CuGenDBv2

Gene ID	Cmc08g0224541
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr08:14768522..14769181
RNA-Seq Expression	Cmc08g0224541
Synteny	Cmc08g0224541
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040542.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

1.8e-105

90.83

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Query:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW
        MSFGLTN  AVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLH+VLETLR+NKLYAKFSKCEFWL+KVTFL HVVSSEGVSVDPAKIEAVT+W
Subjt:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW

Query:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAYA
        PR STVSEI SFLGLAGYYR FVEDFSR ASPLTQLTRKGTPFV SPACESSFQELKQKLV+ PVLT+ DGSR+FVIYSDASKKGLGCVLMQQG+VVAYA
Subjt:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAYA

Query:  SRQLKSHEQNYPTHDLEL
        SRQLK HEQNYPTHDLEL
Subjt:  SRQLKSHEQNYPTHDLEL

KAA0053210.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.6e-117

100

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Query:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW
        MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW
Subjt:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW

Query:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAYA
        PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAYA
Subjt:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAYA

Query:  SRQLKSHEQNYPTHDLELE
        SRQLKSHEQNYPTHDLELE
Subjt:  SRQLKSHEQNYPTHDLELE

KAA0063946.1 pol protein [Cucumis melo var. makuwa]

1.6e-106

92.2

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Query:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW
        MSFGLTNA AVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLH+VLETLR+NKLYAKFSKCEFWL+KVTFL HVVSSEGVSVDPAKIEAVT+W
Subjt:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW

Query:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAYA
        PR STVSEI SFLGLAGYYR FVEDFSR ASPLTQLTRKGTPFV SPACESSFQELKQKLV+ PVLTV DGS SFVIYSDASKKGLGCVLMQQG+VVAYA
Subjt:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAYA

Query:  SRQLKSHEQNYPTHDLEL
        SRQLKSHEQNYPTHDLEL
Subjt:  SRQLKSHEQNYPTHDLEL

KAA0066951.1 pol protein [Cucumis melo var. makuwa]

1.8e-105

91.28

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Query:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW
        MSFGLTNA AVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLH+VLETLR+NKLYAKFSKCEFWL+KVTFL HVVSSEGVSVDPAKIEAVT+W
Subjt:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW

Query:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAYA
        PR STVSEI SFLGLAGYYR FVEDFSR ASPLTQLTRKGTPFV SPACESSFQELKQKLV+ PVLTV DGS +FVIYSDASKKGLGCVLMQQG+VVAYA
Subjt:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAYA

Query:  SRQLKSHEQNYPTHDLEL
        SRQLK HEQNYPTHDLEL
Subjt:  SRQLKSHEQNYPTHDLEL

TYK05193.1 pol protein [Cucumis melo var. makuwa]

1.1e-105

91.28

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Query:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW
        MSFGLTNA AVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLH+VLETLR+NKLYAKFSKCEFWL+KVTFL HVVSSEGVSVDP KIEAVT+W
Subjt:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW

Query:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAYA
        PR STVSEI SFLGLAGYYR FVEDFSR ASPLTQLTRKGTPFV SPACESSFQELKQKLV+ PVLTV DGS +FVIYSDASKKGLGCVLMQQG+VVAYA
Subjt:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAYA

Query:  SRQLKSHEQNYPTHDLEL
        SRQLKSHEQNYPTHDLEL
Subjt:  SRQLKSHEQNYPTHDLEL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UDC5 Ty3-gypsy retrotransposon protein

7.7e-118

100

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Query:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW
        MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW
Subjt:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW

Query:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAYA
        PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAYA
Subjt:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAYA

Query:  SRQLKSHEQNYPTHDLELE
        SRQLKSHEQNYPTHDLELE
Subjt:  SRQLKSHEQNYPTHDLELE

A0A5A7UHL7 Reverse transcriptase

8.8e-106

91.28

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Query:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW
        MSFGLTNA AVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLH+VLETLR+NKLYAKFSKCEFWL+KVTFL HVVSSEGVSVDPAKIEAVT+W
Subjt:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW

Query:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAYA
        PR STVSEI SFLGLAGYYR FVEDFSR ASPLTQLTRKGTPFV SPACESSFQELKQKLV+ PVLTV DGS +FVIYSDASKKGLGCVLMQQG+VVAYA
Subjt:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAYA

Query:  SRQLKSHEQNYPTHDLEL
        SRQLK HEQNYPTHDLEL
Subjt:  SRQLKSHEQNYPTHDLEL

A0A5A7VBY3 Reverse transcriptase

8.0e-107

92.2

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Query:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW
        MSFGLTNA AVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLH+VLETLR+NKLYAKFSKCEFWL+KVTFL HVVSSEGVSVDPAKIEAVT+W
Subjt:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW

Query:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAYA
        PR STVSEI SFLGLAGYYR FVEDFSR ASPLTQLTRKGTPFV SPACESSFQELKQKLV+ PVLTV DGS SFVIYSDASKKGLGCVLMQQG+VVAYA
Subjt:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAYA

Query:  SRQLKSHEQNYPTHDLEL
        SRQLKSHEQNYPTHDLEL
Subjt:  SRQLKSHEQNYPTHDLEL

A0A5A7VMR4 Reverse transcriptase

8.8e-106

91.28

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Query:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW
        MSFGLTNA AVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLH+VLETLR+NKLYAKFSKCEFWL+KVTFL HVVSSEGVSVDPAKIEAVT+W
Subjt:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW

Query:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAYA
        PR STVSEI SFLGLAGYYR FVEDFSR ASPLTQLTRKGTPFV SPACESSFQELKQKLV+ PVLTV DGS +FVIYSDASKKGLGCVLMQQG+VVAYA
Subjt:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAYA

Query:  SRQLKSHEQNYPTHDLEL
        SRQLK HEQNYPTHDLEL
Subjt:  SRQLKSHEQNYPTHDLEL

A0A5D3BZN1 Reverse transcriptase

5.2e-106

91.28

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Query:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW
        MSFGLTNA AVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLH+VLETLR+NKLYAKFSKCEFWL+KVTFL HVVSSEGVSVDP KIEAVT+W
Subjt:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW

Query:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAYA
        PR STVSEI SFLGLAGYYR FVEDFSR ASPLTQLTRKGTPFV SPACESSFQELKQKLV+ PVLTV DGS +FVIYSDASKKGLGCVLMQQG+VVAYA
Subjt:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAYA

Query:  SRQLKSHEQNYPTHDLEL
        SRQLKSHEQNYPTHDLEL
Subjt:  SRQLKSHEQNYPTHDLEL

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

3.4e-38

38.81

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Query:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW
        M FGL NA A F   MN + +  L+   +V++DDI+++S +  EH + L  V E L    L  +  KCEF  ++ TFL HV++ +G+  +P KIEA+  +
Subjt:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW

Query:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPF-VSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAY
        P  +   EI +FLGL GYYR F+ +F+  A P+T+  +K      ++P  +S+F++LK  +   P+L V D ++ F + +DAS   LG VL Q G  ++Y
Subjt:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPF-VSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAY

Query:  ASRQLKSHEQNYPTHDLEL
         SR L  HE NY T + EL
Subjt:  ASRQLKSHEQNYPTHDLEL

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

1.3e-32

33.91

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Query:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW
        + FGL NA ++F   ++ V ++ +     V++DD++I+S+ E++H  H+  VL+ L    +     K  F+ + V +L  +VS +G   DP K++A+  +
Subjt:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW

Query:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTR-----------KGTPFVSSPACESSFQELKQKLVSVPV-LTVLDGSRSFVIYSDASKKGLGC
        P    V ++ SFLGLA YYR F++DF+  A P+T + +           K  P   +    ++FQ L+  L S  V L   D  + F + +DAS  G+G 
Subjt:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTR-----------KGTPFVSSPACESSFQELKQKLVSVPV-LTVLDGSRSFVIYSDASKKGLGC

Query:  VLMQQGRVVAYASRQLKSHEQNYPTHDLEL
        VL Q+GR +   SR LK  EQNY T++ EL
Subjt:  VLMQQGRVVAYASRQLKSHEQNYPTHDLEL

P20825 Retrovirus-related Pol polyprotein from transposon 297

9.3e-36

36.36

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Query:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW
        M FGL NA A F   MN + +  L+   +V++DDI+I+S +  EH   +  V   L    L  +  KCEF  K+  FL H+V+ +G+  +P K++A+ S+
Subjt:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW

Query:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACE--SSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVA
        P  +   EI +FLGL GYYR F+ +++  A P+T   +K T  + +   E   +F++LK  ++  P+L + D  + FV+ +DAS   LG VL Q G  ++
Subjt:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACE--SSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVA

Query:  YASRQLKSHEQNYPTHDLEL
        + SR L  HE NY   + EL
Subjt:  YASRQLKSHEQNYPTHDLEL

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

2.1e-27

33.48

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Query:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW
        M FGL NA + F   M   F+D    FV V++DDILI+S++  EH +HL  VLE L++  L  K  KC+F  ++  FL + +  + ++    K  A+  +
Subjt:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW

Query:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGR-----
        P   TV +   FLG+  YYR F+ + S+ A P+       + +      + + ++LK  L + PVL   +   ++ + +DASK G+G VL +        
Subjt:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGR-----

Query:  -VVAYASRQLKSHEQNYPTHDLEL
         VV Y S+ L+S ++NYP  +LEL
Subjt:  -VVAYASRQLKSHEQNYPTHDLEL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

4.5e-30

32.19

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Query:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW
        + FGL NA A+F  +++ + ++ +     V+IDDI+++S+    H ++L  VL +L    L     K  F   +V FL ++V+++G+  DP K+ A++  
Subjt:  MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSW

Query:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTR-----------KGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCV
        P  ++V E+  FLG+  YYR F++D+++ A PLT LTR              P         SF +LK  L S  +L     ++ F + +DAS   +G V
Subjt:  PRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTR-----------KGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCV

Query:  LMQ----QGRVVAYASRQLKSHEQNYPTHDLEL
        L Q    + R +AY SR L   E+NY T + E+
Subjt:  LMQ----QGRVVAYASRQLKSHEQNYPTHDLEL

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

5.6e-20

38.17

Show/hide

Query:  HLHKVLETLRSNKLYAKFSKCEFWLKKVTFLD--HVVSSEGVSVDPAKIEAVTSWPRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVS
        HL  VL+    ++ YA   KC F   ++ +L   H++S EGVS DPAK+EA+  WP     +E+  FLGL GYYR FV+++ +   PLT+L +K +   +
Subjt:  HLHKVLETLRSNKLYAKFSKCEFWLKKVTFLD--HVVSSEGVSVDPAKIEAVTSWPRLSTVSEIHSFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVS

Query:  SPACESSFQELKQKLVSVPVLTVLDGSRSFV
          A   +F+ LK  + ++PVL + D    FV
Subjt:  SPACESSFQELKQKLVSVPVLTVLDGSRSFV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCTTTTGGGTTGACTAATGCTCATGCAGTATTCATGGACTTGATGAACAGGGTATTTAAGGATTTCTTAGACACGTTTGTCATAGTTTTCATTGACGACATTTTGAT
TTACTCCAAGACTGAGGCTGAGCATGAGGAGCATTTGCACAAGGTTTTGGAGACTCTTCGATCCAATAAGTTGTATGCCAAGTTCTCGAAGTGTGAGTTCTGGCTGAAGA
AGGTGACTTTCCTCGACCACGTGGTTTCCAGTGAGGGAGTTTCTGTGGACCCAGCAAAGATTGAAGCGGTTACCAGTTGGCCTCGACTGTCTACAGTTAGCGAGATTCAT
AGTTTCCTGGGTTTGGCAGGTTACTACAGGAGCTTCGTGGAAGACTTCTCTCGTACAGCCAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCTTTTGTTTCGAGCCC
AGCTTGCGAGAGTAGCTTCCAGGAGCTTAAGCAAAAGCTTGTGTCTGTACCAGTCCTGACAGTGCTAGATGGATCGAGGAGCTTTGTGATCTACAGTGATGCCTCCAAGA
AAGGACTTGGTTGTGTGCTGATGCAACAAGGCAGGGTAGTTGCTTATGCCTCCCGTCAGTTGAAGAGTCACGAGCAGAACTATCCTACCCATGACCTAGAGTTGGAGTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSFGLTNAHAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHKVLETLRSNKLYAKFSKCEFWLKKVTFLDHVVSSEGVSVDPAKIEAVTSWPRLSTVSEIH
SFLGLAGYYRSFVEDFSRTASPLTQLTRKGTPFVSSPACESSFQELKQKLVSVPVLTVLDGSRSFVIYSDASKKGLGCVLMQQGRVVAYASRQLKSHEQNYPTHDLELE

Cmc08g0224541 (gene) of Melon (Charmono) v1.1 genome