; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0224531 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0224531
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr08:14767581..14768414
RNA-Seq ExpressionCmc08g0224531
SyntenyCmc08g0224531
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035204.1 reverse transcriptase [Cucumis melo var. makuwa]3.6e-14391.34Show/hide
Query:  MRQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVET
        MRQRRWLELVKDYDCEILYHP KANVVADALSRKVAHSAALITKQ PLLRDF+RA+IAVS+GEVT+QLAQLS+QPTLRQ+IIV QL+DPYLVEK R+VET
Subjt:  MRQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVET

Query:  AQGEVFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGWK
         QGE FSISSDDGLMFEGRLCVPEDS VKTELL+EAHSSPFTMHPGSTKMYQDLR VYWWRNMKREVADF+SRCLVCQQ KAPRQRPAGLLQPLSV GWK
Subjt:  AQGEVFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGWK

Query:  WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSKF
        WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFV GKSTYTASKWGQLYM EIVRLHGVPVSI+SDRD RFTSKF
Subjt:  WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSKF

KAA0041490.1 hypothetical protein E6C27_scaffold6G00780 [Cucumis melo var. makuwa]7.3e-14492.78Show/hide
Query:  MRQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVET
        MR RRWLELVKDYDCEILYHP KANVVADALSRKVAHSAALITKQ PLLRDF+RA+IAVS+GEVTSQLAQLS+QPTLRQRIIV QL DPYLVEK RLVET
Subjt:  MRQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVET

Query:  AQGEVFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGWK
         QGE FSIS DDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLR VYWWRNMKREVADFVSRCLVCQQ KAPRQRPAGLLQPLSV GWK
Subjt:  AQGEVFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGWK

Query:  WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSKF
        WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFV GKSTYTASKWGQLYM EIVRLHGVPVSI+SDRD RFTSKF
Subjt:  WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSKF

KAA0053208.1 pol protein [Cucumis melo var. makuwa]2.5e-14492.78Show/hide
Query:  MRQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVET
        MRQRRWLELVKDYDCEILYHP KANVVADALSRKVAHSAALITK  PLLRDF+RA+IAVS+GEVTSQLAQLS+Q TLRQRIIV QLKDPYLVEK RLVET
Subjt:  MRQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVET

Query:  AQGEVFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGWK
         QGEVF ISSD+ LMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQ K PRQRPAGLLQPLSVLGWK
Subjt:  AQGEVFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGWK

Query:  WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSKF
        WES+SMDFITGLPKTLKGYTVIWVVVDRLTKSAHFV GKSTYTASKWGQLYM EIVRLHG+PVSIVSDRDARFTSKF
Subjt:  WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSKF

TYK00135.1 pol protein [Cucumis melo var. makuwa]2.5e-14492.78Show/hide
Query:  MRQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVET
        MRQRRWLELVKDYDCEILYHP KANVVADALSRKVAHSAALITK  PLLRDF+RA+IAVS+GEVTSQLAQLS+Q TLRQRIIV QLKDPYLVEK RLVET
Subjt:  MRQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVET

Query:  AQGEVFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGWK
         QGEVF ISSD+ LMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQ K PRQRPAGLLQPLSVLGWK
Subjt:  AQGEVFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGWK

Query:  WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSKF
        WES+SMDFITGLPKTLKGYTVIWVVVDRLTKSAHFV GKSTYTASKWGQLYM EIVRLHG+PVSIVSDRDARFTSKF
Subjt:  WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSKF

TYK24364.1 putative polyprotein [Cucumis melo var. makuwa]7.3e-14492.78Show/hide
Query:  MRQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVET
        MR RRWLELVKDYDCEILYHP KANVVADALSRKVAHSAALITKQ PLLRDF+RA+IAVS+GEVTSQLAQLS+QPTLRQRIIV QL DPYLVEK RLVET
Subjt:  MRQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVET

Query:  AQGEVFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGWK
         QGE FSIS DDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLR VYWWRNMKREVADFVSRCLVCQQ KAPRQRPAGLLQPLSV GWK
Subjt:  AQGEVFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGWK

Query:  WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSKF
        WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFV GKSTYTASKWGQLYM EIVRLHGVPVSI+SDRD RFTSKF
Subjt:  WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSKF

TrEMBL top hitse value%identityAlignment
A0A5A7SVA8 Reverse transcriptase1.8e-14391.34Show/hide
Query:  MRQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVET
        MRQRRWLELVKDYDCEILYHP KANVVADALSRKVAHSAALITKQ PLLRDF+RA+IAVS+GEVT+QLAQLS+QPTLRQ+IIV QL+DPYLVEK R+VET
Subjt:  MRQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVET

Query:  AQGEVFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGWK
         QGE FSISSDDGLMFEGRLCVPEDS VKTELL+EAHSSPFTMHPGSTKMYQDLR VYWWRNMKREVADF+SRCLVCQQ KAPRQRPAGLLQPLSV GWK
Subjt:  AQGEVFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGWK

Query:  WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSKF
        WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFV GKSTYTASKWGQLYM EIVRLHGVPVSI+SDRD RFTSKF
Subjt:  WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSKF

A0A5A7TDX1 Reverse transcriptase3.5e-14492.78Show/hide
Query:  MRQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVET
        MR RRWLELVKDYDCEILYHP KANVVADALSRKVAHSAALITKQ PLLRDF+RA+IAVS+GEVTSQLAQLS+QPTLRQRIIV QL DPYLVEK RLVET
Subjt:  MRQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVET

Query:  AQGEVFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGWK
         QGE FSIS DDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLR VYWWRNMKREVADFVSRCLVCQQ KAPRQRPAGLLQPLSV GWK
Subjt:  AQGEVFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGWK

Query:  WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSKF
        WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFV GKSTYTASKWGQLYM EIVRLHGVPVSI+SDRD RFTSKF
Subjt:  WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSKF

A0A5A7UDI5 Pol protein1.2e-14492.78Show/hide
Query:  MRQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVET
        MRQRRWLELVKDYDCEILYHP KANVVADALSRKVAHSAALITK  PLLRDF+RA+IAVS+GEVTSQLAQLS+Q TLRQRIIV QLKDPYLVEK RLVET
Subjt:  MRQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVET

Query:  AQGEVFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGWK
         QGEVF ISSD+ LMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQ K PRQRPAGLLQPLSVLGWK
Subjt:  AQGEVFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGWK

Query:  WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSKF
        WES+SMDFITGLPKTLKGYTVIWVVVDRLTKSAHFV GKSTYTASKWGQLYM EIVRLHG+PVSIVSDRDARFTSKF
Subjt:  WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSKF

A0A5D3BM42 Pol protein1.2e-14492.78Show/hide
Query:  MRQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVET
        MRQRRWLELVKDYDCEILYHP KANVVADALSRKVAHSAALITK  PLLRDF+RA+IAVS+GEVTSQLAQLS+Q TLRQRIIV QLKDPYLVEK RLVET
Subjt:  MRQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVET

Query:  AQGEVFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGWK
         QGEVF ISSD+ LMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQ K PRQRPAGLLQPLSVLGWK
Subjt:  AQGEVFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGWK

Query:  WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSKF
        WES+SMDFITGLPKTLKGYTVIWVVVDRLTKSAHFV GKSTYTASKWGQLYM EIVRLHG+PVSIVSDRDARFTSKF
Subjt:  WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSKF

A0A5D3DL91 Reverse transcriptase3.5e-14492.78Show/hide
Query:  MRQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVET
        MR RRWLELVKDYDCEILYHP KANVVADALSRKVAHSAALITKQ PLLRDF+RA+IAVS+GEVTSQLAQLS+QPTLRQRIIV QL DPYLVEK RLVET
Subjt:  MRQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVET

Query:  AQGEVFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGWK
         QGE FSIS DDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLR VYWWRNMKREVADFVSRCLVCQQ KAPRQRPAGLLQPLSV GWK
Subjt:  AQGEVFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGWK

Query:  WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSKF
        WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFV GKSTYTASKWGQLYM EIVRLHGVPVSI+SDRD RFTSKF
Subjt:  WESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSKF

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.2e-2727.44Show/hide
Query:  RQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVETA
        R  RW   ++D++ EI Y P  AN +ADALSR       ++ +  P+ +D +   I        + + Q+S+    + +++     D  L+      +  
Subjt:  RQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVETA

Query:  QGEVFSISSDDGLMFEGR--LCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGW
          E  +I   DGL+   +  + +P D+ +   ++ + H     +HPG   +   +   + W+ +++++ ++V  C  CQ  K+   +P G LQP+     
Subjt:  QGEVFSISSDDGLMFEGR--LCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGW

Query:  KWESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSK
         WES+SMDFIT LP++  GY  ++VVVDR +K A  V    + TA +  +++   ++   G P  I++D D  FTS+
Subjt:  KWESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSK

P0CT35 Transposon Tf2-2 polyprotein1.2e-2727.44Show/hide
Query:  RQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVETA
        R  RW   ++D++ EI Y P  AN +ADALSR       ++ +  P+ +D +   I        + + Q+S+    + +++     D  L+      +  
Subjt:  RQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVETA

Query:  QGEVFSISSDDGLMFEGR--LCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGW
          E  +I   DGL+   +  + +P D+ +   ++ + H     +HPG   +   +   + W+ +++++ ++V  C  CQ  K+   +P G LQP+     
Subjt:  QGEVFSISSDDGLMFEGR--LCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGW

Query:  KWESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSK
         WES+SMDFIT LP++  GY  ++VVVDR +K A  V    + TA +  +++   ++   G P  I++D D  FTS+
Subjt:  KWESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSK

P0CT36 Transposon Tf2-3 polyprotein1.2e-2727.44Show/hide
Query:  RQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVETA
        R  RW   ++D++ EI Y P  AN +ADALSR       ++ +  P+ +D +   I        + + Q+S+    + +++     D  L+      +  
Subjt:  RQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVETA

Query:  QGEVFSISSDDGLMFEGR--LCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGW
          E  +I   DGL+   +  + +P D+ +   ++ + H     +HPG   +   +   + W+ +++++ ++V  C  CQ  K+   +P G LQP+     
Subjt:  QGEVFSISSDDGLMFEGR--LCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGW

Query:  KWESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSK
         WES+SMDFIT LP++  GY  ++VVVDR +K A  V    + TA +  +++   ++   G P  I++D D  FTS+
Subjt:  KWESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSK

P0CT41 Transposon Tf2-12 polyprotein1.2e-2727.44Show/hide
Query:  RQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVETA
        R  RW   ++D++ EI Y P  AN +ADALSR       ++ +  P+ +D +   I        + + Q+S+    + +++     D  L+      +  
Subjt:  RQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVETA

Query:  QGEVFSISSDDGLMFEGR--LCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGW
          E  +I   DGL+   +  + +P D+ +   ++ + H     +HPG   +   +   + W+ +++++ ++V  C  CQ  K+   +P G LQP+     
Subjt:  QGEVFSISSDDGLMFEGR--LCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGW

Query:  KWESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSK
         WES+SMDFIT LP++  GY  ++VVVDR +K A  V    + TA +  +++   ++   G P  I++D D  FTS+
Subjt:  KWESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSK

Q9UR07 Transposon Tf2-11 polyprotein1.2e-2727.44Show/hide
Query:  RQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVETA
        R  RW   ++D++ EI Y P  AN +ADALSR       ++ +  P+ +D +   I        + + Q+S+    + +++     D  L+      +  
Subjt:  RQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVETA

Query:  QGEVFSISSDDGLMFEGR--LCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGW
          E  +I   DGL+   +  + +P D+ +   ++ + H     +HPG   +   +   + W+ +++++ ++V  C  CQ  K+   +P G LQP+     
Subjt:  QGEVFSISSDDGLMFEGR--LCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGW

Query:  KWESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSK
         WES+SMDFIT LP++  GY  ++VVVDR +K A  V    + TA +  +++   ++   G P  I++D D  FTS+
Subjt:  KWESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACAGAGAAGATGGCTTGAGTTGGTGAAGGATTATGACTGCGAGATTCTGTACCACCCAAGTAAGGCAAATGTAGTAGCTGATGCGTTGAGCAGGAAGGTTGCACA
TTCAGCAGCGCTTATCACAAAGCAGGTCCCCTTACTCAGAGATTTCAAGAGAGCTCAGATTGCAGTCTCAATAGGGGAAGTTACTTCACAGCTGGCTCAGTTGTCAATGC
AGCCGACCTTGCGACAGAGGATTATTGTCACTCAGTTAAAGGATCCTTATCTGGTCGAGAAGCATCGTTTGGTAGAGACAGCGCAAGGTGAGGTTTTCTCCATATCCTCT
GACGACGGCCTTATGTTTGAGGGACGTTTGTGTGTGCCGGAAGACAGTGCAGTCAAGACAGAGCTTTTGACTGAGGCTCACAGTTCTCCATTTACTATGCACCCCGGAAG
TACGAAGATGTACCAAGACTTGAGGTGTGTCTATTGGTGGAGGAACATGAAGAGAGAAGTGGCAGACTTTGTCAGTAGATGTTTGGTGTGCCAGCAGGAGAAGGCACCTA
GACAGAGGCCAGCAGGGCTGTTGCAACCCTTGAGTGTGCTAGGATGGAAATGGGAGAGCGTGTCAATGGACTTCATTACAGGACTGCCTAAGACTCTAAAGGGATATACA
GTGATCTGGGTTGTCGTCGACAGACTCACGAAGTCAGCCCACTTTGTTCTAGGGAAATCCACTTATACTGCCAGTAAGTGGGGACAGTTATATATGATGGAGATAGTGAG
ACTGCATGGAGTACCTGTATCCATCGTTTCGGACAGAGATGCTCGTTTCACATCGAAGTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGACAGAGAAGATGGCTTGAGTTGGTGAAGGATTATGACTGCGAGATTCTGTACCACCCAAGTAAGGCAAATGTAGTAGCTGATGCGTTGAGCAGGAAGGTTGCACA
TTCAGCAGCGCTTATCACAAAGCAGGTCCCCTTACTCAGAGATTTCAAGAGAGCTCAGATTGCAGTCTCAATAGGGGAAGTTACTTCACAGCTGGCTCAGTTGTCAATGC
AGCCGACCTTGCGACAGAGGATTATTGTCACTCAGTTAAAGGATCCTTATCTGGTCGAGAAGCATCGTTTGGTAGAGACAGCGCAAGGTGAGGTTTTCTCCATATCCTCT
GACGACGGCCTTATGTTTGAGGGACGTTTGTGTGTGCCGGAAGACAGTGCAGTCAAGACAGAGCTTTTGACTGAGGCTCACAGTTCTCCATTTACTATGCACCCCGGAAG
TACGAAGATGTACCAAGACTTGAGGTGTGTCTATTGGTGGAGGAACATGAAGAGAGAAGTGGCAGACTTTGTCAGTAGATGTTTGGTGTGCCAGCAGGAGAAGGCACCTA
GACAGAGGCCAGCAGGGCTGTTGCAACCCTTGAGTGTGCTAGGATGGAAATGGGAGAGCGTGTCAATGGACTTCATTACAGGACTGCCTAAGACTCTAAAGGGATATACA
GTGATCTGGGTTGTCGTCGACAGACTCACGAAGTCAGCCCACTTTGTTCTAGGGAAATCCACTTATACTGCCAGTAAGTGGGGACAGTTATATATGATGGAGATAGTGAG
ACTGCATGGAGTACCTGTATCCATCGTTTCGGACAGAGATGCTCGTTTCACATCGAAGTTCTAG
Protein sequenceShow/hide protein sequence
MRQRRWLELVKDYDCEILYHPSKANVVADALSRKVAHSAALITKQVPLLRDFKRAQIAVSIGEVTSQLAQLSMQPTLRQRIIVTQLKDPYLVEKHRLVETAQGEVFSISS
DDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQEKAPRQRPAGLLQPLSVLGWKWESVSMDFITGLPKTLKGYT
VIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMMEIVRLHGVPVSIVSDRDARFTSKF