| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0033149.1 gag-pol polyprotein [Cucumis melo var. makuwa] | 6.2e-90 | 82.52 | Show/hide |
Query: KNHPSSSIIGDVHSGIITRKKKRKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTDEQGRVIH
K+ + IIGDVHSGII RKK+RKDYAKMVANVCYTSSLE TV V +TDEH ILAMQEELL+FERNQVWELVPKPPHANIIGT WIFKNK DEQGRVI
Subjt: KNHPSSSIIGDVHSGIITRKKKRKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTDEQGRVIH
Query: NKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQAPRAWYER
NKARLV +RYSQI+GLDFGETF V RLE IR LLSY+CF+RFKLFQMDVKS +N YLSEEVYVAQPKGFVDL+HHD VYKL+KALYGLKQA RAWYER
Subjt: NKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQAPRAWYER
Query: LSTYLL
LSTYLL
Subjt: LSTYLL
|
|
| KAA0035460.1 gag-pol polyprotein [Cucumis melo var. makuwa] | 1.3e-95 | 78.8 | Show/hide |
Query: MPPMHIAKNHPSSSIIGDVHSGIITRKKKRKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTD
MPP H+ KNHP SS+IGD+HSGI T +K+R+DYAKMVANV YTS++E TTV LTDEH ILA+QEELL+FERNQVW LVPKPPH NIIGTKWIFKNK D
Subjt: MPPMHIAKNHPSSSIIGDVHSGIITRKKKRKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTD
Query: EQGRVIHNKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQA
EQGR+I NK RLV + YSQIKGLDFGETF P ARLE IRL+LS++CF+ FKLFQMDVKS +N YLSEEVYVAQPKGFVD +HHDHVYKL+KALYGLKQA
Subjt: EQGRVIHNKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQA
Query: PRAWYERLSTYLLQQGY
PRAWYERLSTYL+QQGY
Subjt: PRAWYERLSTYLLQQGY
|
|
| KAA0059225.1 gag-pol polyprotein [Cucumis melo var. makuwa] | 1.4e-97 | 82.95 | Show/hide |
Query: MPPMHIAKNHPSSSIIGDVHSGIITRKKKRKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTD
+PP H AKNHPSS II D+HSGIITRKK+RKDYAKMVANVCYTS LE TTV L+DEH IL +QEELL+FERNQVWELVPKPP+ANIIGTKWIFKNKTD
Subjt: MPPMHIAKNHPSSSIIGDVHSGIITRKKKRKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTD
Query: EQGRVIHNKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQA
E+GRVI NKARLV + YSQI+GLDFGETF PVARLE IRLLLSY+CF RFKLFQMDVKSA +N YL EEVYVAQPKGFVD +H DHVYKL+KALY LKQA
Subjt: EQGRVIHNKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQA
Query: PRAWYERLSTYLLQQGY
PRAWYERLSTYLLQQGY
Subjt: PRAWYERLSTYLLQQGY
|
|
| KAA0059939.1 gag-pol polyprotein [Cucumis melo var. makuwa] | 1.6e-90 | 83.25 | Show/hide |
Query: MPPMHIAKNHPSSSIIGDVHSGIITRKKKRKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTD
+PP HIAKNHPSS II D+HSGIITRKK+RKDY KMVANVCYTSSLE T V VL+DEH IL MQEELL+FERNQ+WELVPKPP+ANIIGTKWIFKNKTD
Subjt: MPPMHIAKNHPSSSIIGDVHSGIITRKKKRKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTD
Query: EQGRVIHNKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQA
E+GRVI NKARLV +RY QI+GLDFGETF PVARLE IRLLLSY+ F+RFKLFQMDVKSA +N YLSEEVYVAQPKGFVD +H DHVYKLQKALYGLKQA
Subjt: EQGRVIHNKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQA
Query: PRA
PRA
Subjt: PRA
|
|
| TYK31065.1 gag-pol polyprotein [Cucumis melo var. makuwa] | 1.3e-95 | 78.8 | Show/hide |
Query: MPPMHIAKNHPSSSIIGDVHSGIITRKKKRKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTD
MPP H+ KNHP SS+IGD+HSGI T +K+R+DYAKMVANV YTS++E TTV LTDEH ILA+QEELL+FERNQVW LVPKPPH NIIGTKWIFKNK D
Subjt: MPPMHIAKNHPSSSIIGDVHSGIITRKKKRKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTD
Query: EQGRVIHNKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQA
EQGR+I NK RLV + YSQIKGLDFGETF P ARLE IRL+LS++CF+ FKLFQMDVKS +N YLSEEVYVAQPKGFVD +HHDHVYKL+KALYGLKQA
Subjt: EQGRVIHNKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQA
Query: PRAWYERLSTYLLQQGY
PRAWYERLSTYL+QQGY
Subjt: PRAWYERLSTYLLQQGY
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SWP6 Gag-pol polyprotein | 6.3e-96 | 78.8 | Show/hide |
Query: MPPMHIAKNHPSSSIIGDVHSGIITRKKKRKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTD
MPP H+ KNHP SS+IGD+HSGI T +K+R+DYAKMVANV YTS++E TTV LTDEH ILA+QEELL+FERNQVW LVPKPPH NIIGTKWIFKNK D
Subjt: MPPMHIAKNHPSSSIIGDVHSGIITRKKKRKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTD
Query: EQGRVIHNKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQA
EQGR+I NK RLV + YSQIKGLDFGETF P ARLE IRL+LS++CF+ FKLFQMDVKS +N YLSEEVYVAQPKGFVD +HHDHVYKL+KALYGLKQA
Subjt: EQGRVIHNKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQA
Query: PRAWYERLSTYLLQQGY
PRAWYERLSTYL+QQGY
Subjt: PRAWYERLSTYLLQQGY
|
|
| A0A5A7V046 Gag-pol polyprotein | 6.7e-98 | 82.95 | Show/hide |
Query: MPPMHIAKNHPSSSIIGDVHSGIITRKKKRKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTD
+PP H AKNHPSS II D+HSGIITRKK+RKDYAKMVANVCYTS LE TTV L+DEH IL +QEELL+FERNQVWELVPKPP+ANIIGTKWIFKNKTD
Subjt: MPPMHIAKNHPSSSIIGDVHSGIITRKKKRKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTD
Query: EQGRVIHNKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQA
E+GRVI NKARLV + YSQI+GLDFGETF PVARLE IRLLLSY+CF RFKLFQMDVKSA +N YL EEVYVAQPKGFVD +H DHVYKL+KALY LKQA
Subjt: EQGRVIHNKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQA
Query: PRAWYERLSTYLLQQGY
PRAWYERLSTYLLQQGY
Subjt: PRAWYERLSTYLLQQGY
|
|
| A0A5A7V293 Gag-pol polyprotein | 7.9e-91 | 83.25 | Show/hide |
Query: MPPMHIAKNHPSSSIIGDVHSGIITRKKKRKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTD
+PP HIAKNHPSS II D+HSGIITRKK+RKDY KMVANVCYTSSLE T V VL+DEH IL MQEELL+FERNQ+WELVPKPP+ANIIGTKWIFKNKTD
Subjt: MPPMHIAKNHPSSSIIGDVHSGIITRKKKRKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTD
Query: EQGRVIHNKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQA
E+GRVI NKARLV +RY QI+GLDFGETF PVARLE IRLLLSY+ F+RFKLFQMDVKSA +N YLSEEVYVAQPKGFVD +H DHVYKLQKALYGLKQA
Subjt: EQGRVIHNKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQA
Query: PRA
PRA
Subjt: PRA
|
|
| A0A5D3CZY5 Gag-pol polyprotein | 3.0e-90 | 82.52 | Show/hide |
Query: KNHPSSSIIGDVHSGIITRKKKRKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTDEQGRVIH
K+ + IIGDVHSGII RKK+RKDYAKMVANVCYTSSLE TV V +TDEH ILAMQEELL+FERNQVWELVPKPPHANIIGT WIFKNK DEQGRVI
Subjt: KNHPSSSIIGDVHSGIITRKKKRKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTDEQGRVIH
Query: NKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQAPRAWYER
NKARLV +RYSQI+GLDFGETF V RLE IR LLSY+CF+RFKLFQMDVKS +N YLSEEVYVAQPKGFVDL+HHD VYKL+KALYGLKQA RAWYER
Subjt: NKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQAPRAWYER
Query: LSTYLL
LSTYLL
Subjt: LSTYLL
|
|
| A0A5D3E6X3 Gag-pol polyprotein | 6.3e-96 | 78.8 | Show/hide |
Query: MPPMHIAKNHPSSSIIGDVHSGIITRKKKRKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTD
MPP H+ KNHP SS+IGD+HSGI T +K+R+DYAKMVANV YTS++E TTV LTDEH ILA+QEELL+FERNQVW LVPKPPH NIIGTKWIFKNK D
Subjt: MPPMHIAKNHPSSSIIGDVHSGIITRKKKRKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTD
Query: EQGRVIHNKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQA
EQGR+I NK RLV + YSQIKGLDFGETF P ARLE IRL+LS++CF+ FKLFQMDVKS +N YLSEEVYVAQPKGFVD +HHDHVYKL+KALYGLKQA
Subjt: EQGRVIHNKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQA
Query: PRAWYERLSTYLLQQGY
PRAWYERLSTYL+QQGY
Subjt: PRAWYERLSTYLLQQGY
|
|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 5.1e-26 | 41.67 | Show/hide |
Query: AMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTDEQGRVIHNKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALI
A+ EL + N W + +P + NI+ ++W+F K +E G I KARLV + ++Q +D+ ETF PVAR+ + R +LS K+ QMDVK+A +
Subjt: AMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTDEQGRVIHNKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALI
Query: NRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQAPRAWYE
N L EE+Y+ P+G + D+V KL KA+YGLKQA R W+E
Subjt: NRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQAPRAWYE
|
|
| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.4e-28 | 41.29 | Show/hide |
Query: AMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTDEQGRVIHNKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALI
AMQEE+ ++N ++LV P + KW+FK K D +++ KARLV K + Q KG+DF E F+PV ++ +IR +LS + ++ Q+DVK+A +
Subjt: AMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTDEQGRVIHNKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALI
Query: NRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQAPRAWYERLSTYLLQQGY
+ L EE+Y+ QP+GF V KL K+LYGLKQAPR WY + +++ Q Y
Subjt: NRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQAPRAWYERLSTYLLQQGY
|
|
| P92520 Uncharacterized mitochondrial protein AtMg00820 | 1.1e-15 | 40.65 | Show/hide |
Query: IITRKKK--RKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTDEQGRVIHNKARLVDKRYSQI
++TR K K K + T E +V+ L D AMQEEL RN+ W LVP P + NI+G KW+FK K G + KARLV K + Q
Subjt: IITRKKK--RKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPPHANIIGTKWIFKNKTDEQGRVIHNKARLVDKRYSQI
Query: KGLDFGETFTPVARLETIRLLLS
+G+ F ET++PV R TIR +L+
Subjt: KGLDFGETFTPVARLETIRLLLS
|
|
| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 3.0e-34 | 38.25 | Show/hide |
Query: PPMHIAKNHPSSSIIGDVHSGIITRKKKRKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPP-HANIIGTKWIFKNKTD
PP+ N+ + + + G + K K V + E T + L DE AM E+ N W+LVP PP H I+G +WIF K +
Subjt: PPMHIAKNHPSSSIIGDVHSGIITRKKKRKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELVPKPP-HANIIGTKWIFKNKTD
Query: EQGRVIHNKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQA
G + KARLV K Y+Q GLD+ ETF+PV + +IR++L + + + + Q+DV +A + L+++VY++QP GF+D ++V KL+KALYGLKQA
Subjt: EQGRVIHNKARLVDKRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQA
Query: PRAWYERLSTYLLQQGY
PRAWY L YLL G+
Subjt: PRAWYERLSTYLLQQGY
|
|
| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 8.6e-34 | 40.89 | Show/hide |
Query: DVHSGIITRKKK--RKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELV-PKPPHANIIGTKWIFKNKTDEQGRVIHNKARLVD
+ HS + TR K RK K ++ E T + + D+ AM E+ N W+LV P PP I+G +WIF K + G + KARLV
Subjt: DVHSGIITRKKK--RKDYAKMVANVCYTSSLEHTTVLVVLTDEHCILAMQEELLRFERNQVWELV-PKPPHANIIGTKWIFKNKTDEQGRVIHNKARLVD
Query: KRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQAPRAWYERLSTYLLQ
K Y+Q GLD+ ETF+PV + +IR++L + + + + Q+DV +A + L++EVY++QP GFVD D+V +L+KA+YGLKQAPRAWY L TYLL
Subjt: KRYSQIKGLDFGETFTPVARLETIRLLLSYSCFQRFKLFQMDVKSALINRYLSEEVYVAQPKGFVDLMHHDHVYKLQKALYGLKQAPRAWYERLSTYLLQ
Query: QGY
G+
Subjt: QGY
|
|
