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Cmc08g0224561 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0224561
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr08:14796137..14796601
RNA-Seq ExpressionCmc08g0224561
SyntenyCmc08g0224561
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032248.1 pol protein [Cucumis melo var. makuwa]3.8e-6592.54Show/hide
Query:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK
        +LFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDL S YHQLRIRD DIPKTAFRSRYGHYEF+VMSF LTNAPA+FMDLMNK
Subjt:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK

Query:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPV
        +FKDFLD+FVIVFIDDILIYSKTEAEHEEHLH V
Subjt:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPV

KAA0033486.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-6592.54Show/hide
Query:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK
        +LFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDL S YHQLRIRDSDIPKTAFRSRYGHYEF+VMSF LTNAPA+FMDLMN+
Subjt:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK

Query:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPV
        +FKDFLD+FVIVFIDDILIYSKTEAEHEEHLH V
Subjt:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPV

KAA0051719.1 pol protein [Cucumis melo var. makuwa]1.9e-6491.79Show/hide
Query:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK
        +LFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDL S YHQLR RDSDIPKTAFR RYGHYEFIVMSF LTNAPA+FMDLMN+
Subjt:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK

Query:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPV
        +FKDFLD+FVIVFIDDILIYSKTEAEHEEHLH V
Subjt:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPV

KAA0058528.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.0e-6788.73Show/hide
Query:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK
        +LFVKKKDGSMRLCIDYRELNKVT+KNCYPLPRIDDLFDQLQGATVFSKIDL S YHQLRIRDSDIPKT FRSRYGHYEFIVMSF LT+APA+F+DLM +
Subjt:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK

Query:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPVFWRLFEPI
        +FKDFLD+FVIVFIDDILIYSKTEAEHEEH H  FWRLFEPI
Subjt:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPVFWRLFEPI

TYK07218.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.0e-6788.73Show/hide
Query:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK
        +LFVKKKDGSMRLCIDYRELNKVT+KNCYPLPRIDDLFDQLQGATVFSKIDL S YHQLRIRDSDIPKT FRSRYGHYEFIVMSF LT+APA+F+DLM +
Subjt:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK

Query:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPVFWRLFEPI
        +FKDFLD+FVIVFIDDILIYSKTEAEHEEH H  FWRLFEPI
Subjt:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPVFWRLFEPI

TrEMBL top hitse value%identityAlignment
A0A5A7SNR3 Reverse transcriptase1.8e-6592.54Show/hide
Query:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK
        +LFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDL S YHQLRIRD DIPKTAFRSRYGHYEF+VMSF LTNAPA+FMDLMNK
Subjt:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK

Query:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPV
        +FKDFLD+FVIVFIDDILIYSKTEAEHEEHLH V
Subjt:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPV

A0A5A7SU25 Reverse transcriptase8.2e-6692.54Show/hide
Query:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK
        +LFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDL S YHQLRIRDSDIPKTAFRSRYGHYEF+VMSF LTNAPA+FMDLMN+
Subjt:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK

Query:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPV
        +FKDFLD+FVIVFIDDILIYSKTEAEHEEHLH V
Subjt:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPV

A0A5A7UE01 Reverse transcriptase9.1e-6591.79Show/hide
Query:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK
        +LFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDL S YHQLR RDSDIPKTAFR RYGHYEFIVMSF LTNAPA+FMDLMN+
Subjt:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK

Query:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPV
        +FKDFLD+FVIVFIDDILIYSKTEAEHEEHLH V
Subjt:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPV

A0A5A7UTP4 Reverse transcriptase4.3e-6788.73Show/hide
Query:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK
        +LFVKKKDGSMRLCIDYRELNKVT+KNCYPLPRIDDLFDQLQGATVFSKIDL S YHQLRIRDSDIPKT FRSRYGHYEFIVMSF LT+APA+F+DLM +
Subjt:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK

Query:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPVFWRLFEPI
        +FKDFLD+FVIVFIDDILIYSKTEAEHEEH H  FWRLFEPI
Subjt:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPVFWRLFEPI

A0A5D3C7T1 Reverse transcriptase4.3e-6788.73Show/hide
Query:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK
        +LFVKKKDGSMRLCIDYRELNKVT+KNCYPLPRIDDLFDQLQGATVFSKIDL S YHQLRIRDSDIPKT FRSRYGHYEFIVMSF LT+APA+F+DLM +
Subjt:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK

Query:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPVFWRLFEPI
        +FKDFLD+FVIVFIDDILIYSKTEAEHEEH H  FWRLFEPI
Subjt:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPVFWRLFEPI

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein9.1e-3042.75Show/hide
Query:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK
        ++FV KK+G++R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL S+YH +R+R  D  K AFR   G +E++VM + ++ APA F   +N 
Subjt:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK

Query:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPVFWRL
        I  +  ++ V+ ++DDILI+SK+E+EH +H+  V  +L
Subjt:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPVFWRL

P0CT35 Transposon Tf2-2 polyprotein9.1e-3042.75Show/hide
Query:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK
        ++FV KK+G++R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL S+YH +R+R  D  K AFR   G +E++VM + ++ APA F   +N 
Subjt:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK

Query:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPVFWRL
        I  +  ++ V+ ++DDILI+SK+E+EH +H+  V  +L
Subjt:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPVFWRL

P0CT36 Transposon Tf2-3 polyprotein9.1e-3042.75Show/hide
Query:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK
        ++FV KK+G++R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL S+YH +R+R  D  K AFR   G +E++VM + ++ APA F   +N 
Subjt:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK

Query:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPVFWRL
        I  +  ++ V+ ++DDILI+SK+E+EH +H+  V  +L
Subjt:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPVFWRL

P0CT41 Transposon Tf2-12 polyprotein9.1e-3042.75Show/hide
Query:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK
        ++FV KK+G++R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL S+YH +R+R  D  K AFR   G +E++VM + ++ APA F   +N 
Subjt:  MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNK

Query:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPVFWRL
        I  +  ++ V+ ++DDILI+SK+E+EH +H+  V  +L
Subjt:  IFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPVFWRL

P31843 RNA-directed DNA polymerase homolog8.8e-3354.69Show/hide
Query:  SMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNKIFKDFLDTF
        S+R+CIDYR L KVT+KN YP+PR+DDLFD+L  AT F+K+DL S Y Q+RI   D PKT   +RYG +EF VM F LTNA A F +LMN +  ++LD F
Subjt:  SMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNKIFKDFLDTF

Query:  VIVFIDDIL---IYSKTEAEHEEHLHPV
        V+V++DD++   IYS +  EH +HL  V
Subjt:  VIVFIDDIL---IYSKTEAEHEEHLHPV

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGACTACAGAGAGCTGAACAAGGTGACAGTCAAGAACTGTTACCCCTTGCCTAGAATTGAT
GACTTGTTCGATCAGTTACAGGGAGCCACCGTCTTTTCTAAGATCGACCTGCCATCAAGCTATCACCAGTTGAGGATCAGGGATAGTGATATTCCTAAGACAGCT
TTCCGTTCCAGATACGGGCACTACGAGTTCATCGTGATGTCCTTTAGTTTGACTAATGCTCCTGCGATATTCATGGACTTGATGAACAAGATATTTAAGGATTTC
TTAGACACGTTTGTCATAGTTTTCATTGACGACATTTTGATTTACTCCAAGACTGAGGCCGAGCACGAGGAGCATTTGCACCCGGTGTTTTGGAGACTCTTCGAG
CCAATAAGATGTATGCCAAGTTCTCCAAGTGTGAGTTCTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGACTACAGAGAGCTGAACAAGGTGACAGTCAAGAACTGTTACCCCTTGCCTAGAATTGAT
GACTTGTTCGATCAGTTACAGGGAGCCACCGTCTTTTCTAAGATCGACCTGCCATCAAGCTATCACCAGTTGAGGATCAGGGATAGTGATATTCCTAAGACAGCT
TTCCGTTCCAGATACGGGCACTACGAGTTCATCGTGATGTCCTTTAGTTTGACTAATGCTCCTGCGATATTCATGGACTTGATGAACAAGATATTTAAGGATTTC
TTAGACACGTTTGTCATAGTTTTCATTGACGACATTTTGATTTACTCCAAGACTGAGGCCGAGCACGAGGAGCATTTGCACCCGGTGTTTTGGAGACTCTTCGAG
CCAATAAGATGTATGCCAAGTTCTCCAAGTGTGAGTTCTGGCTGA
Protein sequenceShow/hide protein sequence
MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNKIFKDF
LDTFVIVFIDDILIYSKTEAEHEEHLHPVFWRLFEPIRCMPSSPSVSSG