A P+       D   W + ++ + + LK
Subjt:  ATPLPQLTRKGDPFVWRKAREDSFQNLK

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.8e-4239.04Show/hide
Query:  RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVI
        RLC+DYR LNK T+ + +PLPRID+L  ++  A IF+ +DL S YHQ+ ++ +D  KTAF +  G  E+ VM FGL NAP+ F   M   F++    FV 
Subjt:  RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVI

Query:  VFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSRI
        V++DDIL +S++  EH +HL  VL+ L++  L  K  K +F   E  FLG+ +   +++    K   +  +P P TV +   FLG++ YYRRF+ N S+I
Subjt:  VFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSRI

Query:  ATPLPQLTRKGDPFVWRKAREDSFQNLK
        A P+       D   W + ++ +   LK
Subjt:  ATPLPQLTRKGDPFVWRKAREDSFQNLK

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein5.9e-2041.07Show/hide
Query:  HLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLG--HVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVW
        HL MVLQ    ++ YA   K  F   ++++LG  H++S   VS DPAK+E +  WP+P   +E+  FLGL GYYRRFV+N+ +I  PL +L +K +   W
Subjt:  HLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLG--HVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVW

Query:  RKAREDSFQNLK
         +    +F+ LK
Subjt:  RKAREDSFQNLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCCTATGTATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCTACAATATT
CTCTAAGATCGACCTTCGGTCGAGATATCATCAGCTGAGGATTAAGAATAGGGATTTACCGAAGACAGCCTTTTATTCCAGATATGGATATAATGAGTTTATTGTGATGT
CTTTTGGTTTGACGAATGCTCCGACAGTGTTTATGGATTTGATGAACAGAGTGTTTAAGGAGTTCCTGGACACTTTTGTGATCGTGTTTATTGATGATATTTTGACATAT
TCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTACAAACCCTTAGAGACAATAAATTGTATGCAAAGTTCTCGAAATCTGAGTTTTGGTTGATGGAGGT
ATCCTTTCTAGGCCATGTGGTTTCTAAGGCTAGAGTTTCTGTGGATCCAGCTAAGATAGAGGGAGTCACCAGTTGGCCCCAACCTTCCACGGTCAGTGAGGTTCATAGCT
TTCTTGGTTTAGTAGGTTATTATCGACGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTCCTCAGTTGACCAGGAAGGGAGATCCTTTTGTTTGGAGAAAGGCA
CGTGAGGACAGTTTCCAGAACCTTAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCGCCTATGTATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCTACAATATT
CTCTAAGATCGACCTTCGGTCGAGATATCATCAGCTGAGGATTAAGAATAGGGATTTACCGAAGACAGCCTTTTATTCCAGATATGGATATAATGAGTTTATTGTGATGT
CTTTTGGTTTGACGAATGCTCCGACAGTGTTTATGGATTTGATGAACAGAGTGTTTAAGGAGTTCCTGGACACTTTTGTGATCGTGTTTATTGATGATATTTTGACATAT
TCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTACAAACCCTTAGAGACAATAAATTGTATGCAAAGTTCTCGAAATCTGAGTTTTGGTTGATGGAGGT
ATCCTTTCTAGGCCATGTGGTTTCTAAGGCTAGAGTTTCTGTGGATCCAGCTAAGATAGAGGGAGTCACCAGTTGGCCCCAACCTTCCACGGTCAGTGAGGTTCATAGCT
TTCTTGGTTTAGTAGGTTATTATCGACGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTCCTCAGTTGACCAGGAAGGGAGATCCTTTTGTTTGGAGAAAGGCA
CGTGAGGACAGTTTCCAGAACCTTAAATAG
Protein sequenceShow/hide protein sequence
MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFIDDILTY
SKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVWRKA
REDSFQNLK